PREDICTED: Drosophila obscura glutamate receptor-interacting
LOCUS XM_022371714 4258 bp mRNA linear INV 14-MAY-2021
protein 2 (LOC111077438), transcript variant X2, mRNA.
ACCESSION XM_022371714
VERSION XM_022371714.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022371714.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4258
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..4258
/gene="LOC111077438"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 15 samples with support for all annotated
introns"
/db_xref="GeneID:111077438"
CDS 356..3769
/gene="LOC111077438"
/codon_start=1
/product="glutamate receptor-interacting protein 2 isoform
X2"
/protein_id="XP_022227406.2"
/db_xref="GeneID:111077438"
/translation="MKLWKSKKPIGGCVPGKSSALKQEQELHHHHHHPHAHPQQLQQH
PQAESNGIALAPMLSVDRAMSPAQSEDSGLAPERGTTYATITLPRNALHLAITFAERN
DLSYPPVVGALNPVGHAADFLAPGDRLHQIDGISTIGLSNQKVMNMLCADVGGSGGGG
GGGPAIVEIEYSLLEYISQNSLCVSSKLAQITVERESGCLGLTLRGGADYPLIVTHVR
PHGPVYKAGRIKPGDRLLRVDNISLIGKTLAEAQQIIKCGGVHVSGGYTNLTIEYDVS
VVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAMAATGSSSVSGSGSSTPSSGGGGG
CGEKMEDLVMVVTQPGVYIASILPASIADRCGALSVGDQVLSIDDTMIEHSAYSPDEV
MTILDTSSGRGYTQMQIMPAHALARRGHTALGSPKYSFSTLESRKSTSASASTGRQRQ
RFARKSSLPLEGLPMAVAAGGGGAAAAGGGGTGHASSSLGLCRAESFPVLLDCSQGAG
IVLGVGGDASQGGCGGAMTIGQILADSVADRSGCIQVGDRIVAINKMYSLDAMAMQQL
LEGGGSLRHTSNGNGNGNGHGNGHGSNGNISNMNAPANWLELEIEFDMPDAVVPSSGV
FNVKLLRAGKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRAGDILLAVDQHPVQH
FNVDSLLKDSQPTQQQQQSSSSPPLSPSSGTGADFTTLTIKRVVLPDFLPMASSPIYS
NCPAGGMTEHDLYSSAYVTAGKYADCISLKSRTPQPEYFRLPMQQQQQQQQQQQQLED
QSSSVQMRHVVGGGSFSRSFVGGAGAANTQSLTTELPEEEDEQDEEEHEQLYTGYELN
RYASVDCTALPPPMESKVYGSAASSSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGSE
DITKPITISGLVEGGIGHKNGQIHVGDQLLAIDEHSVQGMPLSHATSLLQNLGDLVDL
KILRSHADLANGSHHLPQTQAIYAKVQRRPRSPSKESTCNGNGNLNGSANGSANGSTN
GSSANGIGNGNGHGGGGGNQRIFHVTLYKDKVYDDYGFSVSDGLYERGVFINRIRSGG
PADMCGQLKPFDRIMQVNEMKTQDFDCCLTVPLIAAAGDKIEMIMQRTE"
misc_feature 605..802
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cd00136"
/db_xref="CDD:467153"
misc_feature order(635..652,686..688,695..697,779..781,791..793,
800..802)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467153"
misc_feature 914..1177
/gene="LOC111077438"
/note="PDZ domain 2 of glutamate receptor-interacting
protein 1 (GRIP1) and GRIP2, and related domains; Region:
PDZ2_GRIP1-2-like; cd06681"
/db_xref="CDD:467169"
misc_feature order(950..970,998..1000,1007..1009,1097..1099,1109..1111,
1118..1123)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467169"
misc_feature 1211..1588
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cl49608"
/db_xref="CDD:483948"
misc_feature order(1250..1270,1415..1417,1424..1426,1520..1522,
1532..1534,1541..1546)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467153"
misc_feature 1829..2068
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cl49608"
/db_xref="CDD:483948"
misc_feature order(1871..1888,1910..1912,1940..1942,1949..1951,
2042..2044,2051..2056)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467153"
misc_feature 2228..>2383
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cl49608"
/db_xref="CDD:483948"
misc_feature 3029..3283
/gene="LOC111077438"
/note="PDZ domain 6 of glutamate receptor-interacting
protein 1 (GRIP1) and GRIP2, and related domains; Region:
PDZ6_GRIP1-2-like; cd06683"
/db_xref="CDD:467171"
misc_feature order(3068..3088,3122..3124,3131..3133,3221..3223,
3233..3235,3242..3247)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467171"
misc_feature 3506..3760
/gene="LOC111077438"
/note="PDZ domain 7 of glutamate receptor-interacting
protein 1 (GRIP1) and GRIP2, and related domains; Region:
PDZ7_GRIP1-2-like; cd06685"
/db_xref="CDD:467173"
misc_feature order(3548..3568,3599..3601,3608..3610,3698..3700,
3710..3712,3719..3724)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467173"
misc_feature order(3668..3670,3677..3679,3692..3694,3701..3706,
3713..3718)
/gene="LOC111077438"
/note="GRASP-1 binding site [polypeptide binding]; other
site"
/db_xref="CDD:467173"
ORIGIN
1 gaggtgcgtg catcgcgtcg tgttttgttg tgttgttcgc ttcgaatgga atttcgaaat
61 tttgaattga aattaaatta aaaatcgaac cgcgcgcttt tcccccgtct gccacaccac
121 acctccccat ctcatctatt attgcgagaa tgctctgaat ttttcattga attttttttt
181 gctgtttttc tacgtttttt tgtgtgaaaa tgtttttgaa tcttgtgcag attcggttct
241 gcctgggcag acggttcttg gatggtattc tgacatccta ggcaacacct aaaaatcccg
301 cagagagatt taaataccct aaatactgat cccgatcaga actgatcaga aaataatgaa
361 attgtggaaa tcgaagaagc ccatcggggg ttgtgtgccc ggcaaatcct cggccctcaa
421 acaggagcag gagctccatc atcatcatca tcatccacat gcacatcccc agcaactgca
481 gcagcatccg caggccgaga gcaatggaat tgcattggcg cctatgttat ccgttgatcg
541 tgccatgagc ccagcacagt cggaggactc gggattggca ccggaacgtg gcaccaccta
601 tgccaccatc acgctgccac gcaatgccct ccatctggcc atcacatttg cagaacgtaa
661 cgatctttcg tatccgcccg ttgtgggtgc cctcaatccg gtggggcatg cggcggactt
721 tctggcacct ggcgaccgcc tgcaccagat cgatggcatc tccaccatcg gcctgagcaa
781 tcagaaggtg atgaatatgc tctgtgccga tgtcggtggc agcggaggag gaggaggagg
841 aggtcctgcc atcgttgaga ttgagtactc gctgctggaa tacatttccc agaacagtct
901 ctgtgtatcc tcgaaactgg cacagatcac cgtcgagcgg gagagcggct gcctgggtct
961 gacgctgcgc ggtggtgccg actatccgct gattgtgacc catgtgcgtc cccatggacc
1021 tgtctacaaa gcgggacgca tcaagcccgg cgatcgtttg cttcgtgtgg ataatatctc
1081 gctgattggc aagacgctgg cggaggccca gcagatcatc aagtgcggcg gcgttcatgt
1141 gtccggcggc tacaccaatc tgaccatcga atacgatgtg tccgttgtcc agagcgtcga
1201 attctccatg ggccccctgc tcatcgagat cgagcgtccc atgaacgaca agctgggcct
1261 tgtgctctgc aactataccg ctgcaatggc agcgacgggt tcctcctccg tctctggctc
1321 tggctcgagt acaccctcca gtgggggcgg cggcggctgt ggcgagaaga tggaggatct
1381 ggtgatggtg gtcacccagc cgggtgtcta tatagcgagc atactgcccg ccagcattgc
1441 cgatcgatgc ggcgccttat ccgttggcga tcaggtgctc tccatcgacg acaccatgat
1501 cgagcattcg gcctacagtc ccgacgaggt gatgaccata ttggacacca gctcaggacg
1561 gggctacacg caaatgcaga tcatgcccgc tcacgctctg gcccgacgcg gccacacggc
1621 gctggggagt ccaaagtaca gcttcagcac gctggagtcg cgcaagtcca catccgcgtc
1681 cgcatcgacg ggcaggcagc gtcagcgctt tgccagaaag agctctctgc cgctggaggg
1741 actgccaatg gctgtcgcag ctggaggagg aggagcagca gcagcaggag gaggaggaac
1801 aggccatgcc agcagcagcc tgggcttgtg ccgagcggag agctttcccg tgcttctgga
1861 ttgcagccag ggtgctggca tagtgctcgg tgttggtggg gatgccagcc agggtggatg
1921 cggtggagcg atgactattg gccagattct ggccgattcg gtggccgatc gcagtggctg
1981 cattcaggtg ggcgaccgga tcgtggccat caacaaaatg tacagcctgg atgcgatggc
2041 catgcaacag ctgctggaag gaggcggctc cttgcgacac acttccaatg ggaatgggaa
2101 tgggaatggg catgggaatg ggcatggctc caatgggaac atcagcaaca tgaatgcccc
2161 ggccaattgg ctggagctgg agatcgagtt cgatatgccc gacgccgtgg tgccatccag
2221 cggtgtgttc aatgtgaagc tgctgcgcgc cggcaagtgt gggctgggcc tgagcgtgag
2281 cggctccagc catggcggcc tggtcatctc cgacgtgaag atgggcagtc ccgcccatcg
2341 cagtggctct ctgagggcgg gcgacatact gctggccgtg gatcagcatc cggtgcagca
2401 cttcaatgtg gattccctgc tcaaggactc acagccgaca cagcagcagc agcagtcgag
2461 cagcagtcca cccctgagtc ccagcagcgg cacgggcgct gactttacca cgctgaccat
2521 caagcgggtg gtgctgcccg acttcctgcc gatggccagc agtcccatct acagcaactg
2581 cccggcgggt ggcatgacgg agcacgatct gtacagcagt gcctatgtga cggccggcaa
2641 atatgcggac tgcatctccc tgaagtcacg cacaccacag ccggagtact ttcgcctgcc
2701 catgcagcag cagcagcagc aacagcagca gcagcagcag ctggaggatc agtcgtcgtc
2761 ggtgcagatg aggcatgtgg tgggtggtgg ctcgtttagc cgctcgtttg tgggtggggc
2821 tggtgcagcc aatacgcaga gcttgaccac cgaactgccc gaggaggagg acgaacagga
2881 cgaggaagag cacgagcagc tctacacggg ctacgaactg aatcgctatg ccagcgtgga
2941 ttgcacggct ttgccgccgc ccatggagag caaggtgtac ggctcggcgg ccagttcgag
3001 cagcaagagc agcggcagca gcctgcatca gatcatcttc accgttcggc tggagccaaa
3061 gggcggcctg ctgggcatca cactggcggg cagcgaggat atcaccaaac cgatcaccat
3121 cagtggcctc gtggagggtg gcattggcca taagaacgga cagattcatg tgggcgatca
3181 gctgctggcc atcgacgagc actcggtgca gggtatgccg ctgtcgcatg ccaccagcct
3241 gctgcagaac ttgggcgact tggtcgacct caagatactg cgcagccatg cggatttggc
3301 caacggcagc caccatctgc cacagacgca ggccatctac gcaaaggtgc aacgcaggcc
3361 gcgcagcccc agcaaggagt caacctgcaa tgggaatggg aacctgaatg gcagtgccaa
3421 tggcagtgcg aatggcagca cgaatggcag cagtgcgaat gggattggga atgggaatgg
3481 gcatggaggt ggaggtggaa atcagcgcat tttccatgtg acgctgtaca aggacaaggt
3541 atacgatgac tatggcttct ccgtctccga tggcctgtac gagcgcggag tcttcatcaa
3601 tcgcatacgc agcggtggcc ccgcggatat gtgcggccag ctgaagccct ttgatcgcat
3661 catgcaggtg aacgagatga agacgcagga ctttgattgc tgtctgacag tgccgctgat
3721 agccgccgcc ggtgacaaaa tcgagatgat tatgcagcga accgagtgac gccccgccct
3781 ggacccacgc gtcgcgtcgc atcgtatcgg cccctgttaa actagttgta tgctaagcta
3841 atcctaagtg ccatccgcat aaccaccaca aaaccaccaa accaaaccaa acgagagctc
3901 acccgagaag cttatcccaa cgagaacgga gaacggagaa ggggagaagg agaacgaacc
3961 aaacggctgc cttgagaaca acacctttac cgacaataat gagcatcaga atatatcatg
4021 attcatgaat cgaatcgtat cgtataccta ccgctacatc gcttgccttt ccgcatatat
4081 cgtacaccgt acaccgtata tcgtatatcg tatcgtatat ttagatcttt atttaggctc
4141 tgccataacc aaataatgcc ctcttaaggt agttctgcca taattatact ttaattctat
4201 ctctaaactt gttttctagc gtaaataaat aatcttactg aaagtttgtt cgaaacta