PREDICTED: Drosophila obscura potassium voltage-gated channel
LOCUS XM_041591898 1003 bp mRNA linear INV 14-MAY-2021
protein Shaker (LOC111074807), transcript variant X6, mRNA.
ACCESSION XM_041591898
VERSION XM_041591898.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1003
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1003
/gene="LOC111074807"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 6 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 8 samples with support for all annotated
introns"
/db_xref="GeneID:111074807"
CDS 16..930
/gene="LOC111074807"
/codon_start=1
/product="potassium voltage-gated channel protein Shaker
isoform X6"
/protein_id="XP_041447832.1"
/db_xref="GeneID:111074807"
/translation="MAHITTTNGSLSQAPRSLPKLSSQDEEGGAGHGFGGGPQHFEPI
PHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSRP
SFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEEERPLP
DNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTN
GTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDIIAII
PYFITLATVVAEEEDTLNLPKAPVSPQV"
misc_feature 169..549
/gene="LOC111074807"
/note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
(poxvirus and zinc finger) domain superfamily; Region:
BTB_POZ; cl38908"
/db_xref="CDD:453885"
misc_feature 556..>864
/gene="LOC111074807"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
ORIGIN
1 taatggattg cctgtatggc ccacatcacg acgacgaacg gcagtttaag ccaagcgcca
61 aggtctttgc ccaaattgag cagtcaagac gaagaagggg gggctggtca tggctttggt
121 ggcggaccgc aacactttga acccattcct cacgatcatg atttctgcga gagagtcgtt
181 ataaatgtaa gcgggctgag gtttgagaca caactacgta cgcttaacca attcccggac
241 acgctgctcg gggatccggc tcggagatta cggtactttg acccgcttag aaatgaatat
301 ttttttgacc gtagtcgacc gagcttcgat gcgattttat actattatca gagtggtggc
361 cgactacgga gaccggtcaa tgtcccttta gacgtattta gtgaagaaat aaaattttat
421 gaattaggtg atcaagcaat taataaattc agagaggatg aaggctttat taaagaggaa
481 gaaagaccat taccggataa tgagaaacaa agaaaagtct ggctgctctt cgagtatcca
541 gagagttcac aagccgccag agttgtagcc ataattagtg tatttgttat attgctatca
601 attgttatat tttgtctaga aacattaccc gaatttaagc attacaaggt gttcaataca
661 acaacaaatg gcacaaagat cgaggaagac gaggtgcctg acatcacaga tcctttcttc
721 cttatagaaa cgttatgtat tatttggttt acatttgaac taactgtcag gttcctcgca
781 tgtccgaaca aattaaattt ctgcagggat gtcatgaatg ttatcgacat aatcgccatc
841 attccgtact ttataacact agcgactgtc gttgccgaag aggaggatac gttaaatctt
901 ccaaaagcgc cagtcagtcc acaggtatga gattctgttt gcccaatact cttatcttca
961 cgcacaccca caaacacaca gatacacaca tgcatatatc aca