PREDICTED: Drosophila obscura Alstrom syndrome protein 1 homolog a
LOCUS XM_022364326 3731 bp mRNA linear INV 14-MAY-2021
(LOC111072447), mRNA.
ACCESSION XM_022364326
VERSION XM_022364326.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq; corrected model; includes ab initio.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022364326.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 1% of CDS bases
frameshifts :: corrected 1 indel
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-1499 JAECWW010000165.1 2003343-2004841
1500-1741 JAECWW010000165.1 2004909-2005150
1742-2740 JAECWW010000165.1 2005152-2006150
2741-3398 JAECWW010000165.1 2006226-2006883
3399-3547 JAECWW010000165.1 2006954-2007102
3548-3731 JAECWW010000165.1 2007170-2007353
FEATURES Location/Qualifiers
source 1..3731
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3731
/gene="LOC111072447"
/note="The sequence of the model RefSeq transcript was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 1 base in 1 codon;
Derived by automated computational analysis using gene
prediction method: Gnomon. Supporting evidence includes
similarity to: 5 Proteins, and 99% coverage of the
annotated genomic feature by RNAseq alignments, including
15 samples with support for all annotated introns"
/db_xref="GeneID:111072447"
CDS 164..3610
/gene="LOC111072447"
/note="The sequence of the model RefSeq protein was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 1 base in 1 codon"
/codon_start=1
/product="LOW QUALITY PROTEIN: Alstrom syndrome protein 1
homolog a"
/protein_id="XP_022220018.2"
/db_xref="GeneID:111072447"
/translation="MPGHQRIGTHLRKHTDEKRLLASRVPPKAREYLSELAVDRELER
FMALSSTNSSGTSRSNVSMYTAPLHCTPRSVSVAPSKPARCSGGSGGKTTSAAAGQPH
QHQETAAAAADATVASVPKETQSDKEIIRIIPIVATDCVVGCEGMRTSQAVSAEDLRT
PTKPAGSQAPDRTPEKKSKNTQTPESAVKSHKRLEWDPAADVGYYKRAVSTSNISTLE
RSILEECWRQPQQRSETDLDRLQLEQGTTLAQRPPLASSTFVNRSERRTTPSLGSIRS
SSNQSNRSSSRRESKSQSRCTSPNGGSSVASSFDYHSSLPSAQSSSQKQLAKEEERQY
TAAQLEKVLAGAASRRQAKEDKENCQPAAQRGSSSSSSSTAAGTEAETGPGPAGGPKG
ELDLGVDLLCSLVQARSLSHKQKKHLIRDIAKRISCIELGESLRSRQSPTKAKAAAQL
QDMATNTTASVARPVPAPRTRILIANSSGTSTASSSKEMVTARTNPRACKAAKEPTTE
PQQLQLPSSEASSISHEGEATSSHSNEAVPAPLPATTTAPAETELVSQEWLNPMTQSE
IEYEERSRSSSNDSERRLTLSWIELEIKRLQTVYKIVNSKSFLQIVPVDDKSPTAAIE
YDPLISAEPLIELLPDGEGPQRRATVRARMIGAGQEQEPLLLGVQVKHVHPRGLQEKP
VHLQGEQEEPLRSVEQPPDEVRCITKPHADVESPAAAPELQAIPTPPPPPPPPPPRGI
PQRGKMATPNSSSDGGRSESVCSFVQQRQRQFMEHYQNQQQQQLQQLQQHQQLQQLQQ
QQQKQQKQRKQQRILPRMPHLLHHPQHQEHQHYHPLVHGHGQGHGLCVHQQEQQQQQL
QHMAPQHYIQMQYTQAAGSGSGMDAGGVYYTAVPHGYSLLSSDAMAEYVQVASEAAEG
AEERCAATTRTTTTSSSSISSMLCLSSEMSIPMGGGGVVNTSKTTTTTTTHQYDEATS
GSRCQRKRRDQTQKQTQTQTQRRGAHGIAYMIQFGESEMQHTMSLQDHLQLARPKFCA
KSKQRKAILNQMQMLRSERRRELEELLGEDCTLETLDRRLQQLPPPVTSCVRVFSTKE
MKAMTSKRCQRLPEVVAAQNREREERRRRSNRLMRDVFNRRMQNRVSKGKISLNHSLT
II"
misc_feature <1673..>2056
/gene="LOC111072447"
/note="Sperm equatorial segment protein 1; Region: SPESP1;
pfam15754"
/db_xref="CDD:464848"
misc_feature 3200..3577
/gene="LOC111072447"
/note="ALMS motif; Region: ALMS_motif; pfam15309"
/db_xref="CDD:464634"
ORIGIN
1 tagccaacac tgaacggata tcagcacttt gaaacactgc ctaacaatgc acgaaaattc
61 cgtcgcattt aaaaaaatgc aatttacatt ttaaaacaaa acaccaactg caattttgac
121 atattagttt atattgctgc caacacacgt gagacggtgc aaaatgcctg gccaccagcg
181 aattggcaca cacctccgca agcacacgga cgagaagcgt ctgctggcgt cgcgcgtccc
241 tcccaaagcc agggaatacc tatccgaact ggccgtcgat cgggagctgg agcgcttcat
301 ggccctgtcc tcgaccaata gcagtggcac cagtcgcagc aatgtgagca tgtacacggc
361 tcccctacac tgcactcccc gttcagtgtc agtggcgcca tcaaagccag cccgctgcag
421 tggcgggagc gggggaaaaa cgacatctgc agcagctgga caaccgcatc agcatcagga
481 aacagctgcc gctgccgctg acgctacagt tgcgtctgtg ccaaaggaaa cacaaagcga
541 taaggagatc atcaggatta tacccattgt agccaccgac tgcgttgtgg gctgcgaagg
601 gatgcgcacc agtcaagccg tgtccgcgga ggatctacgc acacccacca agccagcggg
661 cagtcaggcg ccagacagga cgcccgagaa aaagtcaaaa aatacccaaa cgcccgaatc
721 ggccgtgaaa tcgcacaagc gccttgaatg ggacccagcc gcggatgtgg gctactacaa
781 gcgggcggtg tccaccagca acataagcac cctggagcgt tccattctgg aggagtgctg
841 gcggcagcca cagcagcgtt cggagaccga tttggatagg ctgcagctgg agcagggaac
901 aacgctggca cagcggccac cgctcgcctc cagtacgttt gtgaaccgca gcgaacgcag
961 gaccacgccc agtctgggga gcattcgcag cagcagcaat caaagcaatc gcagcagctc
1021 caggcgagag tccaagtcgc agtcacgctg cacatcccca aatggcggca gctcggtggc
1081 cagtagcttt gattatcact cgtcgttgcc ctctgctcag agtagctccc aaaagcagct
1141 ggcaaaggag gaggagcgtc agtatacggc cgcgcagctg gagaaggttc tggccggggc
1201 tgccagtcga aggcaggcga aggaggacaa agaaaactgt cagccggctg cccagagagg
1261 tagctcctct tcttcgtcct ctactgctgc aggaactgaa gctgaaacag gaccgggccc
1321 tgctggtggt cccaagggag agcttgactt gggcgtggat ctgctctgtt cgctggtgca
1381 ggcccgcagt ctcagccaca agcagaagaa gcatttgata cgggacatag cgaagcgcat
1441 ctcctgcata gaactggggg agagcctgcg ctcccgccaa agcccaacaa aggcaaaagc
1501 tgctgcccag ctgcaggaca tggccaccaa cactactgcc agtgtggcac gtcctgtgcc
1561 cgctccgagg acacgcattt tgatagccaa ctcctcgggc acctccacag cgagcagctc
1621 caaggagatg gtcaccgcac ggaccaatcc acgggcctgc aaagcagcca aagaacccac
1681 gacggaacca cagcagctgc agcttccctc ttcggaggcc agcagcatct cccatgaggg
1741 tgaagccaca tcttcgcaca gcaatgaggc tgttcccgca ccgctacctg ctaccactac
1801 cgctcccgcg gaaacggagc tagtgagcca ggagtggctc aatcccatga cccagagcga
1861 gatcgagtac gaggagcgtt cgcgttcgtc cagcaacgat tcggagcgtc gcctaacgct
1921 cagttggatc gagttggaga tcaagcggct gcagacggtg tacaagatcg tgaatagcaa
1981 atcgttcctc cagattgttc cagttgatga caagagtccc acggctgcca tcgagtacga
2041 tcccctgatc agtgcagagc cgttgattga gctgctgccg gatggggagg ggccacagcg
2101 tcgagccact gttcgggcac gcatgattgg tgctggtcaa gagcaggaac cacttctgtt
2161 gggtgtgcaa gtgaagcatg tacaccctcg gggattgcaa gagaagcctg tgcatcttca
2221 gggagaacaa gaggagcctc taagatccgt agagcagccc ccagacgagg ttagatgcat
2281 aacaaagcca cacgctgatg tggagtcgcc agcagcagca ccggaattac aggcgatacc
2341 aaccccacca ccaccgccac ctccaccacc accgaggggc attccacagc gaggaaaaat
2401 ggccacaccc aacagctcca gtgatggcgg acgcagcgaa agtgtgtgct cttttgtgca
2461 gcagcgacag cggcagttta tggagcacta tcagaaccaa cagcagcagc agctgcaaca
2521 gctgcaacag caccagcagc tgcagcagct gcagcagcag cagcagaaac aacagaagca
2581 aaggaagcag cagcgtatac tgccacggat gccacatctt ctacaccatc cacagcatca
2641 ggagcatcaa cattaccatc cactggttca tgggcatggg caggggcacg ggctgtgtgt
2701 gcaccagcaa gagcagcagc agcagcagct gcagcatatg gcaccacagc attacattca
2761 aatgcaatat acgcaggcag caggatcagg ctcaggaatg gacgctggtg gtgtctacta
2821 cacagcagtg ccccacgggt acagcctttt gagcagcgat gccatggccg aatatgtgca
2881 ggtggcatca gaagcagcag aaggcgccga agaacgctgc gccgccacca cgaggacaac
2941 gaccaccagc agcagttcga tctcttccat gttgtgcctc agctcggaga tgtccatacc
3001 aatggggggc ggtggagtgg taaacacctc caagacgacc accacaacca ccacgcatca
3061 gtacgacgag gctacatcgg gcagtaggtg tcagcggaag cgcagggacc agacacagaa
3121 gcaaacgcag acacagacac agcgcagggg agcgcatggc attgcgtata tgattcagtt
3181 tggggagagc gaaatgcagc acacaatgtc gctgcaggat cacctgcagc tcgctcgtcc
3241 caagttctgt gccaagtcca agcagcgcaa ggccatactc aatcaaatgc agatgctgcg
3301 cagcgagcga cggcgcgaac tggaggagct gctcggtgag gattgcaccc tggagacact
3361 ggacaggcgg ctgcaacagc tgccaccgcc agtcacatct tgcgttcgag ttttctccac
3421 gaaggagatg aaggccatga ccagcaaacg atgccagcga ctgcccgagg tggtggccgc
3481 tcagaatcgt gagcgcgagg agcgacggcg tcgcagcaat cgcctcatgc gggatgtctt
3541 caatcggcgc atgcaaaacc gcgtgtccaa gggcaagata tccctgaacc acagcctgac
3601 aatcatttag gaataccacc ccctcccacc cctacaagat ggagacaaca ctttgccagt
3661 tgaaggcttg atttatgttt ttatattatc acttttaatt tttgttttcg aataaaaaac
3721 tgttcaaatg a