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LOCUS XM_041591916 6094 bp mRNA linear INV 14-MAY-2021 transcript variant X1, mRNA. ACCESSION XM_041591916 VERSION XM_041591916.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6094 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6094 /gene="LOC111066365" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111066365" CDS 283..5778 /gene="LOC111066365" /codon_start=1 /product="protein sprint isoform X1" /protein_id="XP_041447850.1" /db_xref="GeneID:111066365" /translation="MSHDTATNVGGGAAGAGAGAGGAPSVVECSDASSKVEVIVYTKS DKTLKQNMNAKDETLRKRTSLIIVPQQVDVDDDDDPNQNQMQTHGNATSKQEELLLEN GNRNSIASMDSNQSSASSTRTTSSSSSSSSGSTTSEDAHAAYEDLQNGNAGPPPPRSI SNLSSSSSESTSCSSSVDYSLREQLKNLANRSGAETADRHSLPTNAGGLQLLKAMPSA TGPHCDALLSPQEAPLGRRYAEVSQFKAHGKARTSEPLASVAIGGVVTAAPQSNAAES VNGGNSANTASTNNNNNNNNNNINSSNNNHNGQQSQKSQQQQQQQQQSNLQNGVNVGS MTTSSGTSHGAAAAVAVESSNQNGDSRSHRHSSSLEPTTDIEDVVDMAQGGDVFEDDT EALLPKCSRRSRDELSQSRTSLVSSSEGGILAEGETSSEDERDEETSRDSSDNSPPCD LGLGERLLLTHPMWFLPGIQRSGAVHLLQGKEEGTFIVRGSSQPNTMAVSVRLPLDTG PYIEHYLIQSHDNVLSLESSRFTFGSIPSLIAHYAQCCDELPVQLMLPRLLREANNRK KLSSLALLGQEFWSYASSPAVLGPPTLVGPSRAAPQDTQSCDAKSPLSLTETSGLGTA TFFSDAGPKPPATAPPAPGGNGNGSLFSPTGSGQLMGFFSQAGTPSDTTNSSMSSFTT SGGQHMQLLSPNSVDSVILTMSPVEGQGPAGYLPPGGPPPPISCPLAGTAAAAAGIGQ QMSTFKVLPIEGGGGGGAGAVDQVRPQRPKPPNTLNLKPPAPPLRWSKPHSPDQLANG NGNGNGNGNSNFTVTTTVTFSMESGNGSSGGGGIGGNTGGKFVEVTTPASSNPFNALL NGQASTFQTFAKRLSPEGECKDTLSSQGSSSTNDSRWQLHSSRDSSHRKILSPQTPNS SSSGGGGGGGGKSRKSRAGKESQHYKESDILESPPLQYCASALSDKISDYEDVWSHDP SDRASLLTSFKPTPQDGVLNRRPDLLAETPSTPTAQTLPHLTPCEEETIGDAAAAAAA KDSSQQLLQFSGDAPPRSRAGLLLPNLSLVGSQATAPPPAMSQSLTEPGDDGGEITPT AAQTPGSRSKQGSPFYAEPADALRQAGLTSAATAILRRQHRSQVMHANQRHSEPLKGG LGGTTAALLLPSDLEKLAGSLDELKQKPQQQQQHQQQHQQQPTTKRARNRIDHWQLDS SWEFMAKQDTTGEAYDASVQDWQEKENSLGRDKDGGLGKKRPPLTVHQIIAKRLPDLN LPELVRCSTPPQTMAGNGTATGAAPLQPLVQGQERDGSGSQKSFQSQNVGCRLSSYDN VFCQNSMFGGIDSAQSDDGTIFSEPWDSSQWDSFLPHDDTTLNSDTIHLSKCRPALSE DDTIVEELSSTKDGSNSSCNQDTLKANRNGAGHHNHNHNHNNCSAKANSRPKVATILR NPSMRDREVLCHPRNKMNIQSSGPGDSLRAYTLQLAQDPSSTFARNIENFISCTKESR EAAPQVVMRNMRQFMSGMKNYLVKHGEGKFHAELESARGRLKADEFLNLDAMLETVMH QLVVLPLREHLYGIFVDYYTRSEDIQLLAQNVRYACEREAADFGIRPTVTPPSQTALR LIANLLWRLQEAELPLDKLELFLCVISTVFDATGCPRGQQLGADDFLPVLVYVVAKCG FVGAEIEAEFMWGLLQPTLLNGEPGYYLTALCSAVQVLKTFMASEGESGSGSLDWRSS CLPACSSVLRVIIPDECNGSLQTRTLPVRPHTTTREVCRIIAHKARITNPQDYALFKL VDGEETLLSDAECPQDARLAAKGKHCMLAYKRIDAKIAWPTTQPTGH" misc_feature 1639..1932 /gene="LOC111066365" /note="Src homology 2 (SH2) domain; Region: SH2; cl15255" /db_xref="CDD:472789" misc_feature order(1693..1695,1747..1749,1819..1821,1825..1827) /gene="LOC111066365" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198256" misc_feature order(1822..1824,1903..1905) /gene="LOC111066365" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198256" misc_feature 5116..5412 /gene="LOC111066365" /note="Vacuolar sorting protein 9 (VPS9) domain; Region: VPS9; pfam02204" /db_xref="CDD:460489" misc_feature 5482..5736 /gene="LOC111066365" /note="Ras-associating (RA) domain of Ras and Rab interactor (Rin) protein family; Region: RA_Rin; cd01776" /db_xref="CDD:340474" ORIGIN 1 ggcttgtctc ttttgcgccg tcgttcggtt cgctcgtcgt cgcggtctct acgctcaatt 61 ttcgatgcga tttcgcgaat tttgtgtttg caaactatga aaatgccagt gaaaatgtgc 121 ttaatcatgc acaaggttgc attttaaaca attgatgaaa ccattttcgc ctgcaaaaga 181 acttatcgtc agcgagaaag caggagagag agagggagag agagtaagcg agaaagagag 241 aaccaacaca caagaaagaa aagctttttg ctcatcacga gaatgtcgca cgacacggcc 301 acaaacgtcg gaggaggagc agcaggagca ggagccggag caggaggtgc tccatctgtg 361 gtggagtgca gcgatgcctc ctccaaggtg gaggtgattg tctacacaaa gtcggacaag 421 acactcaaac agaatatgaa cgccaaggat gagacgctca ggaagcgcac atccctgatc 481 attgtgccac agcaggtgga tgtagacgat gatgatgatc caaatcagaa tcagatgcag 541 acccatggca atgccacatc taaacaggag gaattgctgc tggagaatgg caatcgcaat 601 tcgattgcca gcatggacag caatcagtca tcggcctcca gtacgaggac taccagtagc 661 agcagcagca gcagcagcgg tagcaccact tcggaggatg cccatgccgc ctatgaggat 721 ctacagaatg gcaacgctgg cccaccccca ccacgctcca tctccaactt gagctcctcc 781 tcctccgagt ccacctcctg ctccagctcc gtggactact ccctgcggga gcagctcaag 841 aacctagcca atcgcagtgg ggccgagacc gccgatcggc actcgctgcc caccaatgct 901 ggtggcctac agctgctcaa ggccatgcca tcagccactg gcccgcactg cgatgctctg 961 ctcagtcccc aggaggcgcc cctgggcaga cggtacgccg aagtgtcaca attcaaggca 1021 cacggcaagg cgagaacaag tgaaccgcta gcatcggtgg ccattggtgg agttgtgaca 1081 gccgcaccac agagcaacgc ggcggagtca gtgaacggcg gaaactctgc caacactgcc 1141 agcaccaaca acaataacaa caacaacaac aataatatca acagcagcaa taacaatcac 1201 aatggccaac agtcacaaaa atcccaacag cagcagcagc agcagcagca gtcgaacctt 1261 cagaacggag taaacgttgg ctccatgacc acatcctccg gcacaagcca tggggcggcg 1321 gcagcggtgg cggtggaatc atcgaatcag aacggagaca gccgcagcca tcggcacagc 1381 agcagcctgg agccaacaac ggacatcgaa gatgttgttg acatggccca aggcggcgat 1441 gtcttcgaag atgacacaga ggccctgctg cccaagtgtt cgcgccgatc ccgggatgag 1501 ctcagtcagt cacgcacatc tctggtgtcg agctccgagg gcggcatcct ggccgagggc 1561 gaaacctcca gcgaggatga acgcgatgag gagaccagtc gcgattccag cgacaattcg 1621 ccgccctgcg atctgggtct gggcgagcgg ctgctgctca cccatcccat gtggttcctg 1681 ccgggcatcc aacgttcggg ggccgttcat ctgctgcagg gcaaggagga agggaccttc 1741 attgtgcgcg gctccagtca gcccaacacg atggccgtgt cggtgcgcct gcccctggac 1801 acgggcccct acatcgagca ctatctgatc cagtcgcacg acaatgtgct cagcctggag 1861 agctcgcggt tcacgttcgg ctcgataccc tcactgatcg cccactatgc ccagtgctgc 1921 gacgagctgc ccgtccagct gatgctgcca cggctgctgc gcgaggccaa caaccgcaag 1981 aagctctcct cgctggccct gctcggccag gagttctgga gctatgccag cagtcccgcc 2041 gtcctcggtc cgcccacgct agtgggcccc tcaagggcag cgccacagga cacccaatct 2101 tgcgatgcca agtcgccgct gtcccttacg gagacgagcg gtctgggcac ggcaactttc 2161 ttcagcgatg cagggccaaa gcccccggcc acagcgcccc cggcacccgg tggtaatggc 2221 aatggcagcc tctttagtcc cacgggcagc ggacagctga tgggcttctt cagccaggcg 2281 ggcacgccct cggacacgac aaactccagc atgagctcgt tcaccaccag cgggggccag 2341 cacatgcagc tgctgagccc caattccgtg gactcggtta tactgaccat gtcgcccgtg 2401 gagggccagg ggccagccgg atatctgccg ccaggagggc cgccgccgcc catctcctgc 2461 ccactggctg gaacagccgc agccgcagcc ggcatcggcc agcagatgag caccttcaag 2521 gtgctgccca tcgagggagg aggaggagga ggggcaggtg ctgtcgatca ggtgcgtccg 2581 caacgtccga agcctccaaa cacattgaat ctcaagccgc cggcgccacc gctgcgctgg 2641 tccaagcccc actcgccgga tcagctggcg aatggcaatg gcaatggcaa tgggaatggg 2701 aacagtaatt tcacggtgac caccaccgtc accttctcca tggagagcgg caatgggagc 2761 agcggaggag gaggcattgg aggcaacact gggggcaagt ttgtcgaggt gacgacaccc 2821 gcctccagca atcccttcaa cgctttgctc aatggccagg ccagcacctt tcagacgttc 2881 gccaagcgcc tgtcgcccga gggcgagtgc aaggacacgc tgtcctcgca gggctcctcc 2941 tccaccaacg acagccgctg gcagctgcac tcgagccgcg actccagcca caggaagatc 3001 ctctcgccgc agacacccaa cagcagcagc agcggtggcg gcggcggcgg tggtggcaag 3061 tcgcgcaaat cacgcgccgg caaggagtca cagcactaca aggagtcgga catactcgag 3121 agcccgccgc tgcagtactg cgccagcgcc ctcagcgaca agatcagcga ctacgaggac 3181 gtgtggtcgc acgaccccag cgacagggcc agtctgctga ccagcttcaa gccaacgccc 3241 caggacgggg tgctgaaccg tcgacccgat ctgctggccg agacacccag cacacccaca 3301 gcccaaacac tgccgcatct gacgccctgc gaggaggaga ccatcggcga cgctgccgcc 3361 gccgccgccg ccaaggacag cagccaacag ctgttacagt tctctggcga tgcgccgcca 3421 cgctctcggg ccggtctgct tttgccaaat ttaagcctag tcggcagcca ggcaacagcg 3481 ccgccgccag ccatgagcca gtcactgacc gagccgggcg acgatggcgg tgagatcaca 3541 ccgacagcgg cacagacacc gggatcgcgc agcaaacagg gcagcccctt ctacgcggag 3601 ccagcggatg cactacgaca ggcgggcctg accagtgcgg ccacggccat attgcggcgc 3661 cagcatcgca gccaggtgat gcacgccaat cagcggcact cggagccgct caagggagga 3721 ctgggcggca caacggccgc cctgctgctg cccagcgacc tggagaagct ggcaggcagc 3781 ctggacgagc tgaagcagaa gccacagcag cagcagcagc accagcagca acatcagcag 3841 cagccaacga caaagcgggc acgcaaccgc atcgatcact ggcagctgga cagcagctgg 3901 gagtttatgg ccaagcagga tacgacggga gaggcatacg acgcctcggt gcaggactgg 3961 caggagaagg agaactcgct gggacgcgac aaggatgggg gactgggcaa gaagaggccc 4021 ccactgacag tccaccagat cattgccaag cgactgcccg acctcaatct gccggaattg 4081 gttcgctgtt cgacgccacc gcagacgatg gccggcaacg gcaccgccac cggtgccgcg 4141 ccactgcagc cgctggttca gggccaggag agggatggca gcggcagcca gaagtcattc 4201 cagagccaga acgtcggctg tcgcctctcc tcatacgaca atgtcttctg ccagaactca 4261 atgttcggtg gcatcgattc ggcccagtcc gacgatggca ccatattctc agagccctgg 4321 gactcatccc agtgggactc gttcctaccc catgacgaca ccaccctcaa ttcggacacc 4381 attcatctgt ccaagtgcag gcccgccctg tccgaggacg ataccattgt cgaggaactc 4441 agcagcacca aagacggcag caacagcagc tgcaaccagg acacgctcaa ggccaacagg 4501 aatggtgctg gacaccacaa ccacaatcac aatcacaaca attgcagcgc caaggccaac 4561 agtcgaccca aagtggccac cattctgcgg aatcccagca tgcgggatcg tgaagtctta 4621 tgtcaccccc gcaacaagat gaacatccag agcagcggcc ccggcgactc actgcgcgcg 4681 tacacgctgc agctggccca ggaccccagc tccacctttg cccgcaacat cgagaacttc 4741 atcagctgca ccaaggagtc gcgcgaggcg gcgccccagg tggtcatgcg caacatgcga 4801 cagttcatga gcggcatgaa gaactatctg gtgaagcacg gcgagggcaa gttccatgcc 4861 gaactggagt cggcccgcgg ccgactgaag gccgacgagt tcctcaatct ggacgccatg 4921 ctggagacgg tgatgcatca gctggtggtg ctgccgctgc gcgagcatct ctatggcatc 4981 ttcgtggact actatacgcg cagcgaggac attcagctgc tggcccagaa cgtgcgctat 5041 gcctgcgaac gggaggcggc cgactttggc atccggccca ccgtcacacc gccctcgcag 5101 acggccctgc gactgattgc gaatttgctg tggcgcctgc aggaggccga gctgccgctg 5161 gacaagctgg agctcttcct gtgcgtcatc tcgacggtgt tcgatgcgac gggctgtccc 5221 cggggccagc agctgggcgc cgatgacttc ctgcccgtgc tcgtctatgt ggtggccaag 5281 tgcggctttg ttggcgccga aatcgaggcg gagttcatgt ggggcctgct ccagccgacg 5341 ctgctcaatg gggagccggg ctactacctc accgccctct gcagcgccgt tcaggtgctc 5401 aagacgttca tggcctccga gggcgagagc ggcagtggat ccctcgactg gcgctccagc 5461 tgcctgcccg cctgctccag cgtgctgcgg gtgatcatac cggatgaatg caacggctcg 5521 ctgcagaccc ggacacttcc cgtgcggccg cacacgacga cgcgcgaggt gtgccgcatc 5581 attgcccata aggcacggat caccaatccg caggactatg ccctgttcaa gctggtcgac 5641 ggtgaggaga cgctgctcag cgatgccgag tgcccgcagg atgcacgcct ggcggccaag 5701 ggcaagcact gtatgctcgc ctacaagcgg atcgatgcga agatcgcctg gcccaccaca 5761 cagccgacag gacattgagc agcagcagca acagcaacag aatctgaaac tgaaactaaa 5821 tctgaatcag catcctttcc tgccctgccc tgaccggccc taccctgccc catcttgctc 5881 actaaccaag catatttgat taataattta ttattattac attaaaatat acttagtagc 5941 ctgtaagtaa agctaattaa cgctaattaa ttagaaaaca tctaatgtgt actaaacaac 6001 agtattgagt taagcgtcgt gtttttttta tcatcatcat caccctatcc ccaggaaccc 6061 cctccctacc ccgttcctgc accccgttct tttt