PREDICTED: Drosophila obscura protein transport protein SEC9-like
LOCUS XM_041591928 1879 bp mRNA linear INV 14-MAY-2021
(LOC121403879), mRNA.
ACCESSION XM_041591928
VERSION XM_041591928.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq; corrected model; includes ab initio.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 4% of CDS bases
frameshifts :: corrected 2 indels
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-352 JAECWW010000165.1 1720926-1721277
353-634 JAECWW010000165.1 1721279-1721560
635-1857 JAECWW010000165.1 1721562-1722784
1858-1879 JAECWW010000165.1 1723393-1723414
FEATURES Location/Qualifiers
source 1..1879
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1879
/gene="LOC121403879"
/note="The sequence of the model RefSeq transcript was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 2 bases in 2 codons;
Derived by automated computational analysis using gene
prediction method: Gnomon. Supporting evidence includes
similarity to: 1 Protein, and 92% coverage of the
annotated genomic feature by RNAseq alignments"
/db_xref="GeneID:121403879"
CDS 95..1879
/gene="LOC121403879"
/note="The sequence of the model RefSeq protein was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 2 bases in 2 codons"
/codon_start=1
/product="LOW QUALITY PROTEIN: protein transport protein
SEC9-like"
/protein_id="XP_041447862.1"
/db_xref="GeneID:121403879"
/translation="MATTTIEAAAAPSAQPQQQQPPAVHLSTADHLSANRSSSCSNTN
SNNNNNHSSSSRSSSRSSSNSSSNNNNNNNPNQNQKSIPIKIPLSERFSSQTSTGSAD
SGVIVSSASQQTLLQQLPPVRSSSGSLSIHGAQPKWQKRRQLLSQDSGIEHVGGTGGG
AGAGARPRPGAPVGGGGVGSSSAAGGEGVSGQSTSSSESLGSSGGGCTNASDPPGGRM
RAASALELSSVGGGATMGGAGGGNALRRIKYKSTNSTGTQGFDVEDRIDEVDICDDDD
DDDDDDLHLVENDEEEEDDGVAVDDVDGEDPEEADTQSDTQSGIVINMGGSGSGSGRN
SNETDQLDQPLPLDKAPLTVAAAAAKRRDIKSLATDGHIYFPLMKISEDPHIDARLIN
RKDGLQDTMYYLDEFGSPKLREKFARKQKQLLAKQQKALLKREREDQRKKRNTTVASN
LAASGMDTTKEHCDTIAMSNSHGTATGTIHKHSSDPNQHHSHLDDDDVQIGVAVDDDE
ELQLDVVKLRGRSHSQGNNLYDASNNTRHQPHRHTHANGDGHEVGQDEEEDIEQGAEP
AFDGDSLDENVKTVTKISRTQSAVFGYT"
ORIGIN
1 aacaatcaaa caaaacaaat ccaaaatcaa cggaaagact ttaaccctta gaaggaaaaa
61 taggacatag gcctggatag agccccaaaa cctgatggca acaacaacca tagaagcagc
121 agcagcgccg tccgcccagc cgcagcagca gcagccgccc gctgtccacc tgtccaccgc
181 tgatcatctg tccgccaaca gaagcagcag ctgcagcaac accaacagca acaacaacaa
241 caaccacagc agcagcagcc gaagcagcag tcgaagcagc agcaacagca gcagcaacaa
301 caacaacaac aacaatccga accaaaacca gaaatccatc cccattaaga tacccttaag
361 cgagcgattc tcatcgcaga cctcgacagg atcggcagac agcggtgtga tcgtctcgag
421 cgcctcccag cagacgctgc tgcagcagtt gccgccagtg cgcagcagca gcggttccct
481 gagcatacac ggagcgcaac ccaagtggca gaagcgtcgc cagttgctca gtcaggacag
541 tggcatcgag catgtgggag gcactggagg aggagctgga gcaggagcac ggccacgacc
601 aggagcgcct gtcggcggag gtggagtggg aagttcgtcg gcagctggag gcgagggcgt
661 gagcgggcag tcgacaagca gcagtgaatc gctgggcagc tccggcggtg gatgcacaaa
721 tgcatccgat ccgccgggcg gacgcatgcg cgcagcctca gccctggagc tgagcagcgt
781 gggcggagga gcgaccatgg gaggagcagg aggaggcaat gccctgcgcc ggatcaagta
841 caagagcacc aatagtaccg gcacccaggg attcgatgtg gaggatcgca tcgatgaggt
901 ggatatctgt gatgatgatg acgacgatga tgatgatgat ctgcacttag tggagaacga
961 tgaggaggag gaggacgatg gtgtggctgt ggatgatgtg gatggagaag atcccgagga
1021 ggcggacacc caatccgaca cacagtctgg gatagtaatc aacatgggcg gcagtggcag
1081 tgggagtggc aggaacagca acgagacgga tcaactggat cagccattgc ccctcgacaa
1141 ggcacccctc acggtggcgg cggcggcagc caagaggcgg gacatcaaga gccttgccac
1201 cgatggccac atctactttc cgctgatgaa gatcagcgag gatccgcaca tcgatgcgag
1261 gctgatcaat cgcaaggacg ggctgcagga caccatgtac tatctggacg agttcggcag
1321 ccccaagctg cgcgagaagt tcgcacggaa gcagaagcag cttctggcca aacagcagaa
1381 ggccctcctc aagcgggagc gcgaggatca gcgcaagaag cgcaacacca cggtggcctc
1441 caatctggcg gccagcggga tggacaccac caaagaacac tgtgatacaa tagccatgtc
1501 caatagccat ggaacagcaa ccggaacgat ccacaagcat agctccgatc ccaatcaaca
1561 tcattcgcat ctcgatgacg acgatgtcca gatcggggtg gccgttgacg atgacgagga
1621 gctacaactg gatgtggtta aattgcgcgg ccgcagccac agccaaggca acaacctcta
1681 cgatgctagc aacaacaccc gccaccaacc ccaccgtcac acccacgcca atggggatgg
1741 ccacgaagtg ggtcaggacg aggaggagga tatcgagcag ggggccgagc ccgctttcga
1801 tggcgatagc ctcgatgaaa atgttaagac tgtcacaaag atatccagaa cgcagtcagc
1861 tgtttttggc tacacctag