PREDICTED: Drosophila obscura potassium voltage-gated channel
LOCUS XM_041591900 2249 bp mRNA linear INV 14-MAY-2021
protein Shaker (LOC111074807), transcript variant X8, mRNA.
ACCESSION XM_041591900
VERSION XM_041591900.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2249
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..2249
/gene="LOC111074807"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 4 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 5 samples with support for all annotated
introns"
/db_xref="GeneID:111074807"
CDS 1283..2176
/gene="LOC111074807"
/codon_start=1
/product="potassium voltage-gated channel protein Shaker
isoform X8"
/protein_id="XP_041447834.1"
/db_xref="GeneID:111074807"
/translation="MQMILVAGGSLPKLSSQDEEGGAGHGFGGGPQHFEPIPHDHDFC
ERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILY
YYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEEERPLPDNEKQRK
VWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEED
EVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAIIPYFITLA
TVVAEEEDTLNLPKAPVSPQV"
misc_feature 1415..1795
/gene="LOC111074807"
/note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
(poxvirus and zinc finger) domain superfamily; Region:
BTB_POZ; cl38908"
/db_xref="CDD:453885"
misc_feature 1802..>2110
/gene="LOC111074807"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
ORIGIN
1 tgtttcactc tcacacagaa aaacagaaaa ggaggaaagg aaaggaaaga aaagaaaaag
61 aatcggacca agtgcattgg cataagtcgg ccacaaaaag ttgtccgcaa aagtgataca
121 gccataccag gaaaaaaacc caaataaata aataagcaaa tgcaaagtgg gacacagaag
181 caacatgtgt cccaaccgca gcaaccgctg aaatgtaatt gcaaatgaga gagcaaacaa
241 acaaaaacaa aacaaacaaa aataaacaaa caacgaatca accgcaagct gcagctaaaa
301 aaaaaaaaaa tttaaatcaa gtttgggaag tgtgggaagg gagtctccat ttggagccca
361 ctaggcagct atatacggaa aggtgtgcca tcgatcgacc gataaaaata agcccggggg
421 cgtcgatata cgtccatata cgtcgatata cgatctacgg tagattagca aaagtcacgg
481 aaaaatagca cacaaatttg catgtgacat gcgacacatg aaattataaa ttgaagattt
541 gatgcatgtg atccaaagaa tggtccatgg aattcagaaa gtaaattcaa gaattaccaa
601 gattaccaga agatatttat tagccggcgg tggcgataca gatacagatc tacctacgct
661 cgatatggag gatatgtatc ggatgcttat cgcttatctg tttgatattg gcagcgtttc
721 tatagatatc ggtagtctat cgaaaatgcc acaaacttcc gcaattcaat aagtgacaac
781 accaaatcga taaccaaatg ccgcacagca aatggagctg ccggcaaaca aagaccacaa
841 acgaccacag acaccaaacg gagccgaagt tccgctgctg caaccgctgc cagtgccggt
901 gccgtttcgt gatacagtga aacaaagcta acatcgacgt gcgactgtgc aggggggctg
961 gtgcccagcg agaggacgac caggacgttc agcaggaggc gagtttgagg agtgctttgg
1021 cccgggcagc ggccgtcatg cagctgcagg cggccagggc caaagcgtcg aagccaggag
1081 gccaggaggc ggcattgtag tcagacagtt gcatttatcc catccataga tacgacacta
1141 cgacactcac agatacaaca aaacgacaac gcactcacac cacttcattc tcacacacac
1201 acacacacac acatactcgt acagatcaat acattgactg tgacgtggat tcattcgagc
1261 cgcatataga accaaagcca acatgcagat gatacttgtt gctggcgggt ctttgcccaa
1321 attgagcagt caagacgaag aagggggggc tggtcatggc tttggtggcg gaccgcaaca
1381 ctttgaaccc attcctcacg atcatgattt ctgcgagaga gtcgttataa atgtaagcgg
1441 gctgaggttt gagacacaac tacgtacgct taaccaattc ccggacacgc tgctcgggga
1501 tccggctcgg agattacggt actttgaccc gcttagaaat gaatattttt ttgaccgtag
1561 tcgaccgagc ttcgatgcga ttttatacta ttatcagagt ggtggccgac tacggagacc
1621 ggtcaatgtc cctttagacg tatttagtga agaaataaaa ttttatgaat taggtgatca
1681 agcaattaat aaattcagag aggatgaagg ctttattaaa gaggaagaaa gaccattacc
1741 ggataatgag aaacaaagaa aagtctggct gctcttcgag tatccagaga gttcacaagc
1801 cgccagagtt gtagccataa ttagtgtatt tgttatattg ctatcaattg ttatattttg
1861 tctagaaaca ttacccgaat ttaagcatta caaggtgttc aatacaacaa caaatggcac
1921 aaagatcgag gaagacgagg tgcctgacat cacagatcct ttcttcctta tagaaacgtt
1981 atgtattatt tggtttacat ttgaactaac tgtcaggttc ctcgcatgtc cgaacaaatt
2041 aaatttctgc agggatgtca tgaatgttat cgacataatc gccatcattc cgtactttat
2101 aacactagcg actgtcgttg ccgaagagga ggatacgtta aatcttccaa aagcgccagt
2161 cagtccacag gtatgagatt ctgtttgccc aatactctta tcttcacgca cacccacaaa
2221 cacacagata cacacatgca tatatcaca