PREDICTED: Drosophila obscura box C/D snoRNA protein 1
LOCUS XM_022367776 1759 bp mRNA linear INV 14-MAY-2021
(LOC111074818), mRNA.
ACCESSION XM_022367776
VERSION XM_022367776.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022367776.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1759
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1759
/gene="LOC111074818"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 3 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111074818"
CDS 229..1266
/gene="LOC111074818"
/codon_start=1
/product="box C/D snoRNA protein 1"
/protein_id="XP_022223468.2"
/db_xref="GeneID:111074818"
/translation="MSEKADTSVRSLRLGVCEVCGGKEAHYACPKCEVKTCSVACVQI
HKRELVCDGVRDRTKFVPLSEMTARELMSDYCFLEQCTRYADDRKCDQAKRYTQQQRY
LPVPQHRMRAAAQKRNIQLSLLLPHFSRHKENTTFLDWKQNRFYWRIDWLFVNAAEEE
EEDDQIKSARFVDARCDEELTLSALLVKYVDLQQETARENRKLLVRHQTVGIGGLSFW
LQAEGVRRSAIRCYHLEANQTLRENLSGKTIVEFPTIFVTYTRDPPAGYETIDSDKES
DDDHTGTASDPESEEERTSANTPKKAKILQDFDGIHDVYHALAAAYSDEDGSDTDDCK
VEGMFREDIEL"
misc_feature 271..390
/gene="LOC111074818"
/note="zinc finger HIT (zf-HIT) found in Box C/D snoRNA
protein 1 (BCD1) and similar proteins; Region:
zf-HIT_BCD1; cd23023"
/db_xref="CDD:467795"
misc_feature order(277..279,286..288,313..315,322..324,337..339,
349..351,361..363,379..381)
/gene="LOC111074818"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:467795"
ORIGIN
1 aggcctatcc actcaccagt ttcgaatttc aatatgtttg tttgatttca atagacacca
61 acgcgctgga accgaacaag attaacatat tgcgcgcagt ttataaacaa gcaaacagca
121 acgcgacgta atgatactca cacttgagca ccaacagctg ttcgcaaaga aaaacaagat
181 ggagaggaac accacgtgcg cgctattctt caaacatacg cccatgaaat gtcggaaaag
241 gcagacactt cggttaggag cctgcgtctg ggcgtttgcg aggtttgtgg cggaaaggaa
301 gcccactatg cctgccccaa atgcgaggtg aagacttgca gcgtggcctg cgtccagata
361 cacaagaggg agcttgtctg tgatggcgtg cgggatcgca ccaagttcgt gccgcttagc
421 gagatgacgg cccgggaact gatgagcgat tactgcttct tggagcagtg cacacggtac
481 gcggacgacc gcaagtgcga ccaggcgaag cgctacaccc agcagcagcg atatctgcca
541 gtgccgcagc atcgcatgcg cgcggcggcc cagaagcgga acattcagct ctccctgctg
601 ctgccgcact tcagtcggca caaggagaac accacctttc tggactggaa gcaaaatcgc
661 ttctattggc gcatcgattg gctgtttgtg aatgctgccg aggaagagga ggaagatgac
721 cagatcaagt ctgcccgttt tgtggatgct cgctgtgatg aggagctgac tttgtccgct
781 ctgcttgtta agtatgtgga cctgcagcag gagacggccc gcgagaatcg caaactcctc
841 gtccgccatc agacggtggg cattggtggc ctgagctttt ggctgcaggc cgagggcgtc
901 cggcgcagcg ccattcgttg ctatcacctg gaggcaaacc aaacgcttcg cgagaatctc
961 tctggcaaga cgattgtgga gttccccacc atctttgtca cctatacgcg ggatcctccg
1021 gccggctacg agacaataga cagtgataag gaatcggatg atgatcacac aggaaccgca
1081 tctgatcccg aatcggaaga ggagcgaacg tctgcgaaca caccgaaaaa ggcaaagata
1141 ctgcaagatt ttgatgggat ccacgatgtc taccatgcat tggctgctgc ctattccgac
1201 gaggacggca gtgacacaga tgactgtaaa gtcgaaggaa tgtttcgtga agacattgag
1261 ctgtagatca aggaacaggg acaaaagaga aaagccgaag cgaaagcgac agagtctgag
1321 atgctttggt agtctctgac cgactagctt gtggcgaagc cgatgggaag gagactgtag
1381 ggaagatcaa gagcctgatc ccaaaaatca tctctgttga acgagaagga tcctgtgtac
1441 cataatctag tacctgaata ctagcgaaga agaagcgtta aaagcagcaa aagcatatat
1501 aaaacagatg ccttatgtcc tacttctggc cattatggca atggaatcag ctacccaata
1561 tacatacatg atagataaag cagatgcctt atgtcctacc tctggccatt atggcagtga
1621 aaacggcttc caatacacga cattggaaaa taaactaaac atcgtgaata aaacacgagt
1681 cttgtgtctt accactacct ctggccagta tatggccatg gaatcagcta gcaatacata
1741 catacccatc ttccatatg