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LOCUS XM_022367753 2108 bp mRNA linear INV 14-MAY-2021 protein 4 (LOC111074802), transcript variant X2, mRNA. ACCESSION XM_022367753 VERSION XM_022367753.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022367753.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2108 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..2108 /gene="LOC111074802" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111074802" CDS 171..1496 /gene="LOC111074802" /codon_start=1 /product="vacuolar protein sorting-associated protein 4" /protein_id="XP_022223445.1" /db_xref="GeneID:111074802" /translation="MASGTTLQKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTI KYEAQGEKAKDSIRAKCLQYLDRAEKLKEYLKKGKKKPIKEGDESNSKDDKDKKSDSD DEDDDPEKKKLQAKLEGAIVIEKPQVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGK RIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFE LARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLVQMQGVGNDTDGILVLGATN IPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKEMAGKTEGYS GADISIVVRDALMEPVRKVQTATHFKKVTGPSPSNKDETVDDLLIPCSPGDAGAVEMN WMDVPSDKLFEPAVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQEG" misc_feature 186..377 /gene="LOC111074802" /note="MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear; Region: MIT_VPS4; cd02678" /db_xref="CDD:239141" misc_feature 543..1055 /gene="LOC111074802" /note="ATPase domain of vacuolar protein sorting-associated protein 4; Region: RecA-like_VPS4; cd19521" /db_xref="CDD:410929" misc_feature order(546..548,603..605,615..617,624..629,639..641, 651..653,687..692,702..704,714..716,747..749,753..755, 759..767,774..776,798..800,861..866,873..875,888..890, 894..896,900..908,912..920,927..932,999..1001,1008..1010) /gene="LOC111074802" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:410929" misc_feature order(564..572,576..578,687..707,861..863,996..998) /gene="LOC111074802" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:410929" misc_feature 1134..1253 /gene="LOC111074802" /note="AAA+ lid domain; Region: AAA_lid_3; pfam17862" /db_xref="CDD:465537" misc_feature 1302..1484 /gene="LOC111074802" /note="Vps4 C terminal oligomerization domain; Region: Vps4_C; pfam09336" /db_xref="CDD:462762" ORIGIN 1 aaataaaaaa ataaaaaaaa caacaaaaca agacggagac gtcgtcattc gcagtttcta 61 tttctgttcc actcccagcc gcatccaaca gcccccaagc gtacgaccca ctgcatcctg 121 tgcgcggcaa gagtttagtt tttgggattt ggagccagac agcgtaaatc atggcatccg 181 gcaccacact acagaaggcc atcgacctgg tgaccaaggc caccgaggag gatcgcaaca 241 agaactatgc cgaggcactg cgcctctatg agcacggagt ggagtacttt ctgcatacga 301 ttaaatacga ggcgcagggc gagaaggcca aggactcgat cagagccaag tgcttgcagt 361 atttggatcg ggccgagaag ctcaaggagt acctgaagaa gggcaagaag aaaccgataa 421 aggagggcga cgagtccaat tccaaggacg acaaggacaa gaagagcgac agcgatgacg 481 aggacgacga cccggagaag aagaagctgc aggccaagct ggagggggcg attgtcatcg 541 agaagccgca ggtgcagtgg tccgatgtgg ccggtctgga cgccgccaag gaggccctca 601 aagaggccgt catcttgccc atcaagttcc cacagctgtt caccggcaag cgcataccct 661 ggaagggcat cctgctgttc ggcccacccg gtacgggcaa gtcctacctg gccaaggcag 721 tcgccaccga agccaaccgg tccacattct tctccgtgtc cagctccgat ctgatgtcca 781 aatggctggg cgagtccgag aagctggtca agaatctctt tgagctggcc cgccagcaca 841 agccatcgat catattcatc gacgagatcg attccatgtg ctcggcccgt tccgacaacg 901 agaacgacag tgtgcgtcgc atcaagaccg agttcctggt gcagatgcag ggcgtgggca 961 acgacacgga cggcatcctg gtcctgggcg ccaccaatat accctgggtc ctcgactctg 1021 ccatccggcg acgcttcgag aagcgcatct acattccgct gccggaggcg catgcccgcc 1081 ttgtcatgtt caagatacac ttgggcaaca ccacacacgt cctcaccgaa caggatctca 1141 aggagatggc tggcaaaacc gagggatact ctggtgcgga tatatcgatt gtggtgcgcg 1201 atgcactgat ggagcccgtg cgaaaggtcc aaacggccac gcacttcaag aaggtgacgg 1261 gacccagtcc ctcgaataag gacgagactg tcgatgacct gcttatccca tgctctccag 1321 gtgatgcggg cgccgtcgag atgaactgga tggatgtgcc tagcgacaag ctcttcgaac 1381 cggccgtgac catgcgcgac atgctaaaat cgctgtcgcg cacgaaaccc acagtcaacg 1441 aagatgacct gaagaagctg cgcaaattca cagaggactt tggccaggag ggctagggct 1501 agggctctcc cccagcccat tccccgccag cactccagca ccaccagcta attctaattg 1561 ttgcctattg cataaattca aacacgtttt attcgggctc tccattacct attttctttt 1621 tttttttaca tacatatata tatacgataa ataacatacg cgaacgatat atgtacggtt 1681 aaatgtttaa ttcaaatttc aatacgattg caagagaagg aagaaaagaa agtaaaagag 1741 taagagcaag gagaaaggag caaggagcag agagatggct atcaccagaa gcagcctgat 1801 gttgttgtaa tcacaaagtc aatgtatttt tgtactcgta atgttaagca atagaagaga 1861 tccaacccgt aatacccgta ataccatacc ccatgtacac gacggacgat acgtgtgtcg 1921 gagccaccag acagtgtgtg ttctagcgca atgatgcccg tatatgtagt atatgctagt 1981 aggacagctg cagaagtgat cagcagatga agaacgataa gtagtgagcg aagccaacca 2041 attcaagcaa ccaagcaaac ctaattcaaa tgtaacttat gaaaaataaa cgaaaagtat 2101 atactgta