PREDICTED: Drosophila obscura broad-complex core protein isoforms
LOCUS XM_022370958 2278 bp mRNA linear INV 14-MAY-2021
1/2/3/4/5 (LOC111076907), transcript variant X2, mRNA.
ACCESSION XM_022370958
VERSION XM_022370958.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022370958.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2278
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..2278
/gene="LOC111076907"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 6 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111076907"
CDS 514..2043
/gene="LOC111076907"
/codon_start=1
/product="protein bric-a-brac 1 isoform X2"
/protein_id="XP_022226650.1"
/db_xref="GeneID:111076907"
/translation="MATTQQYSLRWNNYLRHLTYSLDNHRLNDDFVDVTLCVDGRKIK
AHKVVLSSCSSYFKEIFKENPHPHPVIIFKFIKFEDLNSIIEFMYQGEVNVQQEALQS
FLQTAELLAVQGLTAEEKEKPQLPTLPLSDHKLIKTIPSTIRAVNDQQQQHLPQQQVP
SVAQAQTATQTIEIPTATLLQATAASQVQTQVAAAAAVAAQLQVQQQQQAQSQPQQQQ
HHHVQTNHIQHIQVQSAPLPQQQQQQQQSQQQQQQQQQQQQSQPLPTTPQHLTITNAV
ALSVAKKRKLTFSDDDDNIYATETVAYAGKDDQTIVKTSDMTFLRSAVKMDIPDYIVS
EVDDRLSDGATPQTSQDATTGAAQTVAQYSSEYEILTESEIEEKYQADAENAEIAIEM
TRLLGSGTGATSTPHAVLEDGSPSAVPSTTVSLTPVKADSKGNNAPPNDSPNNKWTEC
QFCKMVITTVNLWRHIRTQHTPQPPRKCDLCNKNFKNKYSLREHIRISHEQKVTIKTE
N"
misc_feature 604..855
/gene="LOC111076907"
/note="BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ
(poxvirus and zinc finger) domain found in Drosophila
melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2
(BAB2), modifier of mdg4 (doom), and similar proteins;
Region: BTB_POZ_BAB-like; cd18315"
/db_xref="CDD:349624"
misc_feature 1861..1923
/gene="LOC111076907"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1942..2004
/gene="LOC111076907"
/note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096"
/db_xref="CDD:395048"
misc_feature 1945..2004
/gene="LOC111076907"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
1 atcaaaaaaa caaaatggtg gcatataata tttttgtttg gccgcgtaca taaaaaaaat
61 ttcgtgtata atttggccat aaacactaac aaaagtgagc aaacaatcaa aaacgtgcga
121 gagagacagc ggtgaagcga gcacggcgat agaaacaata aaattacacg aaatcaggca
181 gcaattaaca cagttgatca tcgaacgctg gtttgccgaa gggtagcgta gcggcctggc
241 tgcctgcctg gtgtttggtg ttggtaaacc tcttggtggg tcgattgcgc tggtccagag
301 gtgccacccg ggccacccag cggtggttgg gcaacggcat tctactaggg tggtggcagt
361 acagtacagg tagctgcagt ccgcccccag tatctcctcg caccagctgg aagaggcgat
421 accaaaacaa caacaacaac agcaaacgag caacctgcaa actgccaact gcattgccgg
481 ttaattggat tagtcagtcc gtaggtagtg gagatggcca cgacacagca gtactcgctg
541 cggtggaaca actatctgcg ccacctgacc tactcactgg acaaccaccg gctgaacgat
601 gattttgtcg atgtcacatt atgcgtggac ggcagaaaga ttaaggccca caaggtggta
661 ctgtcctcgt gctcatcata ctttaaggag atattcaagg agaatcccca tccgcatcca
721 gtcattatat ttaagtttat caaattcgaa gatctcaact cgataatcga gttcatgtac
781 cagggcgagg tgaatgtaca gcaggaggcg ttgcaatcgt tcctgcaaac agccgagctg
841 cttgccgtcc agggcctcac cgccgaggag aaggagaagc cgcagctgcc aacattgccg
901 ctcagcgatc ataagctcat caagaccata cccagcacca taagagcggt gaacgatcag
961 caacaacagc accttccaca gcagcaggtg cccagcgtgg cacaggcgca gacagcaacg
1021 caaaccatcg aaatacccac ggccacgcta ttgcaggcaa cggctgccag tcaggttcag
1081 acgcaagtgg ctgctgccgc tgccgttgcc gctcagcttc aggtccagca gcagcagcag
1141 gcgcagtctc agccgcagca acagcagcat catcatgtac aaaccaatca tatacaacac
1201 atccaggtgc aatcggcacc actaccacag caacagcagc agcagcagca atcccaacag
1261 cagcagcaac aacagcaaca gcagcagcaa tcacagccac tgccgacaac gccacagcat
1321 ttgaccatca cgaatgcggt ggccctgtcc gtggcgaaga agcgtaagct caccttctcc
1381 gatgatgatg acaacatcta cgccaccgaa acggtcgcct atgccggcaa ggatgaccag
1441 actattgtga aaacttctga tatgaccttc ctaagaagtg ccgtcaaaat ggatataccc
1501 gactatattg tgagcgaggt ggatgatcgg ctgtcggacg gtgccacgcc gcagacgtca
1561 caggatgcca ctaccggggc agcgcagacg gtggcccaat actcatccga atatgagata
1621 ctgaccgagt cagagatcga ggagaaatat caagcggatg cggaaaatgc cgagatagcc
1681 atcgaaatga cccgcctgtt gggcagtggg acgggggcaa catccacgcc ccatgctgtg
1741 ttagaggatg gcagcccgtc ggcagttccc tcgactacgg tgtccctgac gccggtcaag
1801 gcggacagca agggcaacaa cgcgccgcca aatgattcgc ccaataataa gtggacagaa
1861 tgtcagtttt gcaaaatggt tattaccacg gttaatcttt ggagacatat tcgcacccaa
1921 cacacaccac aaccgccccg caaatgtgat ctctgcaata agaatttcaa aaataaatac
1981 agcctccgcg agcacatacg catctcgcac gaacagaagg tcaccatcaa aacggagaac
2041 tgatgggcaa tctacacgac tgccgaaacc ttcatcagcc tcaatatgaa tatgggcagc
2101 atacgaaact aaatggaaca caaaacaaga gagagacaca cacagagaga gagagagaga
2161 gattccaaga tatatatata aaatactata tagagaataa cgtccaagta gcaataacaa
2221 ctgaaagatt actctttcca gtccacacac aagaaaaaaa aaaaaaagag tccaccaa