Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_022364367 1273 bp mRNA linear INV 14-MAY-2021 ACCESSION XM_022364367 VERSION XM_022364367.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022364367.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1273 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..1273 /gene="LOC111072466" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111072466" CDS 123..698 /gene="LOC111072466" /codon_start=1 /product="cdc42 homolog" /protein_id="XP_022220059.1" /db_xref="GeneID:111072466" /translation="MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT HHCQKTPFLLVGTQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSAL TQKGLKNVFDEAILAALEPPEPTKKRKCKFL" misc_feature 129..653 /gene="LOC111072466" /note="cell division cycle 42 (Cdc42) is a small GTPase of the Rho family; Region: Cdc42; cd01874" /db_xref="CDD:206664" misc_feature order(129..131,135..137,213..218,225..230,234..239, 243..245,249..251,276..278,288..305,312..323,330..335, 339..344,429..434) /gene="LOC111072466" /note="GEF (guanine nucleotide exchange factor) interaction site [polypeptide binding]; other site" /db_xref="CDD:206664" misc_feature order(132..134,141..161,168..170,180..185,189..191, 204..206,210..266,276..281,291..311,321..326,330..332, 468..470,480..482,618..620,630..632,639..644,651..653) /gene="LOC111072466" /note="ACK tyrosine kinase interaction site [active]" /db_xref="CDD:206664" misc_feature 150..173 /gene="LOC111072466" /note="G1 box; other site" /db_xref="CDD:206664" misc_feature order(159..176,207..209,216..221,225..227,291..296, 300..302,468..470,474..476,597..602) /gene="LOC111072466" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206664" misc_feature order(180..185,228..230,234..236,240..242,258..260, 321..323,330..332,639..644,651..653) /gene="LOC111072466" /note="CRIB effector interaction site [active]" /db_xref="CDD:206664" misc_feature order(189..197,231..233,237..245,249..251,255..263, 312..314,618..620) /gene="LOC111072466" /note="Par6 cell polarity protein interaction site [active]" /db_xref="CDD:206664" misc_feature 195..242 /gene="LOC111072466" /note="Switch I region; other site" /db_xref="CDD:206664" misc_feature order(216..218,222..224,228..233,303..314,321..323, 330..332) /gene="LOC111072466" /note="GAP (GTPase-activating protein) interaction site [polypeptide binding]; other site" /db_xref="CDD:206664" misc_feature order(225..230,297..299,312..314,318..323,327..332, 339..341,429..434,438..440) /gene="LOC111072466" /note="GDI (guanine nucleotide dissociation inhibitor) interaction site [polypeptide binding]; other site" /db_xref="CDD:206664" misc_feature 225..227 /gene="LOC111072466" /note="G2 box; other site" /db_xref="CDD:206664" misc_feature 291..302 /gene="LOC111072466" /note="G3 box; other site" /db_xref="CDD:206664" misc_feature 297..353 /gene="LOC111072466" /note="Switch II region; other site" /db_xref="CDD:206664" misc_feature 465..476 /gene="LOC111072466" /note="G4 box; other site" /db_xref="CDD:206664" misc_feature 594..602 /gene="LOC111072466" /note="G5 box; other site" /db_xref="CDD:206664" ORIGIN 1 tcgatggttt gacacctctg ttccgtaaaa aaaattgagc ccaacccact ccaaaaaaga 61 aaaagaaata gaacggacgt ctagtacgta ccagaattac aataaattga gttttccaca 121 aaatgcaaac catcaagtgt gtggtcgttg gcgacggagc tgtgggtaag acctgcctgc 181 tcatctccta cacaaccaac aaatttccat cggaatatgt gccaactgta tttgacaatt 241 atgcggtgac ggtgatgatt ggcggcgagc cctacacact gggcctgttc gatacggccg 301 gtcaggagga ttacgatagg cttcgccctt tgtcctatcc gcagacagat gtctttctcg 361 tatgcttctc ggtggtcagt cccagttcat ttgagaatgt taaagaaaag tgggttcctg 421 agatcacgca ccattgccag aagacgccat tcctgctggt gggcacacag atcgatttgc 481 gcgacgagac cagcacactt gagaagttgg ccaagaacaa gcaaaagccc atcaccatgg 541 aacagggcga gaagctggcc aaagagctga aggccgtcaa atatgtcgag tgttcggctc 601 tcacacaaaa gggtctgaaa aatgtcttcg atgaggccat actggccgcc ctggagccac 661 cagaacccac caagaaaagg aagtgcaaat tcttataatt cttttttttt tttctctctt 721 tctctcatgt cctatatatg tgtctgtttt tttcggcgtt tccacactac aatgtccctg 781 cttctgcctt tatagacaag tctcttaccc ccaagataag ttttaaagtt ttaattgtag 841 aattctacac tagttgcagt cctcctcccc ccagtcccag tctctagtac ttcagatggt 901 tcctctgtga gccatccgtc cgcatttcct atcattttat tgggtaaagc tgctgtttaa 961 tttgaatcca gtctgaatag tatctttttt acactatgga taaaggcttc cgccccagcc 1021 cagacccaac cccaaaatcc aaagccttgg caaatggaat caaatataaa tcaaacaaaa 1081 ttcttcgccc gaccccaaag ccagtcgggt cggtcccact actccatttt tgcacccact 1141 gtagtttttt ttttttggcg aaatttctct aattaagtga aaaaagtaaa gatgatgaaa 1201 cacaataaca atatagcgaa acaaattatt tatatataac tttatatata caacaaaaaa 1261 agtcgtaagt gaa