PREDICTED: Drosophila obscura xenotropic and polytropic retrovirus
LOCUS XM_022364329 2788 bp mRNA linear INV 14-MAY-2021
receptor 1 (LOC111072451), mRNA.
ACCESSION XM_022364329
VERSION XM_022364329.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq; corrected model.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022364329.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
frameshifts :: corrected 1 indel
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-438 JAECWW010000165.1 1632097-1632534 c
439-539 JAECWW010000165.1 1630133-1630233 c
540-590 JAECWW010000165.1 1630081-1630131 c
591-989 JAECWW010000165.1 1629611-1630009 c
990-1965 JAECWW010000165.1 1628510-1629485 c
1966-2135 JAECWW010000165.1 1628269-1628438 c
2136-2269 JAECWW010000165.1 1628057-1628190 c
2270-2788 JAECWW010000165.1 1627471-1627989 c
FEATURES Location/Qualifiers
source 1..2788
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..2788
/gene="LOC111072451"
/note="The sequence of the model RefSeq transcript was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 1 base in 1 codon;
Derived by automated computational analysis using gene
prediction method: Gnomon. Supporting evidence includes
similarity to: 5 Proteins, and 97% coverage of the
annotated genomic feature by RNAseq alignments, including
16 samples with support for all annotated introns"
/db_xref="GeneID:111072451"
CDS 522..2546
/gene="LOC111072451"
/note="The sequence of the model RefSeq protein was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 1 base in 1 codon"
/codon_start=1
/product="LOW QUALITY PROTEIN: xenotropic and polytropic
retrovirus receptor 1"
/protein_id="XP_022220021.1"
/db_xref="GeneID:111072451"
/translation="MKFAEHLSAHITPEWRKQYINYEEMKAMLYLAVEEAPSVESVED
DVLKRHFANFDENFFHYCDKELKKINTFYSEKLAEATRKFANLNAELKSCIEESERSA
KKSKGQKRLAALPDRKARELKLAFSEFYLSLILLQNYQNLNHTGFRKILKKHDKLLRV
DTGAKWRQEYVEASHFFTNKDIDNIINETETTVTGELEGGDRQRAMKRLRVPPLGEQQ
SPWTTFKVGLFSGSFIVLGIVVVLSAIFHEISGENLKVTFRLYRGPLLIIEFIFLIGV
NIYGWRSSGVNHVLIFELDPRNHLSEQHLMELAAIFGVVWTLSMLSFLYSASLSIPAF
INPLTLTLIMVLFLANPFHVLHHDARFWLWRITGRCISAPFFHVGFADFWLGDQLNSL
ATAILDFEYLICFYFTNGNWSEANDASICMEKDYIIRPIVNCLPAWFRFAQCLRRYRD
SREAFPHLVNAGKYSTTFLVVIFATLKSFHSQNYASTFDNPYTWLWIIASIVSSCYAY
TWDIKMDWGLFDKNAGENTFLREEVVYSSTGFYYFAIVEDLALRFIWVLSFYLTEMKI
VSGDIMTSITGILEVFRRFVWNFFRLENEHLNNCGKFRAVRDISIAPLDSSDQALILR
MMDESDGVINRYTKTNRPKPKKIKDPEKRSLLQPRGSMPDLRIDIDSKKL"
misc_feature 525..989
/gene="LOC111072451"
/note="SPX domain of the xenotropic and polytropic
retrovirus receptor 1 (XPR1) and related proteins; Region:
SPX_XPR1_like; cd14477"
/db_xref="CDD:269898"
misc_feature 1293..2312
/gene="LOC111072451"
/note="EXS family; Region: EXS; pfam03124"
/db_xref="CDD:460816"
ORIGIN
1 tgcacttctc cctccgccga aatagttagt tataattgcc acccaaaaga aatacatgca
61 gcagatagat agtacaaagt ttctggattc tttgtttttg ttattccgtc gtacggtctg
121 gtcgtctgct ccgtgcgtgg gtgttcggtt cggttgtgcg cgcttccctg tgataagcag
181 tgtacttaat aaatcagcga ctgttgacaa ttagtaatga ttgtgagtgg atcaggtgct
241 tgctgagaga aaaaacttca tttaacaatc catctatata gctttaacaa tgtgctgctg
301 caacgaattc tgtacaaaag tcggatagct cctcctctac gattggccat tggcactctt
361 tgcagcgctg cccactgcac tgtaactgca agctgcagca tcaggcagca gcgcaacagc
421 agcagcagca gcgtatatca cttgcagacg cacttccagt gagggagagg agagacaatc
481 cttggaatca aagctagagg caaagccgag ccgccttaac catgaagttt gccgagcatc
541 tgtcggcgca cataacgccc gagtggcgca agcagtacat caactatgag gaaatgaagg
601 ccatgctgta cttggccgtc gaggaggccc cttcggtgga gagtgtcgag gatgatgtgc
661 tgaagcgtca ctttgccaac ttcgatgaga atttctttca ctactgcgac aaggaactga
721 agaagatcaa tacgttctat tcggaaaagc tggcggaggc cacgcgcaag tttgccaatc
781 tgaatgcgga gctaaagagc tgcatcgagg agtccgagcg gagtgcaaaa aagtcaaagg
841 gacagaagcg tctggccgcc ctgcccgatc gcaaggcgcg cgaactgaag ttggccttca
901 gcgagttcta cctgagtctc attctcctgc agaactatca gaatctgaat cacactgggt
961 tccgtaagat actcaaaaag catgacaagc ttttgcgcgt tgacaccggc gccaagtggc
1021 gacaggagta cgtggaggcg tcgcatttct ttaccaacaa agacatcgac aacattataa
1081 atgagacgga gacgacggta accggcgaac tggagggcgg cgatcgccag cgggcaatga
1141 aacggctgcg cgtaccaccg ctgggggagc agcagagtcc gtggaccacc tttaaggtgg
1201 gcctcttctc cggcagcttc attgtgctgg gcattgtggt ggtgctgtcg gccatcttcc
1261 atgagatcag cggggagaac ctgaaggtca cattccgcct ctatcgcggc cccctgctga
1321 tcatcgagtt tatcttcctg attggcgtga atatctacgg ctggcgttcg tccggcgtta
1381 atcatgtgct catttttgaa ctggatccgc gcaatcatct ctccgagcag catctcatgg
1441 aactggccgc catcttcggt gtggtatgga cgctcagcat gctgagcttc ctgtacagcg
1501 ccagcctgtc cattccggcg ttcattaacc ccctgacgct cacgctaatc atggtgctct
1561 tcctggccaa tccgtttcat gtgctgcatc acgatgcccg cttctggctg tggcggatca
1621 ccggacggtg catatcggcg ccattctttc acgtgggctt cgccgatttc tggctgggcg
1681 atcagctcaa ctctctggcc accgccatac tggactttga gtatctcatc tgcttctact
1741 ttaccaacgg caactggtcg gaggcgaatg atgcctccat ttgcatggag aaggactaca
1801 tcatccggcc gattgtcaac tgtctgccgg cgtggttccg attcgcccaa tgcctgcgac
1861 ggtaccggga ctcgcgtgag gcctttcccc atctggtaaa tgccggcaaa tactcgacca
1921 cgttcctcgt cgtgatcttt gccaccctca agtcgttcca cagtcagaac tatgccagca
1981 cgtttgacaa tccgtatacg tggctctgga taatcgcctc gatagtgtcc tcctgctatg
2041 cgtacacgtg ggatatcaag atggattggg gcctgttcga taagaatgcc ggcgagaata
2101 catttctgcg ggaagaggtg gtctactcat cgacgggctt ctactatttt gcaattgttg
2161 aggatctggc actgcgcttc atttgggtgc tttccttcta tctgacggag atgaagattg
2221 ttagcggtga catcatgacc tccattacgg gcatccttga ggtcttccgt cgctttgtgt
2281 ggaacttctt tcgattggag aacgagcatc tgaacaattg cggcaagttc cgagcggtgc
2341 gtgacatttc gattgcgccg ctcgactcct ccgatcaagc gctcatccta cgcatgatgg
2401 acgagtcgga tggtgtgatc aatcgctaca caaagacgaa ccgacccaag ccgaaaaaga
2461 tcaaggatcc ggagaagcgc agcctgttgc agccgcgcgg ctcaatgccc gatcttcgga
2521 tagatatcga tagcaaaaag ttataggcag acctacgcca acggctcgac caaattgtgc
2581 tgcccatgga acgattattg agaatgtggt gcaacgattc ggccctaacg ataattctaa
2641 tactattatc gacctttttt ttgttcatct tttttttgtg cccattgttt agctaatttg
2701 tactatatct atatcatatt taacttacta gttacgttaa gtgtacttaa acgcaaagga
2761 aacggaaacg gaaaggcaaa cgaaactg