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LOCUS XM_022367788 3762 bp mRNA linear INV 14-MAY-2021 16 (LOC111074830), mRNA. ACCESSION XM_022367788 VERSION XM_022367788.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; includes ab initio. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022367788.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3762 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3762 /gene="LOC111074830" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111074830" CDS 22..3600 /gene="LOC111074830" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase 16" /protein_id="XP_022223480.2" /db_xref="GeneID:111074830" /translation="MEATANGNIRKKRAKKGARAKQLLAMGKKRQMDNHDNASSTDSG QEDSHGQTAGASGSASAAGAGSLGADSPMTNCCQHIKKSVDAARLRRQLKTTGLVYEC SQCQKISQSAASGSGSGVDLACDFEIDSTLWLCLKCGTQLCGRSRKQHALQHYKTPHS DSHALAMNTRSFEIWCYGCDNKVIPNSRKNLLECVELVKRLAQKPPADPPVEATVVAA PSPPIITDIELKLKSALNRLKPIVPMTGGSFEDNNSTGRSGGKALTSNLTAIPLPSPP GATASSPVPGMAKRIDSAAVGSNPNRPCSPRSELERLPRVRGLTNLGNTCFFNAVMQC LAQTPFLLRVLRELAEPGEEFELPGGTFDFKDKGPTDLPIIRGTLSSWGGLTSALANA LEELQVGGGVFTPSKLFDRLCAKCPQFTGGDQHDAHELLRQLLESVRNEDLKRYQRVI LQNLGYKDEDIQSVSEEMRQKCKIYGNQAGDRILRPEQVFRGFLVSTLTCQDCHSVSS RHEYFLDMSLPVAVEKPQPPQRRRPSPESSPFPIAGQTQTQTQNQSQSQSPTKINTKF TTPEDSNPFSTACSSSSSFYLHANEQEPVGPSKSQVKKEKERERKAKRAAKHHRYKQA QKLTLNLNGNGTGSQADESDAGTGRVTSSGGGDGDGQTTSDGQDPPKEDLMSSSSTTS ENSDADVEDNLMDETASARDRTKPRGATGGSSSSPAQGGSNSSSSRRFFTDTNGNAQP LGEKRDDTPENMDKDSLEEDENDSGIATSPLPSGISKTTTTTTANNNEASRGAEQQQP QKDKKEEGQASADIVTAGVSEVGASTIRQISVELDLPTNGDVREEAGEANGDADANAT LQLQEIAHQLAISEFTLEATAATAASATAEGVAAAAAAAGVAAAARAKRVRTYSYSDW STTIAPRYQCEDGECSVQSCLNNFTAVELMTGQNKVGCESCTLRLNGNDTKAKSVNTN ATKQLLVSSPPAVLILHLKRFQLGPRCIFRKLTRPVSYPNMLDIAAFCGSKVKNLPNI DRKQKKLLYALYGVVEHSGGMYGGHYTAYVKVRPKVTPEDNRWKFLPHGSKAELDQDD EQLKKLEELLAKEKASRLLHLNSMNDSDDFTNSSSNSSTSDEFNTNPNGGTGQDGHHE QQEEEAANVQAPPGKWYYVSDSRVQEVSEDAALKAQAYLLFYERIY" misc_feature 391..582 /gene="LOC111074830" /note="Zn-finger in ubiquitin-hydrolases and other protein; Region: zf-UBP; pfam02148" /db_xref="CDD:460464" misc_feature 973..>1590 /gene="LOC111074830" /note="Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553" /db_xref="CDD:470612" misc_feature <2779..3588 /gene="LOC111074830" /note="A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl...; Region: Peptidase_C19K; cd02667" /db_xref="CDD:239132" ORIGIN 1 agaaagtcaa cgacaaaggg aatggaagcg acagccaatg gaaacattag aaaaaagcgc 61 gccaaaaagg gggctagagc gaagcagttg ctcgccatgg ggaagaagcg tcagatggac 121 aaccacgaca atgccagttc aacggactcg ggccaggagg atagccacgg ccagacggcc 181 ggtgccagcg gctcagcaag cgctgcagga gctggcagct tgggtgcgga tagccccatg 241 accaactgct gccagcacat caagaaatcg gttgatgcgg cccggttgcg gcgtcaactg 301 aaaaccaccg gcctggtata cgagtgctcg cagtgccaga agatcagcca gtccgctgca 361 tccggttcag gctccggcgt agatctggcc tgcgacttcg agatcgacag cacgctctgg 421 ctgtgcctca agtgcggcac ccagctctgc gggcggtcac gcaagcagca cgccctccag 481 cactacaaga caccacactc ggactcgcat gcactggcca tgaacacacg atcatttgag 541 atatggtgct atggctgcga caacaaggtc atccccaact cccgcaagaa cttgctcgag 601 tgcgtcgagc tggtgaagcg tctggcccag aagccgcccg ccgatccacc tgtggaggcc 661 actgtcgtgg ccgctcccag tccacccatc atcaccgaca tcgaactgaa attgaaatcg 721 gccctaaatc ggctcaaacc cattgtgccc atgacgggtg gctcgttcga ggacaacaac 781 agcaccggca gaagcggtgg gaaggccctg acaagtaacc taacagccat acccctgccg 841 tcacccccag gagccaccgc cagcagccct gttccgggca tggccaagag gatcgactcc 901 gccgccgtcg gcagcaatcc gaatcgcccg tgctcaccca ggagcgaact ggagcgacta 961 ccgcgtgtcc gtggactgac caatttgggc aacacttgct tcttcaatgc tgttatgcag 1021 tgcctcgccc agaccccgtt cctgctccgt gttctccggg agctggcgga accaggagaa 1081 gaatttgagc tgcccggagg gacgttcgat ttcaaagaca agggccccac cgacttgccg 1141 atcatccggg gcaccctctc ctcctggggc ggcctcacct cggcgctggc caacgcgctc 1201 gaggagctgc aggtgggtgg tggcgtcttc acacccagca agctctttga caggctgtgc 1261 gcgaagtgtc cgcagttcac gggcggggac cagcacgacg cccacgagct gctgcggcag 1321 ctgttggaga gcgtgcgaaa cgaggatctc aagcgctatc agcgcgtcat cctgcagaac 1381 ctcggctaca aggacgagga catacaaagc gtgtcggagg agatgcggca gaagtgcaag 1441 atctatggca accaggccgg cgaccgcatc ctgcgaccag agcaggtctt ccgcggattt 1501 ctcgtctcga cgctgacctg ccaggactgc cacagtgtct cgtcgcggca cgaatacttc 1561 ctggacatgt ccctgccggt ggccgtcgag aagccccagc caccacagcg gcgcaggccc 1621 agccccgaga gctcgccctt tcccatcgcc ggccagacac agacacaaac acagaaccag 1681 tcgcagtcgc aatcccccac caagataaac accaagttca cgacgcccga ggatagcaac 1741 ccgttctcga cggcttgttc ctcctcctcc tcgttctacc tgcacgcaaa cgagcaggag 1801 cccgtcggtc cgtccaagtc gcaggtgaag aaggagaagg agcgcgagcg caaagcgaag 1861 cgggcggcca agcaccatcg ctacaagcag gcacagaagc tcaccctcaa cctgaacgga 1921 aacggaacgg gaagccaggc cgatgagtcg gatgccggca cagggagagt gacatcgtcc 1981 gggggcggcg acggcgatgg ccagacgacc agcgatggcc aggatccgcc caaggaggat 2041 ttaatgtcat cgagctccac cacatcggag aactcggacg ccgatgttga ggacaatttg 2101 atggatgaaa cggcaagtgc cagggacagg actaagcccc gaggggccac cggcggctcc 2161 tcatcctcac ccgctcaggg aggcagcaac agcagcagca gcagaagatt cttcaccgac 2221 accaatggca atgcccagcc gctgggggag aagcgggacg acacgcccga gaacatggac 2281 aaggactccc tcgaagagga tgagaacgac tctggcatag ccaccagtcc gttgcccagc 2341 ggcatcagta aaacaacgac gaccaccacc gccaacaaca acgaggcttc cagaggtgca 2401 gagcagcaac agccacagaa ggataagaag gaggagggcc aagcctctgc ggacatagtc 2461 acagcgggcg tgagcgaggt gggtgcctcc accatacgcc aaatctcggt tgaattggat 2521 ctgccaacga atggagacgt ccgagaggag gcgggtgagg cgaatgggga tgcggatgcg 2581 aatgctacgc tccagctgca ggagatagcc caccagctgg ctataagtga attcaccttg 2641 gaggccacag cggcaactgc agcttcggcc acagccgagg gggtggcagc agcagccgcg 2701 gcggcaggag tcgcggcagc agcacgcgcc aagcgtgtgc gaacgtacag ctattcggac 2761 tggagcacca cgatagcgcc gcggtaccag tgcgaggacg gagagtgctc cgtgcagtcc 2821 tgcctcaaca acttcaccgc cgtcgaactg atgaccggcc agaacaaggt ggggtgcgag 2881 agctgcaccc tgcggctgaa tggtaacgat acgaaggcca agtcggtcaa tacgaatgcc 2941 accaagcagc tgctcgtgtc cagccctccg gcggtgctca ttctccacct gaaacgcttc 3001 cagcttgggc cgcgctgcat attcaggaag ctaacgcggc cggtcagcta tccaaacatg 3061 ctggacattg ccgccttctg cggatccaag gtgaagaatc tgcccaatat cgatcgcaag 3121 cagaagaagc ttctgtacgc cctctacggg gtggtggagc actcgggcgg catgtatggc 3181 ggccactata ccgcctacgt taaggtgcgg cccaaggtga cgccggagga caatcgctgg 3241 aagttcctgc cgcacggcag caaggccgag ctcgatcagg atgacgagca gctgaagaag 3301 ctggaggagc tgctggccaa ggagaaggcc tcgcgccttc tgcacttgaa ctcgatgaac 3361 gacagcgacg acttcaccaa ctccagcagc aattcatcta cctcggacga gttcaatacc 3421 aatcccaatg gcggtaccgg ccaggatggc catcacgagc agcaggagga ggaggctgcc 3481 aatgtgcagg cgccgccagg gaaatggtac tacgtatccg attcgcgggt ccaggaggtt 3541 agcgaggacg cggcgctcaa ggcccaggcc tatctgctct tctacgagcg catctactaa 3601 gggggaggag actggaaatg ggactagaac tagcccaagg gacaacgaga actactacta 3661 ggcactatgg acgggggaaa gcaacaagag aagagaaaag agaagaaaag aaaagagaga 3721 gaaagaggag cagcagccat cgttccatta tatagcttac ga