PREDICTED: Drosophila obscura serine hydroxymethyltransferase
LOCUS XM_022370959 1878 bp mRNA linear INV 14-MAY-2021
(LOC111076908), mRNA.
ACCESSION XM_022370959
VERSION XM_022370959.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022370959.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1878
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1878
/gene="LOC111076908"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 11 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111076908"
CDS 114..1733
/gene="LOC111076908"
/codon_start=1
/product="serine hydroxymethyltransferase"
/protein_id="XP_022226651.2"
/db_xref="GeneID:111076908"
/translation="MQRISLQLPRKLAPVLSRDLNTKTVKFFQRQQPVRAALTKKLPT
APLTPSPALPFAIRRYSEGRNNTTLSLKMEDQKLLQATLEDSDPELANLIKKEKERQR
EGLEMIASENFTSVAVLESLGSCLTNKYSEGYPGKRYYGGNEFIDCIELLAQKRGREL
FNLADDQWGVNVQPYSGSPANLAAYVGVCRPHDRIMGLDLPDGGHLTHGFFTATKRIS
ATSIFFESMPYKVNPATGIIDYDKLAEAAKAFKPQIIIAGISCYSRLLDYARFRQICD
DVGAYLMADMAHVAGLVAAGHIPSPFVYADIVTTTTHKTLRGPRAGVIFFRKGVRSIK
PNGEKVLYDLEERINQAVFPSLQGGPHNNAVAGIATAFKQAKSAEFKSYQSQVLKNAK
VLCEGLMAKGYQVATGGTDVHLVLVDVRKNGLTGAKAELILEEVGIACNKNTVPGDKS
ALNPSGIRLGTPALTTRGLVAKDMDQVVDFIDAALKVGAEAVQAAGSPKMVDYHKVLA
EDATIKAKIEQIHKAVIAFSKQFPLPGLKTL"
misc_feature 354..1721
/gene="LOC111076908"
/note="serine hydroxymethyltransferase; Provisional;
Region: PLN03226"
/db_xref="CDD:215639"
misc_feature order(372..374,378..380,399..404,429..431,444..446,
498..500,552..557,579..581,636..638,657..659,777..782,
1194..1196,1248..1250)
/gene="LOC111076908"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99733"
misc_feature order(441..443,501..503,531..533,642..647,726..728,
891..893,966..968,975..977,1050..1055,1071..1073,
1485..1487)
/gene="LOC111076908"
/note="glycine-pyridoxal phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99733"
misc_feature order(441..443,726..728,1053..1055,1485..1487)
/gene="LOC111076908"
/note="active site"
/db_xref="CDD:99733"
misc_feature order(507..509,528..530,711..713,723..725,729..731,
1170..1172,1440..1442)
/gene="LOC111076908"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:99733"
ORIGIN
1 cgccacaaca gccgccatat cagcgcgaca acattgctcc gctgacggct tctttgccgc
61 tagttcagat tcgaacgcca gtcgctgcag aggggaagag acacactaat agtatgcagc
121 gcataagcct ccaactgcca agaaagctcg cgccagtcct tagcagagac ttgaacacca
181 aaacggttaa gtttttccag cgccagcagc cggtccgagc agctttaacg aagaagttac
241 cgacagcgcc gctaacgcca tcgccagcgc tgccattcgc gatcagacga tattcggaag
301 gcaggaacaa cacaactttg agcttgaaaa tggaggatca aaaattgctg caggcaacgc
361 tggaggatag cgatccggag ctggcgaatc tcatcaagaa ggagaaggag cgacagcgcg
421 agggactcga gatgattgcc agcgagaatt tcacctcggt ggccgtactg gagagtcttg
481 gctcctgcct gaccaacaag tactcggagg gctatcccgg caagcgatac tatggcggca
541 acgagttcat tgactgcatc gaactgctgg cccagaagcg cggccgtgag ctcttcaatc
601 tggccgacga tcagtggggc gtgaatgttc agccgtattc gggctcgccc gccaatctcg
661 ccgcctatgt gggcgtctgt cgtccgcacg atcgcatcat gggcctggac ctgcccgatg
721 gcggccatct aacgcacggc ttcttcacgg ccaccaaacg catctcggcc acctcgatct
781 tcttcgagag catgccgtac aaggtgaacc ccgcgacggg catcatcgac tatgacaagc
841 tggccgaggc ggccaaggcc ttcaagccac agattatcat cgctggcatc tcgtgctact
901 cccgcctgct cgactacgcc cgtttccgtc agatctgcga cgatgtgggc gcctatctaa
961 tggccgatat ggcccatgtg gccggtctgg tggccgccgg gcatatacca tcgccgttcg
1021 tgtacgccga cattgtgacc acaaccacgc acaagacgct gcgcggccca cgcgccggcg
1081 tcatcttctt ccgcaagggt gtgcgcagca taaagcccaa cggggaaaag gtgctgtacg
1141 atctggagga gcgcatcaat caggccgtgt tcccatcgct gcagggcgga ccacacaaca
1201 atgccgtggc tggcattgcc accgccttca agcaggccaa gtctgccgaa ttcaagagct
1261 accaatcaca ggtgctgaag aacgccaagg tgctgtgcga gggcctaatg gccaagggct
1321 atcaggtggc caccggcggc actgatgtgc atctcgttct ggtggatgtc cgcaagaacg
1381 gcctcaccgg cgccaaggcg gagctaattc tcgaagaggt tggcattgcc tgcaacaaga
1441 acaccgtgcc cggggacaag tccgccctga atccgtccgg catccgtttg ggcacaccgg
1501 cactgaccac gcgcggcctt gtggcgaagg acatggatca ggtggtggac ttcatagatg
1561 cggctctcaa ggttggcgcc gaggccgtcc aggctgcggg cagccccaag atggttgact
1621 atcacaaggt cctcgctgag gatgcaacga tcaaggccaa gatcgagcag atccacaagg
1681 ctgtgatcgc gttcagcaag cagttcccac tgcccggcct caagactttg taaaacgcaa
1741 aagcatttgt atattttttt gttcgcattg tttcaccaaa cgtaatgcaa aattgtaatc
1801 ctttgcaata attcccgatc gtcaaataca aatggaaata gtagttaagt tattaaacac
1861 acagaaacat caattgaa