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LOCUS XM_041591937 6903 bp mRNA linear INV 14-MAY-2021 (LOC111066338), mRNA. ACCESSION XM_041591937 VERSION XM_041591937.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-426 JAECWW010000165.1 2336549-2336974 427-489 JAECWW010000165.1 2338349-2338411 490-536 JAECWW010000165.1 2389340-2389386 537-2338 JAECWW010000165.1 2406897-2408698 2339-2563 JAECWW010000165.1 2409300-2409524 2564-2697 JAECWW010000165.1 2409600-2409733 2698-2898 JAECWW010000165.1 2409778-2409978 2899-3444 JAECWW010000165.1 2410044-2410589 3445-3740 JAECWW010000165.1 2411678-2411973 3741-3985 JAECWW010000165.1 2412005-2412249 3986-4510 JAECWW010000165.1 2412334-2412858 4511-5679 JAECWW010000165.1 2412941-2414109 5680-5734 JAECWW010000165.1 2414111-2414165 5735-5865 JAECWW010000165.1 2415692-2415822 5866-5871 JAECWW010000165.1 2416592-2416597 5872-6639 JAECWW010000165.1 2416965-2417732 6640-6780 JAECWW010000165.1 2417821-2417961 6781-6903 JAECWW010000165.1 2418026-2418148 FEATURES Location/Qualifiers source 1..6903 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6903 /gene="LOC111066338" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111066338" CDS 553..6852 /gene="LOC111066338" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: uncharacterized protein LOC111066338" /protein_id="XP_041447871.1" /db_xref="GeneID:111066338" /translation="MVSTTLTTLAAGQTTSSNNHHHHHHHHHQQQQQQQQQQHQQLQQ QQQQQQLPYERLPPHATASTGGPAGSLAAATASNQSRSFYALNGLEHDCDGNSSSSYP QQQQQQPSPSINDQISLLFPKCRPKQQLHHHPQQHHHSQLQQQQQQQQQQQQRHELHT DVNLNRSSSPTTVAVTTTTDPAATPTSTTPSYYKSVNIITQSPPPHSASSHSSESLSS VTPRISTNPFLCAPLTPPTPPPPPLLHSSAALPVEGEPEGSHASKDGGSGVAAGGARA GAEEEEEVDETVLAAGYPASFYYHTGDSRRGQSTNYPEMPRKRSTGLPTSASASAISS SSRQQPLHNGGGSNVNGTASNGNTPNIQAQSQSQSQNPFIKENYWDAAPMRASSLLHS PTEYAEEQQQQHQQQQHLQASARRAYHQQREQMATQLYGLAQRQATQQQPPAHILRVG RSPISRSYTVPQQQQQQPQQPQQSVNNACADGLTPLASHYLYGSKSSLDQHGAGDWEP REQRKLRMREEREREREHLLLEQEVQAARENHMTHLAGQQQQQRKRHGHGEERERERE RERDHRLVNGSATGNEALYGSADPGESWQHLRVTTEANVSEEGCKHASKLIEKTLTMP QSQLQLQLQSGLRSLEEAALYREHKLDAWQLERNYTLAVESRHGIIEYEGSPRRIGGW GAVTAAAAASASAADESEPPAAATATAAATAAAQAHSQLPMAAVPPLSSTASTLQKTA ARAALAALAQTQTQTQTQNHIQNHSQAPQPLQAYPVRPGFPQRILSPPHREPRSCSPQ PPQHVAPQHNTNTSMMSNHSNNKLQLQQPVGSDTNAEDTSNDVSEIGTISDLTTPEAV ALALANEALAVSRSATATPPMHTAATAPPTACCSTTAAAAAGGAAGAGVGLGVGVGVG VGPLSLHTKSSTFDYLYEFSETRKVLEEFFKCPSTDEQPIMENGSDVDSIDIQYEFHS NFERDEEELVEEEDEDEDDDGDGDDEENDEAEDEDEAVAQDPEHDEDYQQQPGPCSDL TREAERHVYGGYAQPQLQMQLQLQLQRSAHARGSGSPLMRDFDFFLDSASRSSGERDG EQDGLNHNQLLSTGSGSGLGQSVGGGGGVGVGPAGGHNYRYSPETTDYDSNCGDLDSL SGEMNGGGVSTSCSNYAKYYASAMPVLEDGLSSGHTSDTENNNNKNLQLAGVQGGQGQ VQGQQCPNSLSASTSIGGSGGISMLMDMKRLSTNNSLNSMHNLTTASTTDSNGGQGGQ GGHPVSSPSPSNGHAKQPPPMPQPRELLGQSPSQTQSHSQNKVFKNIDPDLDSLYSIS VFHRPDTVQMTPPPPAPAPHRKPNSSSAADIDLLQPSSKHTPLAAAISSTLQRSSPTT PSGTGTGTGSGPSKPRSAASNGSSSNGNANGNGVPPPIPERSSLIPAQQQQQRSPSPV ISSPVWLSRHLDGGVGKGLLESGSDNHSKNHSADEDDVDTDLETDRLLGHQRLDDQGY YDENKSWDRKPRSSLLSKISPKQQMPSTKTRNGYNALLSSTPELLPPPPIPPKSSTGS GGKLLDLVGGMVQRSISRSSSEHSEKSPSKLQAQQQQQQLQQSGSIGDPVDVVASAVG AASVAAAVATAPPMERPGNGGRWGGGSERSVNGGAGIIKLEAENGGSLNGGITISSAA VTGGGVTGGGSNVAANPGAVTTTVNAGSNNSSGSGAGSNSNAAAGGSGEKKVKKSKSK EGGAVLIEGVLFRAKYLGSTQLVCEGQPTKSTRMMQAEEAVSRIKALAPDGDVQPSTE VDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVPQDIDDAPKP NRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHRFVKEMDYQEVLNSQ EIFGDELEIFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLMSSGAAAR CGQLNIGDQLIAINGLSLVGLPLSTCQTYIKNTKNQTVVKFTVVPCAPVVEVKIKRPE TKYQLGFSVQNGVICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV GEILMKTMPTSMFRLLTGQENPIYI" misc_feature 5740..6204 /gene="LOC111066338" /note="X11-like Phosphotyrosine-binding (PTB) domain; Region: PTB_X11; cd01208" /db_xref="CDD:269919" misc_feature order(5773..5775,6013..6015,6112..6114) /gene="LOC111066338" /note="putative phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:269919" misc_feature order(5827..5829,5980..5982,5989..6006,6136..6138, 6169..6171,6178..6180) /gene="LOC111066338" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:269919" misc_feature 6301..6558 /gene="LOC111066338" /note="PDZ domain 1 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ1_APBA1_3-like; cd06720" /db_xref="CDD:467203" misc_feature order(6334..6354,6394..6396,6403..6405,6493..6495, 6505..6507,6514..6519) /gene="LOC111066338" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467203" misc_feature 6568..6801 /gene="LOC111066338" /note="PDZ domain 2 of amyloid-beta A4 precursor protein-binding family A member 1 (APBA1), APBA2, APBA3, and related domains; Region: PDZ2_APBA1_3-like; cd06793" /db_xref="CDD:467255" misc_feature order(6610..6630,6643..6645,6652..6654,6739..6741, 6751..6753,6760..6765) /gene="LOC111066338" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467255" ORIGIN 1 tgacaataac tatgtataat taattaattg ataaatattt atgtatgtat gtatgtacaa 61 caaactgatc gaaaagacaa taacggaact gagaacgcga gcgctaaaga gaaacgatat 121 aaaaacgttg caccaaccac cgcttcaccg ccacaacgcc tcacagctcg ctcgttcacc 181 gctaatgcaa ccgctccacc actaccaaca ccaccaccac aaccaccact accgctacta 241 caactagtac tagtaccacc acaaccaatg ccacccacca ataccaccaa caagaacaaa 301 tagccaaaac aagccaccat gccaaaaaga cagtaaaggc caaataaaga taaagacaaa 361 gatacagata cagataaaag ctaaaagatt tcgaaaaaga accgaaaatg tcgtcatttg 421 caaaatcagc cgcagcagcc ccaggcagag ccctcattga ccacgaagca tatgagctag 481 tggctaaagg tgtctacggc atcgacctgt ttcatgttgt aattcgagga ctttcgttta 541 ttggcaacaa taatggtcag cacaacattg acaacattgg ctgctggaca aacaactagt 601 agcaataatc atcatcacca ccaccatcat caccaccagc agcagcagca gcagcaacag 661 cagcaacatc agcaactgca acagcagcag caacagcaac agttgcccta cgagcgactg 721 ccgccacacg ccacagcttc cacagggggg ccagcaggat cacttgcagc agcaaccgcc 781 agcaaccagt cgcgcagctt ctatgcgctg aacggtctgg agcacgactg cgacggcaac 841 agcagcagca gctatccaca gcagcaacag cagcagccct ctccttcgat caacgatcag 901 atcagcctgc tcttcccaaa gtgccggccc aagcagcagc tgcatcatca tccacagcag 961 catcatcatt cacagctgca gcaacagcag cagcagcagc agcagcagca gcagcgacat 1021 gagctccaca cggatgtaaa tcttaacaga agcagcagcc ccaccactgt agcagtcact 1081 acgaccacgg atcccgctgc cacgcccacc agcaccacgc ccagctacta caagagcgtg 1141 aacatcataa cacagtcgcc gccgccgcac tcggcctcgt cacactcctc ggagtcgctc 1201 tcctcggtga cgccgcgcat atccacaaat ccgttcctgt gcgccccact gacgccgccc 1261 acaccgccgc caccgccgct gctgcacagc tccgctgcac ttccagtcga gggcgagcca 1321 gagggatcgc acgcatccaa ggacggagga tctggcgttg ctgctggtgg agcgcgtgcc 1381 ggagctgaag aggaggagga agtagacgag accgtactgg cggcaggcta tccggcctca 1441 ttctactacc acacgggcga cagcagacgg ggccagagca ccaactaccc cgagatgccg 1501 cgcaaacgga gcacaggcct gcccaccagc gccagtgcca gcgccatcag cagcagcagc 1561 aggcagcagc cactgcacaa cggcggcggc agcaacgtga acggaactgc cagcaatggc 1621 aataccccga atatccaggc acagagccag agccagagcc agaatccctt catcaaggag 1681 aactactggg atgcagctcc catgcgtgcc agctccctgc tgcactctcc cacggaatac 1741 gctgaggagc agcagcagca gcatcaacag cagcaacatc ttcaagcctc tgcccggcgg 1801 gcataccacc aacagcggga gcagatggcc acacagctgt acggcttggc ccagcgacag 1861 gcaacgcagc agcagccgcc agcgcacatc ctacgggttg gacggagccc gatcagccgc 1921 agctacacgg taccccagca gcagcagcaa cagccgcagc agccgcagca atccgtaaac 1981 aatgcctgtg cggacggact gaccccactg gccagccact atctgtacgg tagcaaatcc 2041 tcgctggacc agcatggggc cggcgactgg gagccgcggg agcagcgcaa actgaggatg 2101 cgcgaggagc gagagcggga aagggagcac ctgttgctgg agcaggaggt gcaggcggca 2161 cgggaaaacc acatgaccca cttggcgggg cagcagcagc agcagcgcaa gcgacatgga 2221 cacggcgagg agagggaacg tgaaagggaa agggaacgcg atcatcgtct ggtgaatggc 2281 agcgccacag gcaatgaggc attgtacgga tcggcagatc ccggcgagag ctggcagcat 2341 ctgcgtgtga cgaccgaagc gaatgtgagc gaggagggct gcaagcatgc cagcaagctc 2401 attgagaaga ccctgacgat gccacagtcg cagttgcagc tgcaactgca gtccggcctg 2461 aggagccttg aggaggcggc cctgtatcgg gagcacaagc tggatgcctg gcaactggag 2521 cgcaactaca cgctggccgt ggagtcgcgt cacggcatta tagaatacga gggctctcca 2581 cgtcgcattg gtggctgggg tgcagtgact gcagcagcag cggcctcagc ctcagcagcg 2641 gacgaaagcg aaccaccagc agcagcaaca gcaacagcag cagcaacagc agcagcacag 2701 gctcactcac agcttcccat ggccgctgtg ccaccgttga gctcaacagc cagcacgctg 2761 caaaagacag cggcccgggc agcccttgcc gctctggccc agacccagac acagacccag 2821 acccagaatc acattcagaa tcactcgcag gcaccgcagc cattgcaggc ctatcccgtg 2881 cgcccgggtt tcccacagcg catcctttcg ccgcctcatc gcgagccacg cagctgctcc 2941 ccacagccgc cgcagcatgt ggcaccacag cacaacacga acacgagcat gatgagcaac 3001 cacagcaaca acaaacttca actgcaacag ccggtgggca gcgacaccaa tgcggaggac 3061 accagcaacg atgtgtccga aattggcacc atatccgatc tgaccacgcc ggaagcggtg 3121 gccctggccc tggccaatga ggccctggca gtcagcagat cggcaacggc cacgccacca 3181 atgcacacag cagccacagc accaccgaca gcctgctgct caacaacagc agcagcagca 3241 gcaggaggag cagcaggagc tggagtagga cttggtgtgg gtgtgggtgt gggtgttgga 3301 ccactgagtc tacacacaaa atcatcgaca tttgattacc tctacgagtt ctcggagacg 3361 cgcaaagtgc tagaggagtt cttcaagtgc ccctcgaccg acgagcagcc catcatggag 3421 aacggcagcg atgtggacag cattgacatc cagtacgagt tccacagcaa ctttgagcgc 3481 gacgaggagg agctggtcga ggaggaggat gaggacgagg atgacgacgg cgatggcgac 3541 gatgaggaga acgatgaggc agaggacgag gacgaagccg ttgcgcagga cccggagcat 3601 gacgaggact atcagcagca gccaggcccc tgctcagatc tgaccagaga ggcggagcgt 3661 catgtctacg gcggatacgc tcagccgcag ctgcagatgc agttgcagtt gcagctgcag 3721 aggtcagccc atgcccgtgg cagcggcagc ccactgatgc gggactttga cttcttcctc 3781 gactccgcca gccgaagcag cggcgagcgg gacggcgaac aggatggcct caatcacaac 3841 caactgctga gcaccggcag cggcagtggg ctcggccaga gcgtgggcgg gggcgggggc 3901 gtgggcgtgg gccctgccgg tggccacaac taccgctact cgccggagac caccgactac 3961 gactccaact gtggcgatct ggacagtctc tctggggaga tgaacggcgg cggcgtgtcc 4021 acctcgtgct cgaactacgc caagtactat gcctcggcca tgcccgtgct ggaggatggc 4081 ctctcctcgg gccacaccag cgacaccgag aacaacaaca acaagaatct gcagctggcc 4141 ggcgtgcagg ggggtcaggg tcaggtacag ggacagcagt gccccaacag cctgagtgcc 4201 agcaccagca tcggtggcag cggcggcatc tccatgctga tggacatgaa gcgcctgtcc 4261 accaacaaca gcctcaatag catgcacaac ctgaccaccg cctccaccac ggacagcaat 4321 ggcggccagg ggggccaggg gggccacccc gtcagcagtc ccagtcccag caacggccat 4381 gccaagcagc caccgcccat gccacagccc cgggagctgc tcggccagag tcccagccag 4441 acgcagagcc acagccagaa caaagtgttc aagaacatcg atcccgacct ggactcgctc 4501 tattcgatca gtgttttcca tcggccggac acggtgcaga tgacgccgcc gccaccggct 4561 ccggcgccgc atcgcaagcc caatagcagc agcgccgcag acattgatct gctgcagccg 4621 agcagcaagc acacgcccct ggcggcggcc atcagctcca cgctgcagcg cagctcgccc 4681 accaccccat ctgggactgg gactgggact gggtctgggc ccagtaagcc gagaagtgcg 4741 gctagcaacg gcagcagcag caatggcaat gccaatggca acggagtacc accgccaatt 4801 ccggaaagaa gcagcctcat tccggcacaa cagcagcaac agcgatcacc ttcgccggtg 4861 attagctcac ccgtgtggct gtcccggcac ctggacggtg gtgttggcaa ggggctgctc 4921 gagtccggct cggacaacca ctcgaagaat cacagtgcgg acgaggacga tgtggacacc 4981 gatctggaga cggaccggct gctgggacac cagcggctgg acgatcaggg ctactacgac 5041 gagaacaaga gctgggaccg caagccgcgc tcctcgctgc tctccaagat ctcgcccaaa 5101 cagcagatgc ccagcacgaa gacgcgcaac ggctacaatg cgctgctgag ctccacgccg 5161 gagctgctgc cgccgccgcc cataccccca aagagctcca ccggcagcgg cggcaagctg 5221 ctcgaccttg tcggtggcat ggtccagcgc agcatatcac gcagctcctc ggagcacagc 5281 gagaaatcgc ccagcaagtt gcaggcacag cagcagcagc aacagctgca gcagtctggc 5341 tcaatcggcg accctgtgga tgtggtggcc tcggccgtgg gggctgcctc agtggctgca 5401 gcggtggcaa cggcaccgcc catggaaaga cccggcaatg gggggcggtg gggtggagga 5461 tctgaacgtt ccgtcaacgg tggcgctggc atcatcaagc tggaggcgga gaacggcggc 5521 agcctcaatg gaggcatcac catcagcagc gcggcagtga ccggaggcgg agtaaccgga 5581 ggaggcagca atgtggccgc caatccgggc gccgtcacca caacagtcaa tgcgggcagc 5641 aacaacagca gcggcagcgg cgccggcagc aacagcaacg cggctgcggg cggcagcggc 5701 gagaaaaaag tgaaaaagag taagagcaaa gaaggcggcg cagtgctcat cgagggcgtg 5761 ctcttcaggg ccaagtactt gggctccacg cagctggtct gcgagggtca gcccacaaag 5821 tcgacgcgca tgatgcaggc cgaggaggcc gtctcccgta tcaaggccct ggcacccgat 5881 ggcgatgttc agcccagcac cgaagtggat ctgtttatat caactgaaaa gataatggtg 5941 ctgaacaccg acttgaagga gatcatgatg gatcatgcgc tgcgcacaat ctcctatata 6001 gcggacattg gggatctggt ggtgctgatg gctcgacgcc gctttgtgcc gcaggacatt 6061 gacgacgcac ccaagccaaa tcgtacgccc aagatgatct gtcatgtgtt cgagagcgat 6121 gaggcgcagt tcattgccca gtcgattggg caggcgttcc aggtggccta catggagttc 6181 ctcaaggcca atggcatcga agaccatcga ttcgtcaagg agatggacta ccaggaggtg 6241 ctcaatagcc aggagatctt cggcgatgag cttgagatct ttgccaaaaa ggagctgcaa 6301 aaggaggtcg ttgtgcccaa ggccaagggc gagattctcg gcgtggtcat tgtcgagagc 6361 ggttggggtt ccatgctgcc caccgtcgtc attgccaatc tgatgagctc cggtgcggcg 6421 gcccgctgcg gccagctgaa tatcggtgat cagctgatcg ccatcaatgg actgagcctc 6481 gtcggcctgc cgctctccac ctgccagacg tacataaaga acaccaaaaa ccagaccgtc 6541 gtcaagttta cagtggtgcc ctgcgccccc gttgtcgagg tgaagatcaa gcggccagag 6601 accaaatatc agctgggatt cagtgttcag aacggtgtga tttgcagtct gttgcgcggt 6661 ggcatagccg aacggggcgg tgtccgtgtt ggtcatcgca tcattgagat caacaaccag 6721 agcgtggtgg cagtgcccca cgagaagatc gttaacttgc tcgccacttc agtgggggag 6781 atactcatga agacgatgcc cacatccatg ttccgcctgc tcaccggcca ggagaatccc 6841 atatatattt aagcactggg ctgatcgata gatcgatgat attgttaact acaaaaacca 6901 tat