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LOCUS XM_041591921 5648 bp mRNA linear INV 14-MAY-2021 protein (LOC111070665), mRNA. ACCESSION XM_041591921 VERSION XM_041591921.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-224 JAECWW010000165.1 356804-357027 c 225-741 JAECWW010000165.1 353231-353747 c 742-2047 JAECWW010000165.1 351924-353229 c 2048-2573 JAECWW010000165.1 351326-351851 c 2574-4558 JAECWW010000165.1 349263-351247 c 4559-5648 JAECWW010000165.1 348105-349194 c FEATURES Location/Qualifiers source 1..5648 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..5648 /gene="LOC111070665" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111070665" CDS 190..5481 /gene="LOC111070665" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: polyhomeotic-proximal chromatin protein" /protein_id="XP_041447855.1" /db_xref="GeneID:111070665" /translation="MDRRALKFMQKRADTESDTTTTATTVTAPGSSLATAPAGGGTLP LKDNSNIREKPLHNSNNNNNNNHNNNNNNNSSQQQPSKQHERPLKCLETLAQKAGITF DEKYDVASPPHPGIAQQPSSTPSAATAQAQAHRNGGANTGAGTPPTARRHAHTPVTPN TPSTPNTTSSTTPQHARHNSNPNSASHTMEKSQSPAQQVASATTVPLQISPEQLQQFY ASNPYAIQVKQEFPTHTAGTTTTELKHATGLLDASQASQLQQMQLQQLTAAAADAAGG NGSAGGGGGAQGGGAPSPANQQGQQQQQQQHSTAISTMSPMQLAAATGGVTGDWSQGR TVQLMQPSTGFIYPPMMISGNLLHSAGLGQQPIQVITAGKPFQGNGPQMITTTTQNAK QMIGGQGGFAGGTYAIPSSQSPQTLLFSPVNVISHSPQQQQSLLQSMVAQQQQQQQQL NAQQQQQLNAQQQQQLTAQQAVAMAKAGVGVGVGVGADAQGKMQAQKVVQKVTTTTNT VQAASAGAGGAQSQQQQQQQTTTQQCVQVSQSTLPGVGVGVGVGVGGQLLNPLGGAGA GQAQQMQLGPWFWQNGLQPFGSNSIILRGQPDGTQGMFIQQQPTTQTLQTQQNQIIQC NVTQTPTKPRTQLDALASKQQQQQQQQQQQAAANSQAQQQQQQQQQQQQQLAVATAQL QQQQQQLTALQRPGAPIMPHNGTQVRPASSVSTQTAQNQNLLKAKMRNKQQPVRPALP ALKTENGQVVAVGAVQSKAVGQHMAAVQQQQQQHQQQQQQQQANLHQVVTTAGNKMVV MSTGTPITLQNGQTLHAATAGGVDKQQQQQQQLQLMQKQQFLQQQMFQQQIAAIQIQQ QAAAQQQQQQVAQQQQQQQQQHQQQQQQQQAVAQAQQDQRQQVAQAQAQAQAQVQAQQ HQQQQALAQQILQVAPNTFITSHQQQQQQLHNQLLQQQLQQQAQAQVQAQVQAQAQAQ AQQQQQQQQQQQKQREQQQQQNIIQQIVVQQAAGAGQQQQQQQQQQTQAGQLQLSSVP FSVSSTTTPAGIATSSALQAALSASGAIFQTAKSTSSSSSLPTSSVVTISNHTTGPLV TSSTMAASIHQAQVQQQQHQQQQQQQQQQQQQQQQHQLISASIAAATQQQQQQQQQHQ QQQQGPPALAAASPSPATNPIMAMTSMMNATAGPVTSSGVMSSPATLVAFSAASGGSH PATPTKETPLKMPTPTATLVPIGSPLNSSATSQDHQPSSVNTTPRSAANASASASATA EASSSTSDSSRVNGEAPEASHSSSSTTTTPTKATTSTPTTRQSNVVLPTSSCSTTSST TSSSTTTHSGKDDDKDGAATATSFTSSSAPSTPTTTTVSNGIGIATLARAGSTTVTTT TTTNSSSTATTTPTTTTTTTTSISNGSSNAGGKDLPKAMIKPNVLTHVIDGFIIQEAN EPFPVTRQRYADKDTSDEPPKKKAAMQEEAKPCGIATATPATATTKTPSPTAGSGSAT DMVACEQCGKLEHKAKLKRKRFCSPGCARQAKTGVAGIAAAAGGGVGVGVGESNGMGM EMEIGGIVGVDAMALVDKLDEAMAEEKMQMQTDALQALQPEPMSLVPLSSNTEVPLVS LPVLPVMAGTPVPVPPLVAVALAVPASVALPATPSPGATPPAAAVAPQPPVPAAAPSS SAAGERSPICNWSVDEVADFIRNLPGCQDYVDDFVQQEIDGQALLLLKENHLVNAMGM KLGPALKIVAKVESMKEVVPAPGSGEAKEATAAGGAQ" misc_feature 5212..5418 /gene="LOC111070665" /note="SAM domain of Ph (polyhomeotic) proteins of Polycomb group; Region: SAM_Ph1,2,3; cd09577" /db_xref="CDD:188976" misc_feature order(5266..5271,5371..5376,5383..5388,5395..5397) /gene="LOC111070665" /note="oligomer interface EH [polypeptide binding]; other site" /db_xref="CDD:188976" misc_feature order(5299..5313,5317..5322,5329..5334,5344..5346, 5359..5361) /gene="LOC111070665" /note="oligomer interface ML [polypeptide binding]; other site" /db_xref="CDD:188976" ORIGIN 1 tgttccaaat caaattaaaa tttgaagaaa ctaaacgaaa aggccacggc aatatgctat 61 tattaacaaa agcaagcaga accgccgccg tcgctgccgc aaacatcaga aaactgctgc 121 ctctgccgtc gccgccgccg tcgcatgcat aactttaatt ttttaaatat attgttttta 181 ttttgaataa tggatcgtcg tgcattgaag tttatgcaga aaagagcgga cacagaaagc 241 gatacaacaa caacagcaac aacagtaaca gcaccaggat cctctttggc aacagctcca 301 gcgggaggcg gcacactacc tctgaaggat aactcgaata ttcgcgaaaa gccactgcac 361 aacagtaaca acaacaacaa caacaaccac aacaataaca acaacaacaa cagctcccag 421 cagcagccca gcaaacagca cgagcggccc ctgaagtgcc tggagacgct cgcacagaag 481 gcgggaatca cttttgacga gaaatacgat gtggccagtc ccccgcatcc gggtattgcc 541 cagcagccgt catcgacacc atccgcagcc acagcccaag cccaagccca tcgcaacgga 601 ggagccaaca caggcgccgg aacaccaccc actgcacgtc gccacgcaca cacaccggtc 661 acgccgaaca ccccgagcac tcccaacact accagtagca ccaccccaca gcacgcccga 721 cacaacagca accccaacag cgccagccac acgatggaga agtcacaaag ccccgcacaa 781 caggtggcgt ccgccacgac ggtgcccctg cagatctcac cggaacagct gcagcagttc 841 tacgcgagca acccgtacgc catccaggtg aagcaggagt tccccacgca cacggccggc 901 accactacca cggaactgaa gcatgcgacg ggtctcctgg acgccagcca ggcgagccag 961 ttgcagcaga tgcagctcca gcagctgacg gcggcggcag cggatgcagc cgggggaaac 1021 ggttctgcag gcggtggagg aggagcccag ggcggaggcg cacccagtcc ggcgaaccag 1081 cagggacagc aacagcagca gcagcagcac tcgacggcca ttagtacgat gtcgccgatg 1141 cagctggcgg cagccaccgg cggagtgacc ggcgactggt cacagggtcg gaccgtgcag 1201 ctgatgcagc cttcgacggg gttcatctac ccacccatga tgatctccgg caacctgctg 1261 cactccgcgg gcctcggcca gcagcccata caagtgatca ccgccggcaa gccgttccag 1321 ggtaacggcc cacagatgat caccaccacc acgcagaacg ccaagcagat gatcgggggg 1381 caaggcgggt tcgccggagg tacttacgcc atcccctcca gccagtcacc gcagacgctg 1441 ctcttctcac ccgtcaacgt catctcccac tcgccgcagc agcagcaaag cctcctccag 1501 tcgatggtcg cccagcagca acagcagcag caacaactca acgcccagca gcagcaacaa 1561 ctcaacgccc agcagcagca gcagctgacg gctcagcagg cggtggccat ggccaaggca 1621 ggagtgggag tgggtgtggg tgtgggagcc gacgcccagg gcaagatgca ggcgcagaag 1681 gtggtccaga aggtgaccac caccaccaac acggtgcagg ctgcgtcggc aggcgctggg 1741 ggggcacagt cgcagcagca acagcagcag caaaccacca cccagcagtg cgtccaggtc 1801 tcgcagtcga cactgcccgg cgtgggagtg ggtgtgggtg tgggcgtggg cgggcagctg 1861 ctgaatccgc tgggcggtgc cggcgcgggc caggcgcagc agatgcagct cggtccctgg 1921 ttctggcaga acggcctgca gcccttcggc tcgaactcca tcatcctgcg gggccagccg 1981 gacggcactc agggcatgtt catccagcag cagcccacca cgcagaccct ccagacgcag 2041 cagaaccaaa tcatccagtg caatgtaacc cagacaccta ccaagcctcg cacccagctg 2101 gatgccctgg cttccaagca acagcagcag cagcaacaac aacagcagca ggcggcggcc 2161 aacagtcaag cgcagcagca gcaacaacaa caacaacagc agcagcagca gctggcggtg 2221 gccacggccc aactgcaaca acagcagcag cagctgacgg ccctgcagcg tcctggcgca 2281 ccgattatgc cccacaatgg aacgcaggtg cgcccggcca gctccgtgtc cacgcagacg 2341 gcgcagaacc agaacctgct gaaggccaag atgcggaaca agcagcagcc tgtccgtccg 2401 gcgttgccgg ccctcaagac ggagaatggt caggtggtgg cggttggtgc ggtgcagagc 2461 aaggcagtgg gccagcacat ggctgccgtt cagcagcagc aacagcagca ccagcagcaa 2521 caacagcaac aacaggcgaa ccttcaccag gtggtcacca cagcgggaaa caagatggtc 2581 gtgatgagca cgggcacgcc cataaccctg cagaatggcc agaccctgca tgcagccact 2641 gcgggcggag tggacaagca gcagcaacag cagcagcagc tgcagctcat gcagaagcag 2701 cagtttctgc agcagcaaat gttccaacag cagatagccg ccatccagat ccagcagcag 2761 gcagcagcac aacagcagca gcaacaagtc gcccagcagc aacagcagca gcaacaacaa 2821 catcagcaac aacagcagca gcagcaggcg gtggcccaag cgcagcagga tcagcggcaa 2881 caggtggcac aggctcaggc tcaggcccaa gctcaggttc aggcgcagca acatcagcag 2941 caacaggccc tggctcagca aatactgcag gtagcgccca acaccttcat cacctcccac 3001 caacagcagc agcagcagct ccacaaccaa ctgcttcagc agcagctcca gcagcaggca 3061 caggctcaag tgcaagctca ggttcaggct caggctcagg cacaggcaca gcagcagcaa 3121 caacaacagc aacaacaaca aaaacaacgg gagcagcagc agcagcagaa catcatccaa 3181 caaattgtgg tgcagcaggc ggctggggca ggccaacagc aacaacaaca gcaacagcag 3241 cagacgcagg cgggacaatt gcagctgagc agcgtcccct tctcggtatc ctcgaccacg 3301 acgcccgcag gaatagccac ctcgagtgcc ctccaggccg ccctctcggc ctctggcgcc 3361 atcttccaga cggccaagtc gaccagcagc agctcctctc tgcccaccag cagcgtagtg 3421 acaataagta accacacaac gggtcccctg gtcaccagca gcacgatggc agccagcatc 3481 caccaagccc aggtccagca gcagcaacac caacagcagc agcagcaaca acagcagcag 3541 caacagcaac agcagcagca tcagttaatc tccgccagca ttgcagcggc cacacagcag 3601 cagcagcaac agcaacagca gcatcaacaa caacagcagg gaccacccgc tctggcggct 3661 gcatcgccct cacccgccac gaaccccatc atggccatga catccatgat gaacgccacg 3721 gctggacctg tcaccagcag cggagtgatg tcctctcctg caacgctggt cgcgttcagc 3781 gctgccagtg gaggtagtca tccggcgaca cccaccaagg agacgccgct gaagatgccc 3841 acccccaccg ccaccctggt gcccattggg tcccctctaa acagcagcgc cactagccag 3901 gatcaccagc catcgtccgt caacaccacc cccagatccg ctgcaaacgc cagtgccagt 3961 gccagtgcca ccgcggaggc aagtagctcc acgagtgact cctccagggt gaatggagag 4021 gccccggagg cgtctcatag cagcagcagc accaccacca cgcccacgaa ggccaccacc 4081 agcacgccca ccacaaggca gagcaatgtg gtgctgccca cgagtagctg cagcaccacc 4141 agcagcacca ctagctcctc cacaaccacg cacagcggaa aggatgatga caaggacgga 4201 gcggctacag ccaccagctt caccagcagt agcgcacctt caacgccgac cacgacgaca 4261 gtcagcaacg ggattgggat agcaaccctg gccagggcag ggagcaccac tgtgaccacc 4321 accacgacga ccaacagcag cagcactgcg acgactacac ccacaactac aactacaacg 4381 acaacgagca tcagcaatgg gagcagcaac gcgggaggga aggatctgcc gaaggccatg 4441 atcaagccca atgtgctgac ccatgtcatt gacggattca tcatccagga ggccaacgag 4501 cccttccctg tgacgaggca gcgctatgct gacaaggaca ccagcgacga gccgccaaag 4561 aaaaaggctg ccatgcagga ggaggcgaag ccatgcggaa tagccaccgc aacgccagcc 4621 acagccacaa ccaaaacccc atccccaaca gcaggcagtg gcagtgcgac ggacatggtg 4681 gcctgcgagc agtgcggaaa gctggagcac aaggcgaagc tcaagcggaa gcgcttctgc 4741 tccccaggct gcgccaggca ggcgaagact ggtgtcgcag gcattgcggc agcagctgga 4801 ggcggagtgg gagtgggagt aggagagagc aatggaatgg gaatggaaat ggaaattgga 4861 ggaattgtgg gagtggatgc catggcgctg gtggacaaac tggacgaggc catggccgag 4921 gagaagatgc agatgcagac ggacgcactg caggcgctgc agcccgaacc gatgtccctt 4981 gtgccattgt caagcaacac ggaggtgcca ctggtgtccc ttcctgtcct gccagtcatg 5041 gcaggcaccc ccgttccagt ccctccccta gttgcagtcg cactcgcagt tcccgcttcc 5101 gtggcgctgc ctgcgactcc gtctccgggt gccacaccac cagctgcagc ggtggcgccc 5161 cagccaccag taccagcagc agcaccctcc tcgagcgcag cgggcgagcg ttcgcccatc 5221 tgcaactgga gcgtggacga ggtggctgac ttcatacgga acctgccagg ctgccaggac 5281 tatgtggacg actttgtcca gcaggagatc gacggccagg cgctgctgct gctcaaggag 5341 aatcacctgg tgaatgccat ggggatgaag ctgggccccg ccctcaagat tgtggccaag 5401 gtggagtcca tgaaggaggt ggtcccggcg ccgggctctg gcgaggccaa ggaggcaacg 5461 gccgcgggag gagctcaata ataccagcct gatgctccag ccgatgccat tgccgaggca 5521 gatgacgagg acattcccat gccctcctac tcgacatctc cgccaccatt ctcgcttctc 5581 cgtctccggc ttacgtacgg atcgaggcaa cagagggaat tgccagaggg aactgggctg 5641 gtggagca