PREDICTED: Drosophila obscura potassium voltage-gated channel
LOCUS XM_041591896 1108 bp mRNA linear INV 14-MAY-2021
protein Shaker (LOC111074807), transcript variant X4, mRNA.
ACCESSION XM_041591896
VERSION XM_041591896.1
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1108
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1108
/gene="LOC111074807"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 4 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 4 samples with support for all annotated
introns"
/db_xref="GeneID:111074807"
CDS 73..1035
/gene="LOC111074807"
/codon_start=1
/product="potassium voltage-gated channel protein Shaker
isoform X4"
/protein_id="XP_041447830.1"
/db_xref="GeneID:111074807"
/translation="MHGATNVRSPAEMRHKKKRQKQFVMQDNYRMMSLPKLSSQDEEG
GAGHGFGGGPQHFEPIPHDHDFCERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLR
YFDPLRNEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINK
FREDEGFIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLE
TLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKL
NFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQV"
misc_feature 274..654
/gene="LOC111074807"
/note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
(poxvirus and zinc finger) domain superfamily; Region:
BTB_POZ; cl38908"
/db_xref="CDD:453885"
misc_feature 661..>969
/gene="LOC111074807"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
ORIGIN
1 cccaggccaa gttgagttcg tgggtcgtcg cgtgcgtgcc ggataaaaac cacaaagctg
61 gtgtctggaa ttatgcatgg ggcgaccaat gtgcgctcgc cagcagagat gcgtcacaag
121 aagaagaggc aaaagcagtt cgtcatgcag gacaactata ggatgatgtc tttgcccaaa
181 ttgagcagtc aagacgaaga agggggggct ggtcatggct ttggtggcgg accgcaacac
241 tttgaaccca ttcctcacga tcatgatttc tgcgagagag tcgttataaa tgtaagcggg
301 ctgaggtttg agacacaact acgtacgctt aaccaattcc cggacacgct gctcggggat
361 ccggctcgga gattacggta ctttgacccg cttagaaatg aatatttttt tgaccgtagt
421 cgaccgagct tcgatgcgat tttatactat tatcagagtg gtggccgact acggagaccg
481 gtcaatgtcc ctttagacgt atttagtgaa gaaataaaat tttatgaatt aggtgatcaa
541 gcaattaata aattcagaga ggatgaaggc tttattaaag aggaagaaag accattaccg
601 gataatgaga aacaaagaaa agtctggctg ctcttcgagt atccagagag ttcacaagcc
661 gccagagttg tagccataat tagtgtattt gttatattgc tatcaattgt tatattttgt
721 ctagaaacat tacccgaatt taagcattac aaggtgttca atacaacaac aaatggcaca
781 aagatcgagg aagacgaggt gcctgacatc acagatcctt tcttccttat agaaacgtta
841 tgtattattt ggtttacatt tgaactaact gtcaggttcc tcgcatgtcc gaacaaatta
901 aatttctgca gggatgtcat gaatgttatc gacataatcg ccatcattcc gtactttata
961 acactagcga ctgtcgttgc cgaagaggag gatacgttaa atcttccaaa agcgccagtc
1021 agtccacagg tatgagattc tgtttgccca atactcttat cttcacgcac acccacaaac
1081 acacagatac acacatgcat atatcaca