PREDICTED: Drosophila obscura protein rhomboid (LOC111072459),
LOCUS XM_022364346 1912 bp mRNA linear INV 14-MAY-2021
mRNA.
ACCESSION XM_022364346
VERSION XM_022364346.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022364346.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1912
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1912
/gene="LOC111072459"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 3 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111072459"
CDS 373..1626
/gene="LOC111072459"
/codon_start=1
/product="protein rhomboid"
/protein_id="XP_022220038.1"
/db_xref="GeneID:111072459"
/translation="MPVKTVSRQQSQTPAQQLQQQRQRDVENGLYPNIPPERRSPPSR
PQTLRQDTIDMEEIPLNQAISQEPEDRRKMREIFDKHDSDRDGLIGTHELKELISDGY
CRDIPAYIAEQILRRSDVDNDGHLDFEEFYTMSLRHKWMVRNILARYCRFVVPPPKPL
EGDEPDGAYEKQMSICPPPLTMVIFSIIEIIMFLVDIIHFQDDPNYNDRLGESTSGPA
ATLFIYNPYKRYESWRFVSYMFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVALVYL
AGVLAGSMGTSLTSPRIFLAGASGGVYALITAHIATIIMNYSEMEYAIVQLLAFLVFC
FTDLGTSVYRHLTDQHDQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWERILWWVAVIF
YFALMTTGIIIHIFVPDYFPKQEYN"
misc_feature <517..765
/gene="LOC111072459"
/note="Ca2+-binding protein, EF-hand superfamily [Signal
transduction mechanisms]; Region: FRQ1; COG5126"
/db_xref="CDD:444056"
misc_feature 1048..1494
/gene="LOC111072459"
/note="Rhomboid family; Region: Rhomboid; pfam01694"
/db_xref="CDD:426384"
ORIGIN
1 ttaatatttc tcgctcggaa aggttgtggt tttcgcgggt ttgaccattt tttgttgttg
61 tttttttttg gttacgggct aagcggcatc cgttaccagt tcattagctg atttttgttg
121 gtgtgcgtgt gtgtgtgtgt gaaagcgttc ttgctgccaa cgctttactt tttatggccg
181 aatgttaatc ttatcgcaaa tcaaactgcg agcatgagtc caagcagacg aaattgtaat
241 tgaatttcag tatcgcattc gtacgcccct gttggaactc tactttttgt ggtcctgctg
301 ctgctgatcc tcgcaaaatc gcatcgatcg accacaacaa cccattgaga gatctccacc
361 cccaccacca acatgcctgt gaagacggtg tcacggcagc agagccagac gcccgcccag
421 cagctgcagc agcagcgcca gcgggatgtg gagaacggcc tttatccaaa tatcccaccc
481 gagagaagat cgccaccctc gcgcccacaa acgctgcgcc aggacaccat cgacatggag
541 gagatacccc tcaatcaggc aatatcgcag gagccggagg atcgacgaaa gatgagggaa
601 atatttgaca agcacgactc ggaccgcgac ggcctgatcg gcacacacga gctgaaggag
661 ctcatttcgg atggctactg ccgggacata cccgcctata tagccgagca gatacttcgc
721 cgcagcgatg tggacaacga tgggcatctg gactttgagg agttctacac gatgtcgctg
781 cgccacaagt ggatggtgcg caacatactg gccagatatt gccgctttgt ggtgccgccg
841 cccaagccgc tggagggcga tgaaccggac ggtgcctacg agaagcaaat gtctatctgc
901 ccgccgcccc tcaccatggt catcttctcg atcattgaga tcattatgtt tctagtggat
961 attatccact ttcaggacga tcccaactac aacgatcgac tgggcgagag cacaagcggt
1021 ccggcagcga cgctctttat ctataatccg tacaagcgtt acgagtcatg gcgcttcgtc
1081 agctacatgt tcgtccacgt gggcatcatg catctgatga tgaacctaat tattcagata
1141 tttttgggca ttgctttgga gctggtacat cactggtggc gcgtggcgct ggtttatttg
1201 gccggcgtgc tggccggatc catgggcaca tccctgacga gtccgcgcat ctttctcgcc
1261 ggcgcctctg gcggtgtgta tgcgctgatc acagcgcaca ttgccacaat cataatgaac
1321 tactcggaga tggaatacgc gatagtccag ctgctggcct ttctcgtctt ttgtttcacc
1381 gatctgggca cgtctgtgta ccgccacctc accgatcagc atgaccagat tggctatgtg
1441 gcgcatttgt ctggggccgt ggccgggctg ctggtgggca tcggggtgct gcgcaatctg
1501 gaggtgaggc gctgggagcg catcctctgg tgggtggccg tcatattcta ctttgcgctc
1561 atgaccaccg gcatcatcat acacatattt gtgcccgact acttccccaa gcaggagtac
1621 aactgaggct gtcgtccgct gtcgtgcgct gtttagacca caaaaaacat atatagcttt
1681 aagtcgtacc cttagcccta gatcttggat gtccccgccc ccatccgctc tccaccaaag
1741 tgcacttgat gtggaagatt gccgcgaagc cgctgtacag cagcacaagc actgccgttt
1801 gtgtgctata taatttattt tcttacgcct aattttgatg ccctttttgc cgagagtcgt
1861 gccgatccgc tcagaggcaa ccgtccaccc agatggagtc tgtatgtaca ta