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LOCUS XM_022367752 2111 bp mRNA linear INV 14-MAY-2021 protein 4 (LOC111074802), transcript variant X1, mRNA. ACCESSION XM_022367752 VERSION XM_022367752.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022367752.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2111 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..2111 /gene="LOC111074802" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111074802" CDS 174..1499 /gene="LOC111074802" /codon_start=1 /product="vacuolar protein sorting-associated protein 4" /protein_id="XP_022223444.1" /db_xref="GeneID:111074802" /translation="MASGTTLQKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTI KYEAQGEKAKDSIRAKCLQYLDRAEKLKEYLKKGKKKPIKEGDESNSKDDKDKKSDSD DEDDDPEKKKLQAKLEGAIVIEKPQVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGK RIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFE LARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLVQMQGVGNDTDGILVLGATN IPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKEMAGKTEGYS GADISIVVRDALMEPVRKVQTATHFKKVTGPSPSNKDETVDDLLIPCSPGDAGAVEMN WMDVPSDKLFEPAVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQEG" misc_feature 189..380 /gene="LOC111074802" /note="MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear; Region: MIT_VPS4; cd02678" /db_xref="CDD:239141" misc_feature 546..1058 /gene="LOC111074802" /note="ATPase domain of vacuolar protein sorting-associated protein 4; Region: RecA-like_VPS4; cd19521" /db_xref="CDD:410929" misc_feature order(549..551,606..608,618..620,627..632,642..644, 654..656,690..695,705..707,717..719,750..752,756..758, 762..770,777..779,801..803,864..869,876..878,891..893, 897..899,903..911,915..923,930..935,1002..1004,1011..1013) /gene="LOC111074802" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:410929" misc_feature order(567..575,579..581,690..710,864..866,999..1001) /gene="LOC111074802" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:410929" misc_feature 1137..1256 /gene="LOC111074802" /note="AAA+ lid domain; Region: AAA_lid_3; pfam17862" /db_xref="CDD:465537" misc_feature 1305..1487 /gene="LOC111074802" /note="Vps4 C terminal oligomerization domain; Region: Vps4_C; pfam09336" /db_xref="CDD:462762" ORIGIN 1 aaataaaaaa ataaaaaaaa caacaaaaca agacggagac gtcgtcattc gcagtttcta 61 tttctgttcc actcccagcc gcatccaaca gcccccaagc gtacgaccca ctgcatcctg 121 tgcgcggcaa gagtttagtt tttgggattt ggagccagac agcgtaaatc agcatggcat 181 ccggcaccac actacagaag gccatcgacc tggtgaccaa ggccaccgag gaggatcgca 241 acaagaacta tgccgaggca ctgcgcctct atgagcacgg agtggagtac tttctgcata 301 cgattaaata cgaggcgcag ggcgagaagg ccaaggactc gatcagagcc aagtgcttgc 361 agtatttgga tcgggccgag aagctcaagg agtacctgaa gaagggcaag aagaaaccga 421 taaaggaggg cgacgagtcc aattccaagg acgacaagga caagaagagc gacagcgatg 481 acgaggacga cgacccggag aagaagaagc tgcaggccaa gctggagggg gcgattgtca 541 tcgagaagcc gcaggtgcag tggtccgatg tggccggtct ggacgccgcc aaggaggccc 601 tcaaagaggc cgtcatcttg cccatcaagt tcccacagct gttcaccggc aagcgcatac 661 cctggaaggg catcctgctg ttcggcccac ccggtacggg caagtcctac ctggccaagg 721 cagtcgccac cgaagccaac cggtccacat tcttctccgt gtccagctcc gatctgatgt 781 ccaaatggct gggcgagtcc gagaagctgg tcaagaatct ctttgagctg gcccgccagc 841 acaagccatc gatcatattc atcgacgaga tcgattccat gtgctcggcc cgttccgaca 901 acgagaacga cagtgtgcgt cgcatcaaga ccgagttcct ggtgcagatg cagggcgtgg 961 gcaacgacac ggacggcatc ctggtcctgg gcgccaccaa tataccctgg gtcctcgact 1021 ctgccatccg gcgacgcttc gagaagcgca tctacattcc gctgccggag gcgcatgccc 1081 gccttgtcat gttcaagata cacttgggca acaccacaca cgtcctcacc gaacaggatc 1141 tcaaggagat ggctggcaaa accgagggat actctggtgc ggatatatcg attgtggtgc 1201 gcgatgcact gatggagccc gtgcgaaagg tccaaacggc cacgcacttc aagaaggtga 1261 cgggacccag tccctcgaat aaggacgaga ctgtcgatga cctgcttatc ccatgctctc 1321 caggtgatgc gggcgccgtc gagatgaact ggatggatgt gcctagcgac aagctcttcg 1381 aaccggccgt gaccatgcgc gacatgctaa aatcgctgtc gcgcacgaaa cccacagtca 1441 acgaagatga cctgaagaag ctgcgcaaat tcacagagga ctttggccag gagggctagg 1501 gctagggctc tcccccagcc cattccccgc cagcactcca gcaccaccag ctaattctaa 1561 ttgttgccta ttgcataaat tcaaacacgt tttattcggg ctctccatta cctattttct 1621 tttttttttt acatacatat atatatacga taaataacat acgcgaacga tatatgtacg 1681 gttaaatgtt taattcaaat ttcaatacga ttgcaagaga aggaagaaaa gaaagtaaaa 1741 gagtaagagc aaggagaaag gagcaaggag cagagagatg gctatcacca gaagcagcct 1801 gatgttgttg taatcacaaa gtcaatgtat ttttgtactc gtaatgttaa gcaatagaag 1861 agatccaacc cgtaataccc gtaataccat accccatgta cacgacggac gatacgtgtg 1921 tcggagccac cagacagtgt gtgttctagc gcaatgatgc ccgtatatgt agtatatgct 1981 agtaggacag ctgcagaagt gatcagcaga tgaagaacga taagtagtga gcgaagccaa 2041 ccaattcaag caaccaagca aacctaattc aaatgtaact tatgaaaaat aaacgaaaag 2101 tatatactgt a