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LOCUS XM_041591908 5247 bp mRNA linear INV 14-MAY-2021 (LOC111070651), mRNA. ACCESSION XM_041591908 VERSION XM_041591908.1 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-106 JAECWW010000165.1 394439-394544 107-835 JAECWW010000165.1 394622-395350 836-5247 JAECWW010000165.1 395352-399763 FEATURES Location/Qualifiers source 1..5247 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..5247 /gene="LOC111070651" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111070651" CDS 176..4369 /gene="LOC111070651" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: integrator complex subunit 6" /protein_id="XP_041447842.1" /db_xref="GeneID:111070651" /translation="MTIILFLVDTSSSMCQKAYVNGVQKTYLDIAKGAVETFLKYRQR TQDCLGDRYMLLTFEEPPANVKAGWKENHATFMNELKNLQSHGLTSMGESLRNAFDLL NLNRMQSGIDTYGQGRCPFYLEPSVIIVITDGGRYSYRNGVHQEIILPLSNQIPGTKF TKEPFRWDQRLFSLVLRMPGNKIDERVDGKVPHDDSPIERMCEVTGGRSYRVRSHYVL NQCIESLVQKVQPGVVLQFEPLLPKDSASGSSSSGTNAGAGGGGGGSATQQSSSSSSS SSLSEPTPDIVFQPIKKMIYVQKHITQKTFPIGYWPLPEPYWPDSKAITLPPRDAHPK LKIMTPAVDEPQLVRSFPVDKYEIEGCPLTLQILNKREMNKCWQVIVTNGMHGFELPF GYLKASPTFSQVHLYVLAYNYPALLPLLHDLIHKYNMSPPNDLMYKFNAYVRSIPPYY CPFLRKALVNINVPYQLLQFLLPENVDNYLSPTIANQLKHIKNTAKQDQENLCMKVYK QLKQAKPPYRQVETAKLCTGMALRRDLVRHPLLRDTFAKLHAEIEPVENYTIVVPQLT HQASAKTYRNPFDIPRRDLVEEIARMRETFLRPTLLVAKDSGHCLPISEMGNYQEYLK NKDNPLREIEPTNVRQHMFGNPYKKDKHMVMVDEADLSDVAPMKSPNGNGPGGSPPGS SGSGSSGSSSSGTSSSGGPGGPGMGGGPGGMSGLMLGPHSASGLGKKLDGTSRGRKRK AGPLPRGFEFRRASTDSRSSCSSPRPSSPSDSAPSSPNPAATAACDSSASTSATSTGS GSGSGLTGSGASSGPVSGGRSSPSCFDEDSNSSFASSSSSTEPSSDSGLSLSHSERLG GIGFDFSEEETSDQDTALNGHVHNFINGISDEASAADTEAPPGPGPSPVAPPPSNVLP AAAAPEPIVTATFVPVVGTAAAAAAPQATASATTSGVVVASTVAASLVTPPPLPAVSS TSNGGLGLSGGTGGSGGDTPCSSASANNSSGVLYVPLNGLTTTHAAYSSNRGGGTTCP LGSHLSGLGPAGSHSHKTGISLMSLSGVLPMLNGYTHHGGTLSPPSPLAAVPPTPLAT ATPTSATSSCTGAASGSGSSGSSYFTHNDINDASEISRILQTCHNGTSGSSGSGSGSG GGGGSGSGGGSSSSTLNGNGSPEPDVGDDGESPLSLGIGNSFDALKRLAGGGAASSPH FYWGSGLNHFINNNNNSGSGTAAATGNNNSSISTNNHRNHNNNSPMKTDIKSSPSCSS SPTHNSNSNSNGEVSAAALPILSEEQREAARRHNIDLRLKIFRDIRRPGRDYSQLLDN LGLVKGDHDMRSDFVEMCIGESRRFRRHRMVGSIQEWWDQWQQSQPAIDQQQQQQLQE QSQQPQQQQQEAAAAATKS" misc_feature 185..568 /gene="LOC111070651" /note="von Willebrand factor type A domain; Region: VWA_2; pfam13519" /db_xref="CDD:463909" misc_feature 4055..4240 /gene="LOC111070651" /note="INTS6/SAGE1/DDX26B/CT45 C-terminus; Region: INT_SG_DDX_CT_C; pfam15300" /db_xref="CDD:464626" ORIGIN 1 cagcagcagc agcataagca gagagtagaa gaagaagcgt aaccacgctg agaggagaac 61 agcagcagaa gcaagagaag gatagaaaat agagagtgaa attacgagag attcgcgaag 121 aaagatcaaa gagaattaag ttcaagaaag gacaaaatca aaatcaaaat acgccatgac 181 aatcatactc ttcctggtgg acacctcgtc gtccatgtgc cagaaggcgt atgtgaatgg 241 tgtgcaaaaa acttatctgg acattgccaa gggggcggtg gagacgttcc ttaagtatcg 301 gcagcgcaca caggattgcc tcggcgatcg ctacatgctg ctgaccttcg aggagccgcc 361 ggccaatgtg aaggccggct ggaaggagaa ccatgccaca tttatgaacg aactgaagaa 421 cctacagagc cacggcctca cctcgatggg tgaatcgctg cggaacgctt tcgatctgct 481 caacctgaac cgcatgcagt cgggcatcga tacgtacggg cagggcaggt gcccctttta 541 cctcgagccc tcggtgatca ttgtgatcac ggacgggggc cgctactcct accgcaacgg 601 tgtgcatcag gagatcatac tgccgctgag caatcaaata cccggcacaa agtttaccaa 661 ggagcccttc cgatgggacc agcgcctatt ctcgctggtc ctgcgcatgc ccggcaacaa 721 gatcgacgaa cgtgtcgatg gcaaggtgcc gcacgacgac tctcccatcg agaggatgtg 781 cgaggtgacc ggcggccgct cataccgcgt ccgcagtcac tatgtgctca atcaatgcat 841 cgagagcctc gttcagaagg tgcaaccggg cgtggtgctg cagtttgagc cgctactgcc 901 caaggatagt gccagcggca gcagcagcag tgggacgaac gccggcgcag gtggtggcgg 961 cggcggctcc gcgacacagc aatcgtcctc atcgtcatcc tcctcgtcct tgtcggagcc 1021 cacaccggac attgtcttcc agccaatcaa gaagatgatc tacgtgcaga agcacatcac 1081 acagaagacc tttcccattg gctactggcc gctgccggag ccctattggc cggactcgaa 1141 ggccatcaca ctgccgcccc gcgatgccca tcccaagctg aagatcatga cgccggcggt 1201 ggatgagccg cagctggtgc gcagctttcc ggtggacaag tacgagatcg agggctgccc 1261 cctgacgctg cagatcctca acaagcggga gatgaacaag tgctggcagg tgatcgtcac 1321 caatggtatg cacggctttg agctgccatt cgggtacctg aaggcgtcgc ccaccttctc 1381 gcaggtgcat ctgtatgtgc tcgcctacaa ctatccggcg ctgttgcccc tgctgcacga 1441 cctcatccac aagtacaaca tgagtccgcc caacgatctc atgtacaaat tcaatgccta 1501 tgtgcgctcc ataccgccgt actactgccc cttcctgcgc aaggcgctgg ttaacatcaa 1561 tgtgccgtac cagctgctgc agttcctgct gccggagaat gtcgacaact atctgtcgcc 1621 gaccatagcc aatcagctga agcacatcaa gaacaccgcc aagcaggacc aggagaacct 1681 ctgcatgaag gtctacaagc agctgaagca ggccaagccc ccctatcgcc aggtggagac 1741 ggccaaactc tgcacgggca tggccctgcg tcgagatctt gtgcgacatc cgctgctgcg 1801 ggacacgttc gccaagctgc atgcggagat cgagccggtg gagaattaca cgattgtggt 1861 gccacagctg acgcatcagg catcggccaa gacgtatcgc aatccgtttg atataccccg 1921 gcgggatctg gtggaggaga tagcccgcat gcgtgagacc ttcctacggc ccacgctgct 1981 ggtggccaag gactcgggcc actgtctgcc catctcggag atgggcaact accaggagta 2041 cctcaagaac aaggacaatc cgctacggga gatcgaaccg accaatgtgc ggcagcacat 2101 gttcggcaat ccctacaaga aggacaagca catggtcatg gtggacgagg cggatctcag 2161 cgatgtggcg cccatgaagt cgccgaatgg caacggtccc ggcggctcac cgcccggctc 2221 ttcgggctct ggttcgtccg gctcctcgtc gtccggcact tcatcgagtg gtgggcctgg 2281 gggtcccggc atgggcggcg gtcccggcgg catgtccggc ctaatgctgg gcccccattc 2341 ggccagcgga ctcggcaaga agttggacgg aacctcgcga ggacgcaagc ggaaagctgg 2401 tcccctgccg cgtggctttg agttccgtcg cgcctccacg gactcgcgtt catcctgctc 2461 ctcaccccgc ccctcgtccc cgtccgatag tgcacccagc tcgccgaatc cagcggcaac 2521 ggcggcctgc gactcatccg cgtctacgtc agcgaccagc acgggctctg ggtccggctc 2581 gggcttgacg ggatcgggtg ccagctctgg gccggtatcc ggcggccgtt ccagtcccag 2641 ctgcttcgat gaggacagca acagcagctt cgccagcagc tccagcagca cggaaccatc 2701 gagcgactcg ggcctgtcgc tttcgcactc ggagcgcctg gggggcattg gctttgactt 2761 tagcgaggag gagaccagcg accaggacac tgccctcaac ggccacgtgc acaacttcat 2821 caatgggatc agcgacgagg ccagtgccgc ggacacagag gccccgcccg ggcccggtcc 2881 aagccctgta gccccgccac ccagcaacgt cttgccagcc gctgccgcac ccgaacccat 2941 tgtgacggcc acatttgtgc cggtcgtggg cacagcagca gcagcagctg cgccccaggc 3001 aacggcaagc gctacgacat ccggagttgt agtagcatcg accgtggcag cctctttggt 3061 cacgcctccg ccgctgccgg ccgttagcag caccagcaac ggtggcctgg gactgtccgg 3121 cggtacgggt ggcagtggcg gcgacacgcc ctgctcctct gcgtcggcaa acaactcgag 3181 cggagtgctg tacgtgcccc tgaacggact gacgaccact cacgcggcgt acagcagcaa 3241 ccgaggcggc ggcaccacat gtccgttggg ctcccacctg agcggcctgg gaccggcggg 3301 gagtcacagc cacaagactg gcatctcgct gatgtcgctg tccggcgtac tgcccatgct 3361 caatggctac acgcatcatg gtggcaccct gtcgccaccc tcgccccttg ctgcggtccc 3421 gccaacgcca ctggcgactg caactccaac gtccgccact agcagctgca ccggtgcggc 3481 atcgggatcg ggatcctctg gctccagcta cttcacccac aatgacatca atgatgcctc 3541 tgagatctcc agaatactgc agacatgtca caatgggacc agcggctctt ccggctccgg 3601 ttcgggcagc ggaggaggag gcggcagtgg gagtggcggc ggcagcagca gcagcaccct 3661 gaatggcaac ggcagtccgg agccagatgt aggagacgat ggcgaatccc cgttgtccct 3721 gggtattgga aatagttttg atgccctgaa gcggctggca ggaggcggcg ctgcgagcag 3781 tccccatttt tactggggca gcggactcaa tcattttatc aacaacaaca acaatagcgg 3841 cagcggaaca gcagccgcca ctgggaataa caacagcagc attagcacca acaatcaccg 3901 gaatcacaac aacaatagcc ccatgaagac ggacatcaag tcgagtccaa gctgcagctc 3961 ctcgccgacg cacaacagca acagcaatag caacggggag gtgagtgccg cagcgctgcc 4021 catactgtcg gaggagcagc gggaggcggc gcgtaggcac aacattgatc tgcggctaaa 4081 gatctttcgg gatatacggc ggccgggacg cgactacagc caactgctgg acaacctggg 4141 gctggtgaag ggcgatcacg acatgaggtc cgatttcgtg gagatgtgca ttggggagtc 4201 gcgacggttc cggcggcacc gcatggtcgg cagtattcag gagtggtggg accagtggca 4261 gcagtcgcag ccggccatcg atcagcagca gcagcagcag ctgcaggagc agtcccagca 4321 gccacagcag caacagcagg aggcagccgc cgccgctacc aagagttaac gttggctctt 4381 ttggaactgc tgagcccgag cggtattcgc ctgggcttgg gcgtggtcga gggcgtggcc 4441 atggccaagg gcgaggccgt ggggcgccat cagtctgtga tgtcatcaaa agcaacaaca 4501 acaacaaaaa caacaacaag gagaaccgta taaaccgtat gataacaaat aggagaaaga 4561 aaccgtaaaa accgtacacg taaatcttaa cttaacaata gccgtaatga ataacagtaa 4621 aagtataaat taaacagtat aagagagaca cagcgagaga gagacagaga gagagagagc 4681 aagtacaacg gtaaacgaaa ggcattgaat tctcgtcaat ttccatttat gtaaataatt 4741 gccagaaatc ccctcccccg ttgtcggatc ttaatccgga gatataggcg agagcggaac 4801 cgcaaaaaaa atttgatgtg tatatggggc aatatctcta gttcgtaagg gacactctct 4861 cattctcgag acatatattt ctgagtaggc cagaacgtag aggaagggca aaggcgaacg 4921 gcaaggtata tattctctaa gaaaaaacaa aaaattgtaa ttatatcgta acgattttta 4981 gcctaagccg tagcttgaat actgtacaac ccttacaata ttttgcagtt tttttttttt 5041 attattatga ttattataca catatacaca tatatacata tatatatata gaggatatat 5101 ttaatataat gtaatcccct gatccaattc gtacacctaa ggtccccaaa gcaattacta 5161 taaatagact tataactcga tatagtgttt ataagaggaa gaagagaacg tgtaacattt 5221 gtataagaga gagagagaga gagagag