PREDICTED: Drosophila obscura glutamate receptor-interacting
LOCUS XM_022371713 4261 bp mRNA linear INV 14-MAY-2021
protein 2 (LOC111077438), transcript variant X1, mRNA.
ACCESSION XM_022371713
VERSION XM_022371713.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022371713.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4261
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..4261
/gene="LOC111077438"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 15 samples with support for all annotated
introns"
/db_xref="GeneID:111077438"
CDS 356..3772
/gene="LOC111077438"
/codon_start=1
/product="glutamate receptor-interacting protein 2 isoform
X1"
/protein_id="XP_022227405.2"
/db_xref="GeneID:111077438"
/translation="MKLWKSKKPIGGCVPGKSSALKQEQELHHHHHHPHAHPQQLQQH
PQAESNGIALAPMLSVDRAMSPAQSEDSGLAPERGTTYATITLPRNALHLAITFAERN
DLSYPPVVGALNPVGHAADFLAPGDRLHQIDGISTIGLSNQKVMNMLCADVGGSGGGG
GGGPAIVEIEYSLLEYTVSQNSLCVSSKLAQITVERESGCLGLTLRGGADYPLIVTHV
RPHGPVYKAGRIKPGDRLLRVDNISLIGKTLAEAQQIIKCGGVHVSGGYTNLTIEYDV
SVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAMAATGSSSVSGSGSSTPSSGGGG
GCGEKMEDLVMVVTQPGVYIASILPASIADRCGALSVGDQVLSIDDTMIEHSAYSPDE
VMTILDTSSGRGYTQMQIMPAHALARRGHTALGSPKYSFSTLESRKSTSASASTGRQR
QRFARKSSLPLEGLPMAVAAGGGGAAAAGGGGTGHASSSLGLCRAESFPVLLDCSQGA
GIVLGVGGDASQGGCGGAMTIGQILADSVADRSGCIQVGDRIVAINKMYSLDAMAMQQ
LLEGGGSLRHTSNGNGNGNGHGNGHGSNGNISNMNAPANWLELEIEFDMPDAVVPSSG
VFNVKLLRAGKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRAGDILLAVDQHPVQ
HFNVDSLLKDSQPTQQQQQSSSSPPLSPSSGTGADFTTLTIKRVVLPDFLPMASSPIY
SNCPAGGMTEHDLYSSAYVTAGKYADCISLKSRTPQPEYFRLPMQQQQQQQQQQQQLE
DQSSSVQMRHVVGGGSFSRSFVGGAGAANTQSLTTELPEEEDEQDEEEHEQLYTGYEL
NRYASVDCTALPPPMESKVYGSAASSSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGS
EDITKPITISGLVEGGIGHKNGQIHVGDQLLAIDEHSVQGMPLSHATSLLQNLGDLVD
LKILRSHADLANGSHHLPQTQAIYAKVQRRPRSPSKESTCNGNGNLNGSANGSANGST
NGSSANGIGNGNGHGGGGGNQRIFHVTLYKDKVYDDYGFSVSDGLYERGVFINRIRSG
GPADMCGQLKPFDRIMQVNEMKTQDFDCCLTVPLIAAAGDKIEMIMQRTE"
misc_feature 605..802
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cd00136"
/db_xref="CDD:467153"
misc_feature order(635..652,686..688,695..697,779..781,791..793,
800..802)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467153"
misc_feature 917..1180
/gene="LOC111077438"
/note="PDZ domain 2 of glutamate receptor-interacting
protein 1 (GRIP1) and GRIP2, and related domains; Region:
PDZ2_GRIP1-2-like; cd06681"
/db_xref="CDD:467169"
misc_feature order(953..973,1001..1003,1010..1012,1100..1102,
1112..1114,1121..1126)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467169"
misc_feature 1214..1591
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cl49608"
/db_xref="CDD:483948"
misc_feature order(1253..1273,1418..1420,1427..1429,1523..1525,
1535..1537,1544..1549)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467153"
misc_feature 1832..2071
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cl49608"
/db_xref="CDD:483948"
misc_feature order(1874..1891,1913..1915,1943..1945,1952..1954,
2045..2047,2054..2059)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467153"
misc_feature 2231..>2386
/gene="LOC111077438"
/note="canonical PDZ domain; Region: PDZ_canonical;
cl49608"
/db_xref="CDD:483948"
misc_feature 3032..3286
/gene="LOC111077438"
/note="PDZ domain 6 of glutamate receptor-interacting
protein 1 (GRIP1) and GRIP2, and related domains; Region:
PDZ6_GRIP1-2-like; cd06683"
/db_xref="CDD:467171"
misc_feature order(3071..3091,3125..3127,3134..3136,3224..3226,
3236..3238,3245..3250)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467171"
misc_feature 3509..3763
/gene="LOC111077438"
/note="PDZ domain 7 of glutamate receptor-interacting
protein 1 (GRIP1) and GRIP2, and related domains; Region:
PDZ7_GRIP1-2-like; cd06685"
/db_xref="CDD:467173"
misc_feature order(3551..3571,3602..3604,3611..3613,3701..3703,
3713..3715,3722..3727)
/gene="LOC111077438"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:467173"
misc_feature order(3671..3673,3680..3682,3695..3697,3704..3709,
3716..3721)
/gene="LOC111077438"
/note="GRASP-1 binding site [polypeptide binding]; other
site"
/db_xref="CDD:467173"
ORIGIN
1 gaggtgcgtg catcgcgtcg tgttttgttg tgttgttcgc ttcgaatgga atttcgaaat
61 tttgaattga aattaaatta aaaatcgaac cgcgcgcttt tcccccgtct gccacaccac
121 acctccccat ctcatctatt attgcgagaa tgctctgaat ttttcattga attttttttt
181 gctgtttttc tacgtttttt tgtgtgaaaa tgtttttgaa tcttgtgcag attcggttct
241 gcctgggcag acggttcttg gatggtattc tgacatccta ggcaacacct aaaaatcccg
301 cagagagatt taaataccct aaatactgat cccgatcaga actgatcaga aaataatgaa
361 attgtggaaa tcgaagaagc ccatcggggg ttgtgtgccc ggcaaatcct cggccctcaa
421 acaggagcag gagctccatc atcatcatca tcatccacat gcacatcccc agcaactgca
481 gcagcatccg caggccgaga gcaatggaat tgcattggcg cctatgttat ccgttgatcg
541 tgccatgagc ccagcacagt cggaggactc gggattggca ccggaacgtg gcaccaccta
601 tgccaccatc acgctgccac gcaatgccct ccatctggcc atcacatttg cagaacgtaa
661 cgatctttcg tatccgcccg ttgtgggtgc cctcaatccg gtggggcatg cggcggactt
721 tctggcacct ggcgaccgcc tgcaccagat cgatggcatc tccaccatcg gcctgagcaa
781 tcagaaggtg atgaatatgc tctgtgccga tgtcggtggc agcggaggag gaggaggagg
841 aggtcctgcc atcgttgaga ttgagtactc gctgctggaa tacacagttt cccagaacag
901 tctctgtgta tcctcgaaac tggcacagat caccgtcgag cgggagagcg gctgcctggg
961 tctgacgctg cgcggtggtg ccgactatcc gctgattgtg acccatgtgc gtccccatgg
1021 acctgtctac aaagcgggac gcatcaagcc cggcgatcgt ttgcttcgtg tggataatat
1081 ctcgctgatt ggcaagacgc tggcggaggc ccagcagatc atcaagtgcg gcggcgttca
1141 tgtgtccggc ggctacacca atctgaccat cgaatacgat gtgtccgttg tccagagcgt
1201 cgaattctcc atgggccccc tgctcatcga gatcgagcgt cccatgaacg acaagctggg
1261 ccttgtgctc tgcaactata ccgctgcaat ggcagcgacg ggttcctcct ccgtctctgg
1321 ctctggctcg agtacaccct ccagtggggg cggcggcggc tgtggcgaga agatggagga
1381 tctggtgatg gtggtcaccc agccgggtgt ctatatagcg agcatactgc ccgccagcat
1441 tgccgatcga tgcggcgcct tatccgttgg cgatcaggtg ctctccatcg acgacaccat
1501 gatcgagcat tcggcctaca gtcccgacga ggtgatgacc atattggaca ccagctcagg
1561 acggggctac acgcaaatgc agatcatgcc cgctcacgct ctggcccgac gcggccacac
1621 ggcgctgggg agtccaaagt acagcttcag cacgctggag tcgcgcaagt ccacatccgc
1681 gtccgcatcg acgggcaggc agcgtcagcg ctttgccaga aagagctctc tgccgctgga
1741 gggactgcca atggctgtcg cagctggagg aggaggagca gcagcagcag gaggaggagg
1801 aacaggccat gccagcagca gcctgggctt gtgccgagcg gagagctttc ccgtgcttct
1861 ggattgcagc cagggtgctg gcatagtgct cggtgttggt ggggatgcca gccagggtgg
1921 atgcggtgga gcgatgacta ttggccagat tctggccgat tcggtggccg atcgcagtgg
1981 ctgcattcag gtgggcgacc ggatcgtggc catcaacaaa atgtacagcc tggatgcgat
2041 ggccatgcaa cagctgctgg aaggaggcgg ctccttgcga cacacttcca atgggaatgg
2101 gaatgggaat gggcatggga atgggcatgg ctccaatggg aacatcagca acatgaatgc
2161 cccggccaat tggctggagc tggagatcga gttcgatatg cccgacgccg tggtgccatc
2221 cagcggtgtg ttcaatgtga agctgctgcg cgccggcaag tgtgggctgg gcctgagcgt
2281 gagcggctcc agccatggcg gcctggtcat ctccgacgtg aagatgggca gtcccgccca
2341 tcgcagtggc tctctgaggg cgggcgacat actgctggcc gtggatcagc atccggtgca
2401 gcacttcaat gtggattccc tgctcaagga ctcacagccg acacagcagc agcagcagtc
2461 gagcagcagt ccacccctga gtcccagcag cggcacgggc gctgacttta ccacgctgac
2521 catcaagcgg gtggtgctgc ccgacttcct gccgatggcc agcagtccca tctacagcaa
2581 ctgcccggcg ggtggcatga cggagcacga tctgtacagc agtgcctatg tgacggccgg
2641 caaatatgcg gactgcatct ccctgaagtc acgcacacca cagccggagt actttcgcct
2701 gcccatgcag cagcagcagc agcaacagca gcagcagcag cagctggagg atcagtcgtc
2761 gtcggtgcag atgaggcatg tggtgggtgg tggctcgttt agccgctcgt ttgtgggtgg
2821 ggctggtgca gccaatacgc agagcttgac caccgaactg cccgaggagg aggacgaaca
2881 ggacgaggaa gagcacgagc agctctacac gggctacgaa ctgaatcgct atgccagcgt
2941 ggattgcacg gctttgccgc cgcccatgga gagcaaggtg tacggctcgg cggccagttc
3001 gagcagcaag agcagcggca gcagcctgca tcagatcatc ttcaccgttc ggctggagcc
3061 aaagggcggc ctgctgggca tcacactggc gggcagcgag gatatcacca aaccgatcac
3121 catcagtggc ctcgtggagg gtggcattgg ccataagaac ggacagattc atgtgggcga
3181 tcagctgctg gccatcgacg agcactcggt gcagggtatg ccgctgtcgc atgccaccag
3241 cctgctgcag aacttgggcg acttggtcga cctcaagata ctgcgcagcc atgcggattt
3301 ggccaacggc agccaccatc tgccacagac gcaggccatc tacgcaaagg tgcaacgcag
3361 gccgcgcagc cccagcaagg agtcaacctg caatgggaat gggaacctga atggcagtgc
3421 caatggcagt gcgaatggca gcacgaatgg cagcagtgcg aatgggattg ggaatgggaa
3481 tgggcatgga ggtggaggtg gaaatcagcg cattttccat gtgacgctgt acaaggacaa
3541 ggtatacgat gactatggct tctccgtctc cgatggcctg tacgagcgcg gagtcttcat
3601 caatcgcata cgcagcggtg gccccgcgga tatgtgcggc cagctgaagc cctttgatcg
3661 catcatgcag gtgaacgaga tgaagacgca ggactttgat tgctgtctga cagtgccgct
3721 gatagccgcc gccggtgaca aaatcgagat gattatgcag cgaaccgagt gacgccccgc
3781 cctggaccca cgcgtcgcgt cgcatcgtat cggcccctgt taaactagtt gtatgctaag
3841 ctaatcctaa gtgccatccg cataaccacc acaaaaccac caaaccaaac caaacgagag
3901 ctcacccgag aagcttatcc caacgagaac ggagaacgga gaaggggaga aggagaacga
3961 accaaacggc tgccttgaga acaacacctt taccgacaat aatgagcatc agaatatatc
4021 atgattcatg aatcgaatcg tatcgtatac ctaccgctac atcgcttgcc tttccgcata
4081 tatcgtacac cgtacaccgt atatcgtata tcgtatcgta tatttagatc tttatttagg
4141 ctctgccata accaaataat gccctcttaa ggtagttctg ccataattat actttaattc
4201 tatctctaaa cttgttttct agcgtaaata aataatctta ctgaaagttt gttcgaaact
4261 a