PREDICTED: Drosophila obscura nuclear pore complex protein
LOCUS XM_022367780 1440 bp mRNA linear INV 14-MAY-2021
Nup98-Nup96-like (LOC111074822), mRNA.
ACCESSION XM_022367780
VERSION XM_022367780.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022367780.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1440
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1440
/gene="LOC111074822"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 100% coverage of the annotated
genomic feature by RNAseq alignments, including 7 samples
with support for all annotated introns"
/db_xref="GeneID:111074822"
CDS 698..1423
/gene="LOC111074822"
/codon_start=1
/product="nuclear pore complex protein Nup98-Nup96-like"
/protein_id="XP_022223472.2"
/db_xref="GeneID:111074822"
/translation="MTLGDARYLEANMRRVFPLEQEEKWCDRFYTWFTNRKTREKKKD
KAADIPNSKSSVNSNGPHRLQAALGRPHQKSDSPTETASSSSSSGFSSRDSRDQHLQD
TDKSQASAIAKRDTFASQQQQQAALSQETVVNRSRLAIEAAARRYGASDYAPHPTGIV
LRRVGYYTIPSLDDLKSYLAEDGSCVVPNFTIGREGYGTVFFAMEMDVAGLNLDEIVY
FTSVTRGSSFILTMRRGRLSTKA"
misc_feature 1184..>1345
/gene="LOC111074822"
/note="Nucleoporin autopeptidase; Region: Nucleoporin2;
pfam04096"
/db_xref="CDD:461171"
ORIGIN
1 tacagaaact acgtaacgta acgttaactt agttagtaag tatctagtaa cagtagttac
61 cttacctgca gttaagtgga gcaacagacc gacatattag catagttacg tgtgtgtatg
121 tgtgtgtgcg ttcgcggacg cgcgccaatt cggcttaaac tctctcactt aaactcgctt
181 aaacgcctaa actaactacg caccatgtag tatctacgta ccgttaactt agttagtaac
241 gatatagtac cagtaaatac cttacctgta gcaacagccg gcatcccatt ttgagcatat
301 acctgtgtgt gtgtagacgc gacgcaccaa cagctgtaat aatgagtaaa aggagatacg
361 ttaagtcttg gttggatgac caggccgccg ccacaggtaa cgaccatgtt gaccatgacc
421 atgattacgt tccggtgcca gtcaccgaat gtaagtagcg acgacgactt cgatgtgacg
481 tcgagcagtg gagattcgga tgagtccgac cacatttcgc aacaggacgc cgcatcatgc
541 ccctccacag tgactacggt tacatgccgt acatcctcct aaacagtgga aatgcgggcc
601 aggagctgct aaaaaagaag cgcaaaaacg taaagcgacg caacagagga agctcgtaac
661 gcttgtggga gagtactttg tacataataa cattcacatg acgctgggag acgccagata
721 tttagaagcc aacatgcgaa gggtttttcc gctggagcaa gaggaaaagt ggtgtgatag
781 gttctatacc tggttcacca acaggaaaac aagagagaaa aaaaaggaca aggccgccga
841 tatcccaaac tccaaatctt cggtgaacag caacggtccc cacaggctcc aagcggcttt
901 gggacgtccc caccaaaagt ccgacagtcc cacagagacg gcgagcagta gcagcagcag
961 cggtttctct tccagggaca gcagagacca acatctgcag gatacggata agtcgcaagc
1021 cagcgccatt gccaagcggg ataccttcgc atcgcagcag cagcagcagg cggccctctc
1081 gcaggagact gtagtgaatc gctccagact ggccatcgag gcagcagcga ggcgctatgg
1141 ggcgtcagac tatgcgccac atcccacagg gatagtgttg cgacgcgtgg gctactacac
1201 gataccctcg ctggatgatc tcaagtccta cctggccgag gatgggtcct gtgtggtgcc
1261 caatttcacc attggacgcg agggctatgg cactgtgttc tttgccatgg aaatggacgt
1321 ggccggactg aatctggatg agattgttta ctttacttcc gtaacaaggg gatcatcatt
1381 tatcctgacg atgagaagag gccgcctctc aaccaaggcc tgaatcgtga ggcacaagtc