PREDICTED: Drosophila obscura glutamate receptor-interacting
LOCUS XM_022371715 3697 bp mRNA linear INV 14-MAY-2021
protein 2 (LOC111077438), transcript variant X3, mRNA.
ACCESSION XM_022371715
VERSION XM_022371715.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022371715.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3697
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3697
/gene="LOC111077438"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 8 samples with support for all annotated
introns"
/db_xref="GeneID:111077438"
CDS 227..3208
/gene="LOC111077438"
/codon_start=1
/product="glutamate receptor-interacting protein 1 isoform
X3"
/protein_id="XP_022227407.2"
/db_xref="GeneID:111077438"
/translation="MNMLCADVGGSGGGGGGGPAIVEIEYSLLEYTVSQNSLCVSSKL
AQITVERESGCLGLTLRGGADYPLIVTHVRPHGPVYKAGRIKPGDRLLRVDNISLIGK
TLAEAQQIIKCGGVHVSGGYTNLTIEYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVL
CNYTAAMAATGSSSVSGSGSSTPSSGGGGGCGEKMEDLVMVVTQPGVYIASILPASIA
DRCGALSVGDQVLSIDDTMIEHSAYSPDEVMTILDTSSGRGYTQMQIMPAHALARRGH
TALGSPKYSFSTLESRKSTSASASTGRQRQRFARKSSLPLEGLPMAVAAGGGGAAAAG
GGGTGHASSSLGLCRAESFPVLLDCSQGAGIVLGVGGDASQGGCGGAMTIGQILADSV
ADRSGCIQVGDRIVAINKMYSLDAMAMQQLLEGGGSLRHTSNGNGNGNGHGNGHGSNG
NISNMNAPANWLELEIEFDMPDAVVPSSGVFNVKLLRAGKCGLGLSVSGSSHGGLVIS
DVKMGSPAHRSGSLRAGDILLAVDQHPVQHFNVDSLLKDSQPTQQQQQSSSSPPLSPS
SGTGADFTTLTIKRVVLPDFLPMASSPIYSNCPAGGMTEHDLYSSAYVTAGKYADCIS
LKSRTPQPEYFRLPMQQQQQQQQQQQQLEDQSSSVQMRHVVGGGSFSRSFVGGAGAAN
TQSLTTELPEEEDEQDEEEHEQLYTGYELNRYASVDCTALPPPMESKVYGSAASSSSK
SSGSSLHQIIFTVRLEPKGGLLGITLAGSEDITKPITISGLVEGGIGHKNGQIHVGDQ
LLAIDEHSVQGMPLSHATSLLQNLGDLVDLKILRSHADLANGSHHLPQTQAIYAKVQR
RPRSPSKESTCNGNGNLNGSANGSANGSTNGSSANGIGNGNGHGGGGGNQRIFHVTLY
KDKVYDDYGFSVSDGLYERGVFINRIRSGGPADMCGQLKPFDRIMQVNEMKTQDFDCC
LTVPLIAAAGDKIEMIMQRTE"
misc_feature 353..616
/gene="LOC111077438"
/note="PDZ domain 2 of glutamate receptor-interacting
protein 1 (GRIP1) and GRIP2, and related domains; Region:
PDZ2_GRIP1-2-like; cd06681"
/db_xref="CDD:467169"
misc_feature order(389..409,437..439,446..448,536..538,548..550,
557..562)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467169"
misc_feature 650..1027
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cl49608"
/db_xref="CDD:483948"
misc_feature order(689..709,854..856,863..865,959..961,971..973,
980..985)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467153"
misc_feature 1268..1507
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cl49608"
/db_xref="CDD:483948"
misc_feature order(1310..1330,1379..1381,1388..1390,1481..1483,
1490..1495)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467153"
misc_feature 1667..>1822
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cl49608"
/db_xref="CDD:483948"
misc_feature 2468..2722
/gene="LOC111077438"
/note="PDZ domain 6 of glutamate receptor-interacting
protein 1 (GRIP1) and GRIP2, and related domains; Region:
PDZ6_GRIP1-2-like; cd06683"
/db_xref="CDD:467171"
misc_feature order(2507..2527,2561..2563,2570..2572,2660..2662,
2672..2674,2681..2686)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467171"
misc_feature 2945..3199
/gene="LOC111077438"
/note="PDZ domain 7 of glutamate receptor-interacting
protein 1 (GRIP1) and GRIP2, and related domains; Region:
PDZ7_GRIP1-2-like; cd06685"
/db_xref="CDD:467173"
misc_feature order(2987..3007,3038..3040,3047..3049,3137..3139,
3149..3151,3158..3163)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467173"
misc_feature order(3107..3109,3116..3118,3131..3133,3140..3145,
3152..3157)
/gene="LOC111077438"
/note="GRASP-1 binding site [polypeptide binding]; other
site"
/db_xref="CDD:467173"
ORIGIN
1 tccgcattca aatcaaatga tactggtacc ccactctgtc tggtcgatcg gcggaaacag
61 agagtaaaac cgaaaacatc cctcaaaata acgtaacgat ctttcgtatc cgcccgttgt
121 gggtgccctc aatccggtgg ggcatgcggc ggactttctg gcacctggcg accgcctgca
181 ccagatcgat ggcatctcca ccatcggcct gagcaatcag aaggtgatga atatgctctg
241 tgccgatgtc ggtggcagcg gaggaggagg aggaggaggt cctgccatcg ttgagattga
301 gtactcgctg ctggaataca cagtttccca gaacagtctc tgtgtatcct cgaaactggc
361 acagatcacc gtcgagcggg agagcggctg cctgggtctg acgctgcgcg gtggtgccga
421 ctatccgctg attgtgaccc atgtgcgtcc ccatggacct gtctacaaag cgggacgcat
481 caagcccggc gatcgtttgc ttcgtgtgga taatatctcg ctgattggca agacgctggc
541 ggaggcccag cagatcatca agtgcggcgg cgttcatgtg tccggcggct acaccaatct
601 gaccatcgaa tacgatgtgt ccgttgtcca gagcgtcgaa ttctccatgg gccccctgct
661 catcgagatc gagcgtccca tgaacgacaa gctgggcctt gtgctctgca actataccgc
721 tgcaatggca gcgacgggtt cctcctccgt ctctggctct ggctcgagta caccctccag
781 tgggggcggc ggcggctgtg gcgagaagat ggaggatctg gtgatggtgg tcacccagcc
841 gggtgtctat atagcgagca tactgcccgc cagcattgcc gatcgatgcg gcgccttatc
901 cgttggcgat caggtgctct ccatcgacga caccatgatc gagcattcgg cctacagtcc
961 cgacgaggtg atgaccatat tggacaccag ctcaggacgg ggctacacgc aaatgcagat
1021 catgcccgct cacgctctgg cccgacgcgg ccacacggcg ctggggagtc caaagtacag
1081 cttcagcacg ctggagtcgc gcaagtccac atccgcgtcc gcatcgacgg gcaggcagcg
1141 tcagcgcttt gccagaaaga gctctctgcc gctggaggga ctgccaatgg ctgtcgcagc
1201 tggaggagga ggagcagcag cagcaggagg aggaggaaca ggccatgcca gcagcagcct
1261 gggcttgtgc cgagcggaga gctttcccgt gcttctggat tgcagccagg gtgctggcat
1321 agtgctcggt gttggtgggg atgccagcca gggtggatgc ggtggagcga tgactattgg
1381 ccagattctg gccgattcgg tggccgatcg cagtggctgc attcaggtgg gcgaccggat
1441 cgtggccatc aacaaaatgt acagcctgga tgcgatggcc atgcaacagc tgctggaagg
1501 aggcggctcc ttgcgacaca cttccaatgg gaatgggaat gggaatgggc atgggaatgg
1561 gcatggctcc aatgggaaca tcagcaacat gaatgccccg gccaattggc tggagctgga
1621 gatcgagttc gatatgcccg acgccgtggt gccatccagc ggtgtgttca atgtgaagct
1681 gctgcgcgcc ggcaagtgtg ggctgggcct gagcgtgagc ggctccagcc atggcggcct
1741 ggtcatctcc gacgtgaaga tgggcagtcc cgcccatcgc agtggctctc tgagggcggg
1801 cgacatactg ctggccgtgg atcagcatcc ggtgcagcac ttcaatgtgg attccctgct
1861 caaggactca cagccgacac agcagcagca gcagtcgagc agcagtccac ccctgagtcc
1921 cagcagcggc acgggcgctg actttaccac gctgaccatc aagcgggtgg tgctgcccga
1981 cttcctgccg atggccagca gtcccatcta cagcaactgc ccggcgggtg gcatgacgga
2041 gcacgatctg tacagcagtg cctatgtgac ggccggcaaa tatgcggact gcatctccct
2101 gaagtcacgc acaccacagc cggagtactt tcgcctgccc atgcagcagc agcagcagca
2161 acagcagcag cagcagcagc tggaggatca gtcgtcgtcg gtgcagatga ggcatgtggt
2221 gggtggtggc tcgtttagcc gctcgtttgt gggtggggct ggtgcagcca atacgcagag
2281 cttgaccacc gaactgcccg aggaggagga cgaacaggac gaggaagagc acgagcagct
2341 ctacacgggc tacgaactga atcgctatgc cagcgtggat tgcacggctt tgccgccgcc
2401 catggagagc aaggtgtacg gctcggcggc cagttcgagc agcaagagca gcggcagcag
2461 cctgcatcag atcatcttca ccgttcggct ggagccaaag ggcggcctgc tgggcatcac
2521 actggcgggc agcgaggata tcaccaaacc gatcaccatc agtggcctcg tggagggtgg
2581 cattggccat aagaacggac agattcatgt gggcgatcag ctgctggcca tcgacgagca
2641 ctcggtgcag ggtatgccgc tgtcgcatgc caccagcctg ctgcagaact tgggcgactt
2701 ggtcgacctc aagatactgc gcagccatgc ggatttggcc aacggcagcc accatctgcc
2761 acagacgcag gccatctacg caaaggtgca acgcaggccg cgcagcccca gcaaggagtc
2821 aacctgcaat gggaatggga acctgaatgg cagtgccaat ggcagtgcga atggcagcac
2881 gaatggcagc agtgcgaatg ggattgggaa tgggaatggg catggaggtg gaggtggaaa
2941 tcagcgcatt ttccatgtga cgctgtacaa ggacaaggta tacgatgact atggcttctc
3001 cgtctccgat ggcctgtacg agcgcggagt cttcatcaat cgcatacgca gcggtggccc
3061 cgcggatatg tgcggccagc tgaagccctt tgatcgcatc atgcaggtga acgagatgaa
3121 gacgcaggac tttgattgct gtctgacagt gccgctgata gccgccgccg gtgacaaaat
3181 cgagatgatt atgcagcgaa ccgagtgacg ccccgccctg gacccacgcg tcgcgtcgca
3241 tcgtatcggc ccctgttaaa ctagttgtat gctaagctaa tcctaagtgc catccgcata
3301 accaccacaa aaccaccaaa ccaaaccaaa cgagagctca cccgagaagc ttatcccaac
3361 gagaacggag aacggagaag gggagaagga gaacgaacca aacggctgcc ttgagaacaa
3421 cacctttacc gacaataatg agcatcagaa tatatcatga ttcatgaatc gaatcgtatc
3481 gtatacctac cgctacatcg cttgcctttc cgcatatatc gtacaccgta caccgtatat
3541 cgtatatcgt atcgtatatt tagatcttta tttaggctct gccataacca aataatgccc
3601 tcttaaggta gttctgccat aattatactt taattctatc tctaaacttg ttttctagcg
3661 taaataaata atcttactga aagtttgttc gaaacta