PREDICTED: Drosophila obscura potassium voltage-gated channel
LOCUS XM_041591897 1068 bp mRNA linear INV 14-MAY-2021
protein Shaker (LOC111074807), transcript variant X5, mRNA.
ACCESSION XM_041591897
VERSION XM_041591897.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1068
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1068
/gene="LOC111074807"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 4 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 3 samples with support for all annotated
introns"
/db_xref="GeneID:111074807"
CDS 72..995
/gene="LOC111074807"
/codon_start=1
/product="potassium voltage-gated channel protein Shaker
isoform X5"
/protein_id="XP_041447831.1"
/db_xref="GeneID:111074807"
/translation="MHGATNVRSPAEMRHKKKRSLPKLSSQDEEGGAGHGFGGGPQHF
EPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDR
SRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEGFIKEEER
PLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNT
TTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFCRDVMNVIDII
AIIPYFITLATVVAEEEDTLNLPKAPVSPQV"
misc_feature 234..614
/gene="LOC111074807"
/note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
(poxvirus and zinc finger) domain superfamily; Region:
BTB_POZ; cl38908"
/db_xref="CDD:453885"
misc_feature 621..>929
/gene="LOC111074807"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
ORIGIN
1 ccaggccaag ttgagttcgt gggtcgtcgc gtgcgtgccg gataaaaacc acaaagctgg
61 tgtctggaat tatgcatggg gcgaccaatg tgcgctcgcc agcagagatg cgtcacaaga
121 agaagaggtc tttgcccaaa ttgagcagtc aagacgaaga agggggggct ggtcatggct
181 ttggtggcgg accgcaacac tttgaaccca ttcctcacga tcatgatttc tgcgagagag
241 tcgttataaa tgtaagcggg ctgaggtttg agacacaact acgtacgctt aaccaattcc
301 cggacacgct gctcggggat ccggctcgga gattacggta ctttgacccg cttagaaatg
361 aatatttttt tgaccgtagt cgaccgagct tcgatgcgat tttatactat tatcagagtg
421 gtggccgact acggagaccg gtcaatgtcc ctttagacgt atttagtgaa gaaataaaat
481 tttatgaatt aggtgatcaa gcaattaata aattcagaga ggatgaaggc tttattaaag
541 aggaagaaag accattaccg gataatgaga aacaaagaaa agtctggctg ctcttcgagt
601 atccagagag ttcacaagcc gccagagttg tagccataat tagtgtattt gttatattgc
661 tatcaattgt tatattttgt ctagaaacat tacccgaatt taagcattac aaggtgttca
721 atacaacaac aaatggcaca aagatcgagg aagacgaggt gcctgacatc acagatcctt
781 tcttccttat agaaacgtta tgtattattt ggtttacatt tgaactaact gtcaggttcc
841 tcgcatgtcc gaacaaatta aatttctgca gggatgtcat gaatgttatc gacataatcg
901 ccatcattcc gtactttata acactagcga ctgtcgttgc cgaagaggag gatacgttaa
961 atcttccaaa agcgccagtc agtccacagg tatgagattc tgtttgccca atactcttat
1021 cttcacgcac acccacaaac acacagatac acacatgcat atatcaca