PREDICTED: Drosophila obscura uncharacterized LOC111066338
LOCUS XM_041591937 6903 bp mRNA linear INV 14-MAY-2021
(LOC111066338), mRNA.
ACCESSION XM_041591937
VERSION XM_041591937.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq; corrected model.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
frameshifts :: corrected 1 indel
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-426 JAECWW010000165.1 2336549-2336974
427-489 JAECWW010000165.1 2338349-2338411
490-536 JAECWW010000165.1 2389340-2389386
537-2338 JAECWW010000165.1 2406897-2408698
2339-2563 JAECWW010000165.1 2409300-2409524
2564-2697 JAECWW010000165.1 2409600-2409733
2698-2898 JAECWW010000165.1 2409778-2409978
2899-3444 JAECWW010000165.1 2410044-2410589
3445-3740 JAECWW010000165.1 2411678-2411973
3741-3985 JAECWW010000165.1 2412005-2412249
3986-4510 JAECWW010000165.1 2412334-2412858
4511-5679 JAECWW010000165.1 2412941-2414109
5680-5734 JAECWW010000165.1 2414111-2414165
5735-5865 JAECWW010000165.1 2415692-2415822
5866-5871 JAECWW010000165.1 2416592-2416597
5872-6639 JAECWW010000165.1 2416965-2417732
6640-6780 JAECWW010000165.1 2417821-2417961
6781-6903 JAECWW010000165.1 2418026-2418148
FEATURES Location/Qualifiers
source 1..6903
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6903
/gene="LOC111066338"
/note="The sequence of the model RefSeq transcript was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 1 base in 1 codon;
Derived by automated computational analysis using gene
prediction method: Gnomon. Supporting evidence includes
similarity to: 2 Proteins, and 96% coverage of the
annotated genomic feature by RNAseq alignments"
/db_xref="GeneID:111066338"
CDS 553..6852
/gene="LOC111066338"
/note="The sequence of the model RefSeq protein was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 1 base in 1 codon"
/codon_start=1
/product="LOW QUALITY PROTEIN: uncharacterized protein
LOC111066338"
/protein_id="XP_041447871.1"
/db_xref="GeneID:111066338"
/translation="MVSTTLTTLAAGQTTSSNNHHHHHHHHHQQQQQQQQQQHQQLQQ
QQQQQQLPYERLPPHATASTGGPAGSLAAATASNQSRSFYALNGLEHDCDGNSSSSYP
QQQQQQPSPSINDQISLLFPKCRPKQQLHHHPQQHHHSQLQQQQQQQQQQQQRHELHT
DVNLNRSSSPTTVAVTTTTDPAATPTSTTPSYYKSVNIITQSPPPHSASSHSSESLSS
VTPRISTNPFLCAPLTPPTPPPPPLLHSSAALPVEGEPEGSHASKDGGSGVAAGGARA
GAEEEEEVDETVLAAGYPASFYYHTGDSRRGQSTNYPEMPRKRSTGLPTSASASAISS
SSRQQPLHNGGGSNVNGTASNGNTPNIQAQSQSQSQNPFIKENYWDAAPMRASSLLHS
PTEYAEEQQQQHQQQQHLQASARRAYHQQREQMATQLYGLAQRQATQQQPPAHILRVG
RSPISRSYTVPQQQQQQPQQPQQSVNNACADGLTPLASHYLYGSKSSLDQHGAGDWEP
REQRKLRMREEREREREHLLLEQEVQAARENHMTHLAGQQQQQRKRHGHGEERERERE
RERDHRLVNGSATGNEALYGSADPGESWQHLRVTTEANVSEEGCKHASKLIEKTLTMP
QSQLQLQLQSGLRSLEEAALYREHKLDAWQLERNYTLAVESRHGIIEYEGSPRRIGGW
GAVTAAAAASASAADESEPPAAATATAAATAAAQAHSQLPMAAVPPLSSTASTLQKTA
ARAALAALAQTQTQTQTQNHIQNHSQAPQPLQAYPVRPGFPQRILSPPHREPRSCSPQ
PPQHVAPQHNTNTSMMSNHSNNKLQLQQPVGSDTNAEDTSNDVSEIGTISDLTTPEAV
ALALANEALAVSRSATATPPMHTAATAPPTACCSTTAAAAAGGAAGAGVGLGVGVGVG
VGPLSLHTKSSTFDYLYEFSETRKVLEEFFKCPSTDEQPIMENGSDVDSIDIQYEFHS
NFERDEEELVEEEDEDEDDDGDGDDEENDEAEDEDEAVAQDPEHDEDYQQQPGPCSDL
TREAERHVYGGYAQPQLQMQLQLQLQRSAHARGSGSPLMRDFDFFLDSASRSSGERDG
EQDGLNHNQLLSTGSGSGLGQSVGGGGGVGVGPAGGHNYRYSPETTDYDSNCGDLDSL
SGEMNGGGVSTSCSNYAKYYASAMPVLEDGLSSGHTSDTENNNNKNLQLAGVQGGQGQ
VQGQQCPNSLSASTSIGGSGGISMLMDMKRLSTNNSLNSMHNLTTASTTDSNGGQGGQ
GGHPVSSPSPSNGHAKQPPPMPQPRELLGQSPSQTQSHSQNKVFKNIDPDLDSLYSIS
VFHRPDTVQMTPPPPAPAPHRKPNSSSAADIDLLQPSSKHTPLAAAISSTLQRSSPTT
PSGTGTGTGSGPSKPRSAASNGSSSNGNANGNGVPPPIPERSSLIPAQQQQQRSPSPV
ISSPVWLSRHLDGGVGKGLLESGSDNHSKNHSADEDDVDTDLETDRLLGHQRLDDQGY
YDENKSWDRKPRSSLLSKISPKQQMPSTKTRNGYNALLSSTPELLPPPPIPPKSSTGS
GGKLLDLVGGMVQRSISRSSSEHSEKSPSKLQAQQQQQQLQQSGSIGDPVDVVASAVG
AASVAAAVATAPPMERPGNGGRWGGGSERSVNGGAGIIKLEAENGGSLNGGITISSAA
VTGGGVTGGGSNVAANPGAVTTTVNAGSNNSSGSGAGSNSNAAAGGSGEKKVKKSKSK
EGGAVLIEGVLFRAKYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKALAPDGDVQPSTE
VDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVPQDIDDAPKP
NRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHRFVKEMDYQEVLNSQ
EIFGDELEIFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLMSSGAAAR
CGQLNIGDQLIAINGLSLVGLPLSTCQTYIKNTKNQTVVKFTVVPCAPVVEVKIKRPE
TKYQLGFSVQNGVICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV
GEILMKTMPTSMFRLLTGQENPIYI"
misc_feature 5740..6204
/gene="LOC111066338"
/note="X11-like Phosphotyrosine-binding (PTB) domain;
Region: PTB_X11; cd01208"
/db_xref="CDD:269919"
misc_feature order(5773..5775,6013..6015,6112..6114)
/gene="LOC111066338"
/note="putative phosphoinositide binding site [chemical
binding]; other site"
/db_xref="CDD:269919"
misc_feature order(5827..5829,5980..5982,5989..6006,6136..6138,
6169..6171,6178..6180)
/gene="LOC111066338"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:269919"
misc_feature 6301..6558
/gene="LOC111066338"
/note="PDZ domain 1 of amyloid-beta A4 precursor
protein-binding family A member 1 (APBA1), APBA2, APBA3,
and related domains; Region: PDZ1_APBA1_3-like; cd06720"
/db_xref="CDD:467203"
misc_feature order(6334..6354,6394..6396,6403..6405,6493..6495,
6505..6507,6514..6519)
/gene="LOC111066338"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467203"
misc_feature 6568..6801
/gene="LOC111066338"
/note="PDZ domain 2 of amyloid-beta A4 precursor
protein-binding family A member 1 (APBA1), APBA2, APBA3,
and related domains; Region: PDZ2_APBA1_3-like; cd06793"
/db_xref="CDD:467255"
misc_feature order(6610..6630,6643..6645,6652..6654,6739..6741,
6751..6753,6760..6765)
/gene="LOC111066338"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467255"
ORIGIN
1 tgacaataac tatgtataat taattaattg ataaatattt atgtatgtat gtatgtacaa
61 caaactgatc gaaaagacaa taacggaact gagaacgcga gcgctaaaga gaaacgatat
121 aaaaacgttg caccaaccac cgcttcaccg ccacaacgcc tcacagctcg ctcgttcacc
181 gctaatgcaa ccgctccacc actaccaaca ccaccaccac aaccaccact accgctacta
241 caactagtac tagtaccacc acaaccaatg ccacccacca ataccaccaa caagaacaaa
301 tagccaaaac aagccaccat gccaaaaaga cagtaaaggc caaataaaga taaagacaaa
361 gatacagata cagataaaag ctaaaagatt tcgaaaaaga accgaaaatg tcgtcatttg
421 caaaatcagc cgcagcagcc ccaggcagag ccctcattga ccacgaagca tatgagctag
481 tggctaaagg tgtctacggc atcgacctgt ttcatgttgt aattcgagga ctttcgttta
541 ttggcaacaa taatggtcag cacaacattg acaacattgg ctgctggaca aacaactagt
601 agcaataatc atcatcacca ccaccatcat caccaccagc agcagcagca gcagcaacag
661 cagcaacatc agcaactgca acagcagcag caacagcaac agttgcccta cgagcgactg
721 ccgccacacg ccacagcttc cacagggggg ccagcaggat cacttgcagc agcaaccgcc
781 agcaaccagt cgcgcagctt ctatgcgctg aacggtctgg agcacgactg cgacggcaac
841 agcagcagca gctatccaca gcagcaacag cagcagccct ctccttcgat caacgatcag
901 atcagcctgc tcttcccaaa gtgccggccc aagcagcagc tgcatcatca tccacagcag
961 catcatcatt cacagctgca gcaacagcag cagcagcagc agcagcagca gcagcgacat
1021 gagctccaca cggatgtaaa tcttaacaga agcagcagcc ccaccactgt agcagtcact
1081 acgaccacgg atcccgctgc cacgcccacc agcaccacgc ccagctacta caagagcgtg
1141 aacatcataa cacagtcgcc gccgccgcac tcggcctcgt cacactcctc ggagtcgctc
1201 tcctcggtga cgccgcgcat atccacaaat ccgttcctgt gcgccccact gacgccgccc
1261 acaccgccgc caccgccgct gctgcacagc tccgctgcac ttccagtcga gggcgagcca
1321 gagggatcgc acgcatccaa ggacggagga tctggcgttg ctgctggtgg agcgcgtgcc
1381 ggagctgaag aggaggagga agtagacgag accgtactgg cggcaggcta tccggcctca
1441 ttctactacc acacgggcga cagcagacgg ggccagagca ccaactaccc cgagatgccg
1501 cgcaaacgga gcacaggcct gcccaccagc gccagtgcca gcgccatcag cagcagcagc
1561 aggcagcagc cactgcacaa cggcggcggc agcaacgtga acggaactgc cagcaatggc
1621 aataccccga atatccaggc acagagccag agccagagcc agaatccctt catcaaggag
1681 aactactggg atgcagctcc catgcgtgcc agctccctgc tgcactctcc cacggaatac
1741 gctgaggagc agcagcagca gcatcaacag cagcaacatc ttcaagcctc tgcccggcgg
1801 gcataccacc aacagcggga gcagatggcc acacagctgt acggcttggc ccagcgacag
1861 gcaacgcagc agcagccgcc agcgcacatc ctacgggttg gacggagccc gatcagccgc
1921 agctacacgg taccccagca gcagcagcaa cagccgcagc agccgcagca atccgtaaac
1981 aatgcctgtg cggacggact gaccccactg gccagccact atctgtacgg tagcaaatcc
2041 tcgctggacc agcatggggc cggcgactgg gagccgcggg agcagcgcaa actgaggatg
2101 cgcgaggagc gagagcggga aagggagcac ctgttgctgg agcaggaggt gcaggcggca
2161 cgggaaaacc acatgaccca cttggcgggg cagcagcagc agcagcgcaa gcgacatgga
2221 cacggcgagg agagggaacg tgaaagggaa agggaacgcg atcatcgtct ggtgaatggc
2281 agcgccacag gcaatgaggc attgtacgga tcggcagatc ccggcgagag ctggcagcat
2341 ctgcgtgtga cgaccgaagc gaatgtgagc gaggagggct gcaagcatgc cagcaagctc
2401 attgagaaga ccctgacgat gccacagtcg cagttgcagc tgcaactgca gtccggcctg
2461 aggagccttg aggaggcggc cctgtatcgg gagcacaagc tggatgcctg gcaactggag
2521 cgcaactaca cgctggccgt ggagtcgcgt cacggcatta tagaatacga gggctctcca
2581 cgtcgcattg gtggctgggg tgcagtgact gcagcagcag cggcctcagc ctcagcagcg
2641 gacgaaagcg aaccaccagc agcagcaaca gcaacagcag cagcaacagc agcagcacag
2701 gctcactcac agcttcccat ggccgctgtg ccaccgttga gctcaacagc cagcacgctg
2761 caaaagacag cggcccgggc agcccttgcc gctctggccc agacccagac acagacccag
2821 acccagaatc acattcagaa tcactcgcag gcaccgcagc cattgcaggc ctatcccgtg
2881 cgcccgggtt tcccacagcg catcctttcg ccgcctcatc gcgagccacg cagctgctcc
2941 ccacagccgc cgcagcatgt ggcaccacag cacaacacga acacgagcat gatgagcaac
3001 cacagcaaca acaaacttca actgcaacag ccggtgggca gcgacaccaa tgcggaggac
3061 accagcaacg atgtgtccga aattggcacc atatccgatc tgaccacgcc ggaagcggtg
3121 gccctggccc tggccaatga ggccctggca gtcagcagat cggcaacggc cacgccacca
3181 atgcacacag cagccacagc accaccgaca gcctgctgct caacaacagc agcagcagca
3241 gcaggaggag cagcaggagc tggagtagga cttggtgtgg gtgtgggtgt gggtgttgga
3301 ccactgagtc tacacacaaa atcatcgaca tttgattacc tctacgagtt ctcggagacg
3361 cgcaaagtgc tagaggagtt cttcaagtgc ccctcgaccg acgagcagcc catcatggag
3421 aacggcagcg atgtggacag cattgacatc cagtacgagt tccacagcaa ctttgagcgc
3481 gacgaggagg agctggtcga ggaggaggat gaggacgagg atgacgacgg cgatggcgac
3541 gatgaggaga acgatgaggc agaggacgag gacgaagccg ttgcgcagga cccggagcat
3601 gacgaggact atcagcagca gccaggcccc tgctcagatc tgaccagaga ggcggagcgt
3661 catgtctacg gcggatacgc tcagccgcag ctgcagatgc agttgcagtt gcagctgcag
3721 aggtcagccc atgcccgtgg cagcggcagc ccactgatgc gggactttga cttcttcctc
3781 gactccgcca gccgaagcag cggcgagcgg gacggcgaac aggatggcct caatcacaac
3841 caactgctga gcaccggcag cggcagtggg ctcggccaga gcgtgggcgg gggcgggggc
3901 gtgggcgtgg gccctgccgg tggccacaac taccgctact cgccggagac caccgactac
3961 gactccaact gtggcgatct ggacagtctc tctggggaga tgaacggcgg cggcgtgtcc
4021 acctcgtgct cgaactacgc caagtactat gcctcggcca tgcccgtgct ggaggatggc
4081 ctctcctcgg gccacaccag cgacaccgag aacaacaaca acaagaatct gcagctggcc
4141 ggcgtgcagg ggggtcaggg tcaggtacag ggacagcagt gccccaacag cctgagtgcc
4201 agcaccagca tcggtggcag cggcggcatc tccatgctga tggacatgaa gcgcctgtcc
4261 accaacaaca gcctcaatag catgcacaac ctgaccaccg cctccaccac ggacagcaat
4321 ggcggccagg ggggccaggg gggccacccc gtcagcagtc ccagtcccag caacggccat
4381 gccaagcagc caccgcccat gccacagccc cgggagctgc tcggccagag tcccagccag
4441 acgcagagcc acagccagaa caaagtgttc aagaacatcg atcccgacct ggactcgctc
4501 tattcgatca gtgttttcca tcggccggac acggtgcaga tgacgccgcc gccaccggct
4561 ccggcgccgc atcgcaagcc caatagcagc agcgccgcag acattgatct gctgcagccg
4621 agcagcaagc acacgcccct ggcggcggcc atcagctcca cgctgcagcg cagctcgccc
4681 accaccccat ctgggactgg gactgggact gggtctgggc ccagtaagcc gagaagtgcg
4741 gctagcaacg gcagcagcag caatggcaat gccaatggca acggagtacc accgccaatt
4801 ccggaaagaa gcagcctcat tccggcacaa cagcagcaac agcgatcacc ttcgccggtg
4861 attagctcac ccgtgtggct gtcccggcac ctggacggtg gtgttggcaa ggggctgctc
4921 gagtccggct cggacaacca ctcgaagaat cacagtgcgg acgaggacga tgtggacacc
4981 gatctggaga cggaccggct gctgggacac cagcggctgg acgatcaggg ctactacgac
5041 gagaacaaga gctgggaccg caagccgcgc tcctcgctgc tctccaagat ctcgcccaaa
5101 cagcagatgc ccagcacgaa gacgcgcaac ggctacaatg cgctgctgag ctccacgccg
5161 gagctgctgc cgccgccgcc cataccccca aagagctcca ccggcagcgg cggcaagctg
5221 ctcgaccttg tcggtggcat ggtccagcgc agcatatcac gcagctcctc ggagcacagc
5281 gagaaatcgc ccagcaagtt gcaggcacag cagcagcagc aacagctgca gcagtctggc
5341 tcaatcggcg accctgtgga tgtggtggcc tcggccgtgg gggctgcctc agtggctgca
5401 gcggtggcaa cggcaccgcc catggaaaga cccggcaatg gggggcggtg gggtggagga
5461 tctgaacgtt ccgtcaacgg tggcgctggc atcatcaagc tggaggcgga gaacggcggc
5521 agcctcaatg gaggcatcac catcagcagc gcggcagtga ccggaggcgg agtaaccgga
5581 ggaggcagca atgtggccgc caatccgggc gccgtcacca caacagtcaa tgcgggcagc
5641 aacaacagca gcggcagcgg cgccggcagc aacagcaacg cggctgcggg cggcagcggc
5701 gagaaaaaag tgaaaaagag taagagcaaa gaaggcggcg cagtgctcat cgagggcgtg
5761 ctcttcaggg ccaagtactt gggctccacg cagctggtct gcgagggtca gcccacaaag
5821 tcgacgcgca tgatgcaggc cgaggaggcc gtctcccgta tcaaggccct ggcacccgat
5881 ggcgatgttc agcccagcac cgaagtggat ctgtttatat caactgaaaa gataatggtg
5941 ctgaacaccg acttgaagga gatcatgatg gatcatgcgc tgcgcacaat ctcctatata
6001 gcggacattg gggatctggt ggtgctgatg gctcgacgcc gctttgtgcc gcaggacatt
6061 gacgacgcac ccaagccaaa tcgtacgccc aagatgatct gtcatgtgtt cgagagcgat
6121 gaggcgcagt tcattgccca gtcgattggg caggcgttcc aggtggccta catggagttc
6181 ctcaaggcca atggcatcga agaccatcga ttcgtcaagg agatggacta ccaggaggtg
6241 ctcaatagcc aggagatctt cggcgatgag cttgagatct ttgccaaaaa ggagctgcaa
6301 aaggaggtcg ttgtgcccaa ggccaagggc gagattctcg gcgtggtcat tgtcgagagc
6361 ggttggggtt ccatgctgcc caccgtcgtc attgccaatc tgatgagctc cggtgcggcg
6421 gcccgctgcg gccagctgaa tatcggtgat cagctgatcg ccatcaatgg actgagcctc
6481 gtcggcctgc cgctctccac ctgccagacg tacataaaga acaccaaaaa ccagaccgtc
6541 gtcaagttta cagtggtgcc ctgcgccccc gttgtcgagg tgaagatcaa gcggccagag
6601 accaaatatc agctgggatt cagtgttcag aacggtgtga tttgcagtct gttgcgcggt
6661 ggcatagccg aacggggcgg tgtccgtgtt ggtcatcgca tcattgagat caacaaccag
6721 agcgtggtgg cagtgcccca cgagaagatc gttaacttgc tcgccacttc agtgggggag
6781 atactcatga agacgatgcc cacatccatg ttccgcctgc tcaccggcca ggagaatccc
6841 atatatattt aagcactggg ctgatcgata gatcgatgat attgttaact acaaaaacca
6901 tat