PREDICTED: Drosophila obscura uncharacterized LOC111076892
LOCUS XM_022370931 1830 bp mRNA linear INV 14-MAY-2021
(LOC111076892), mRNA.
ACCESSION XM_022370931
VERSION XM_022370931.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq; corrected model.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022370931.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
frameshifts :: corrected 1 indel
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-183 JAECWW010000165.1 861818-862000
184-561 JAECWW010000165.1 862086-862463
562-721 JAECWW010000165.1 862557-862716
722-816 JAECWW010000165.1 862787-862881
817-1830 JAECWW010000165.1 862883-863896
FEATURES Location/Qualifiers
source 1..1830
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1830
/gene="LOC111076892"
/note="The sequence of the model RefSeq transcript was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 1 base in 1 codon;
Derived by automated computational analysis using gene
prediction method: Gnomon. Supporting evidence includes
similarity to: 3 Proteins, and 99% coverage of the
annotated genomic feature by RNAseq alignments, including
17 samples with support for all annotated introns"
/db_xref="GeneID:111076892"
CDS 10..1440
/gene="LOC111076892"
/note="The sequence of the model RefSeq protein was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 1 base in 1 codon"
/codon_start=1
/product="LOW QUALITY PROTEIN: uncharacterized protein
LOC111076892"
/protein_id="XP_022226623.2"
/db_xref="GeneID:111076892"
/translation="MRNIRNLKDPTTTTTTTTWGILLLMLLWLVAPGHTELPKVICRD
HDTTITCDCNNEEQAMVLPQLHGAVFQVEVRNCRDLVVEAYALSNTEGLRKISFRQLG
QLVLREYALTVPRYASNKALIVEFEAVNLRLIESHAINGNIEEISFVGGRIEQMQPFG
FTTTKNSAILLKLDGVTIQRIEGQAFKKFAVEQLTIANCQFLGDLPTRSFYELEVLHE
LSMRNNRFQVVHSHAFSFKLVSKLSLSDNHFVAVDGEWLEAQIRDAVTLRVNDFGATS
EIAFRSLTVHRSYQLSERLELRFHNNTLRSARPGSGLDSSTAGQQDVAAAAAQPLRFD
ERFALSLREVRYVNAWSCYQLDTSVEPPLPRSDFFRLHSEQLLFPRPNANGAKAQQQQ
QQQFVPLRQLIAEQCQTTSYVAYIVTGSVLLGLLLLLLLLLLWWRLAQRRKRRKLDVV
QPEPRTYKETQIVYQIENAGLLKTDL"
misc_feature 580..654
/gene="LOC111076892"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275378"
misc_feature 601..756
/gene="LOC111076892"
/note="Leucine rich repeat; Region: LRR_8; pfam13855"
/db_xref="CDD:404697"
misc_feature 655..729
/gene="LOC111076892"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275378"
ORIGIN
1 gtaaaaacca tgcgaaatat cagaaatctc aaggatccca ccaccaccac caccaccacc
61 acctggggca tcctgctgtt aatgctgctg tggctggtgg cgcccggaca tacggaattg
121 cccaaagtca tttgtcgcga tcatgacacc accatcacct gtgactgcaa caacgaggag
181 caggccatgg tcctgcccca gctgcatggt gccgtctttc aggtggaggt gcgcaactgt
241 cgcgatcttg tggtggaggc ctatgctctc agcaataccg agggtctgcg caagatctcg
301 ttccggcagc tgggccaatt ggtgctgcgg gagtacgcat tgactgtgcc gcgctacgcc
361 agcaacaagg ctctgattgt cgaattcgag gcggtcaatc tgcggttgat cgagtcgcat
421 gccatcaacg ggaacatcga ggagatctca tttgtgggcg gacgcatcga acagatgcaa
481 ccgtttggtt ttaccaccac caaaaacagt gccatattgc tgaagcttga tggtgtcacc
541 attcagcgga ttgaggggca ggcctttaag aagtttgccg tggagcagct aacaatcgcc
601 aattgccagt tcctgggtga tctgcccaca cgctccttct acgagctgga agtgctccat
661 gagctgagca tgcgcaacaa tcgcttccag gtggtgcatt cgcatgcctt ctcctttaag
721 cttgtctcca agctgagcct cagcgacaat cattttgtgg ctgtggacgg cgagtggctg
781 gaggcgcaga tacgggacgc tgtcacgctg cgggtgaatg attttggggc caccagtgag
841 atagccttcc gcagcctgac cgtccatcgg agctatcagc tcagtgagcg gctggagttg
901 cgcttccaca acaataccct gcgcagtgcc cgccctggat ccgggttgga ttcctcaacg
961 gccggacagc aggatgtcgc agcagcagct gcccagccac tgcgctttga cgagcgcttt
1021 gcactgagtc tgcgtgaggt gcgctacgtg aatgcctgga gctgttacca gctggacaca
1081 agcgtggagc cgccactgcc gcgctccgac ttctttcgcc tgcacagcga gcagctgctg
1141 ttcccgcgtc ccaacgcaaa tggagcgaag gcgcagcagc agcaacagca gcagtttgtg
1201 ccgctccgtc agctgatagc cgagcagtgc caaacgacca gctatgtggc gtacattgtg
1261 acgggcagtg tgctgctggg gctgctgttg ctgctccttt tgctgctgtt gtggtggcgt
1321 ctggcccaga ggcgtaagcg acgcaaactg gacgtggtgc agccggagcc gcgcacctac
1381 aaagagacac agatcgtata ccaaatcgag aatgctggcc tgctgaagac tgatttgtag
1441 acacacacac acacaccaca aagacacaca cacacagaca tcaaaggaca tgtagagaca
1501 ggacgcacaa acaaacaaac acagagctga agagaagcta gagaagcggg tagcgagcgc
1561 acactgaacc accaatccac caatgagtga ccttttgttg taccaaaacc atagcctaaa
1621 acttagctct aaatatctac cacataatta ttaaacctac atatactatt acctatatac
1681 tatgtacgta ttatgtccgt gtatatccag caacataata tttgtcaatt gtaagtcgcc
1741 ctgtaaatag ttattatagc aagggggatg cgattccaca tccaaccata catatgcgaa
1801 gtctattgaa taaatcgagc atcaaacgct