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LOCUS XM_022364326 3731 bp mRNA linear INV 14-MAY-2021 (LOC111072447), mRNA. ACCESSION XM_022364326 VERSION XM_022364326.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model; includes ab initio. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022364326.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1499 JAECWW010000165.1 2003343-2004841 1500-1741 JAECWW010000165.1 2004909-2005150 1742-2740 JAECWW010000165.1 2005152-2006150 2741-3398 JAECWW010000165.1 2006226-2006883 3399-3547 JAECWW010000165.1 2006954-2007102 3548-3731 JAECWW010000165.1 2007170-2007353 FEATURES Location/Qualifiers source 1..3731 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3731 /gene="LOC111072447" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:111072447" CDS 164..3610 /gene="LOC111072447" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: Alstrom syndrome protein 1 homolog a" /protein_id="XP_022220018.2" /db_xref="GeneID:111072447" /translation="MPGHQRIGTHLRKHTDEKRLLASRVPPKAREYLSELAVDRELER FMALSSTNSSGTSRSNVSMYTAPLHCTPRSVSVAPSKPARCSGGSGGKTTSAAAGQPH QHQETAAAAADATVASVPKETQSDKEIIRIIPIVATDCVVGCEGMRTSQAVSAEDLRT PTKPAGSQAPDRTPEKKSKNTQTPESAVKSHKRLEWDPAADVGYYKRAVSTSNISTLE RSILEECWRQPQQRSETDLDRLQLEQGTTLAQRPPLASSTFVNRSERRTTPSLGSIRS SSNQSNRSSSRRESKSQSRCTSPNGGSSVASSFDYHSSLPSAQSSSQKQLAKEEERQY TAAQLEKVLAGAASRRQAKEDKENCQPAAQRGSSSSSSSTAAGTEAETGPGPAGGPKG ELDLGVDLLCSLVQARSLSHKQKKHLIRDIAKRISCIELGESLRSRQSPTKAKAAAQL QDMATNTTASVARPVPAPRTRILIANSSGTSTASSSKEMVTARTNPRACKAAKEPTTE PQQLQLPSSEASSISHEGEATSSHSNEAVPAPLPATTTAPAETELVSQEWLNPMTQSE IEYEERSRSSSNDSERRLTLSWIELEIKRLQTVYKIVNSKSFLQIVPVDDKSPTAAIE YDPLISAEPLIELLPDGEGPQRRATVRARMIGAGQEQEPLLLGVQVKHVHPRGLQEKP VHLQGEQEEPLRSVEQPPDEVRCITKPHADVESPAAAPELQAIPTPPPPPPPPPPRGI PQRGKMATPNSSSDGGRSESVCSFVQQRQRQFMEHYQNQQQQQLQQLQQHQQLQQLQQ QQQKQQKQRKQQRILPRMPHLLHHPQHQEHQHYHPLVHGHGQGHGLCVHQQEQQQQQL QHMAPQHYIQMQYTQAAGSGSGMDAGGVYYTAVPHGYSLLSSDAMAEYVQVASEAAEG AEERCAATTRTTTTSSSSISSMLCLSSEMSIPMGGGGVVNTSKTTTTTTTHQYDEATS GSRCQRKRRDQTQKQTQTQTQRRGAHGIAYMIQFGESEMQHTMSLQDHLQLARPKFCA KSKQRKAILNQMQMLRSERRRELEELLGEDCTLETLDRRLQQLPPPVTSCVRVFSTKE MKAMTSKRCQRLPEVVAAQNREREERRRRSNRLMRDVFNRRMQNRVSKGKISLNHSLT II" misc_feature <1673..>2056 /gene="LOC111072447" /note="Sperm equatorial segment protein 1; Region: SPESP1; pfam15754" /db_xref="CDD:464848" misc_feature 3200..3577 /gene="LOC111072447" /note="ALMS motif; Region: ALMS_motif; pfam15309" /db_xref="CDD:464634" ORIGIN 1 tagccaacac tgaacggata tcagcacttt gaaacactgc ctaacaatgc acgaaaattc 61 cgtcgcattt aaaaaaatgc aatttacatt ttaaaacaaa acaccaactg caattttgac 121 atattagttt atattgctgc caacacacgt gagacggtgc aaaatgcctg gccaccagcg 181 aattggcaca cacctccgca agcacacgga cgagaagcgt ctgctggcgt cgcgcgtccc 241 tcccaaagcc agggaatacc tatccgaact ggccgtcgat cgggagctgg agcgcttcat 301 ggccctgtcc tcgaccaata gcagtggcac cagtcgcagc aatgtgagca tgtacacggc 361 tcccctacac tgcactcccc gttcagtgtc agtggcgcca tcaaagccag cccgctgcag 421 tggcgggagc gggggaaaaa cgacatctgc agcagctgga caaccgcatc agcatcagga 481 aacagctgcc gctgccgctg acgctacagt tgcgtctgtg ccaaaggaaa cacaaagcga 541 taaggagatc atcaggatta tacccattgt agccaccgac tgcgttgtgg gctgcgaagg 601 gatgcgcacc agtcaagccg tgtccgcgga ggatctacgc acacccacca agccagcggg 661 cagtcaggcg ccagacagga cgcccgagaa aaagtcaaaa aatacccaaa cgcccgaatc 721 ggccgtgaaa tcgcacaagc gccttgaatg ggacccagcc gcggatgtgg gctactacaa 781 gcgggcggtg tccaccagca acataagcac cctggagcgt tccattctgg aggagtgctg 841 gcggcagcca cagcagcgtt cggagaccga tttggatagg ctgcagctgg agcagggaac 901 aacgctggca cagcggccac cgctcgcctc cagtacgttt gtgaaccgca gcgaacgcag 961 gaccacgccc agtctgggga gcattcgcag cagcagcaat caaagcaatc gcagcagctc 1021 caggcgagag tccaagtcgc agtcacgctg cacatcccca aatggcggca gctcggtggc 1081 cagtagcttt gattatcact cgtcgttgcc ctctgctcag agtagctccc aaaagcagct 1141 ggcaaaggag gaggagcgtc agtatacggc cgcgcagctg gagaaggttc tggccggggc 1201 tgccagtcga aggcaggcga aggaggacaa agaaaactgt cagccggctg cccagagagg 1261 tagctcctct tcttcgtcct ctactgctgc aggaactgaa gctgaaacag gaccgggccc 1321 tgctggtggt cccaagggag agcttgactt gggcgtggat ctgctctgtt cgctggtgca 1381 ggcccgcagt ctcagccaca agcagaagaa gcatttgata cgggacatag cgaagcgcat 1441 ctcctgcata gaactggggg agagcctgcg ctcccgccaa agcccaacaa aggcaaaagc 1501 tgctgcccag ctgcaggaca tggccaccaa cactactgcc agtgtggcac gtcctgtgcc 1561 cgctccgagg acacgcattt tgatagccaa ctcctcgggc acctccacag cgagcagctc 1621 caaggagatg gtcaccgcac ggaccaatcc acgggcctgc aaagcagcca aagaacccac 1681 gacggaacca cagcagctgc agcttccctc ttcggaggcc agcagcatct cccatgaggg 1741 tgaagccaca tcttcgcaca gcaatgaggc tgttcccgca ccgctacctg ctaccactac 1801 cgctcccgcg gaaacggagc tagtgagcca ggagtggctc aatcccatga cccagagcga 1861 gatcgagtac gaggagcgtt cgcgttcgtc cagcaacgat tcggagcgtc gcctaacgct 1921 cagttggatc gagttggaga tcaagcggct gcagacggtg tacaagatcg tgaatagcaa 1981 atcgttcctc cagattgttc cagttgatga caagagtccc acggctgcca tcgagtacga 2041 tcccctgatc agtgcagagc cgttgattga gctgctgccg gatggggagg ggccacagcg 2101 tcgagccact gttcgggcac gcatgattgg tgctggtcaa gagcaggaac cacttctgtt 2161 gggtgtgcaa gtgaagcatg tacaccctcg gggattgcaa gagaagcctg tgcatcttca 2221 gggagaacaa gaggagcctc taagatccgt agagcagccc ccagacgagg ttagatgcat 2281 aacaaagcca cacgctgatg tggagtcgcc agcagcagca ccggaattac aggcgatacc 2341 aaccccacca ccaccgccac ctccaccacc accgaggggc attccacagc gaggaaaaat 2401 ggccacaccc aacagctcca gtgatggcgg acgcagcgaa agtgtgtgct cttttgtgca 2461 gcagcgacag cggcagttta tggagcacta tcagaaccaa cagcagcagc agctgcaaca 2521 gctgcaacag caccagcagc tgcagcagct gcagcagcag cagcagaaac aacagaagca 2581 aaggaagcag cagcgtatac tgccacggat gccacatctt ctacaccatc cacagcatca 2641 ggagcatcaa cattaccatc cactggttca tgggcatggg caggggcacg ggctgtgtgt 2701 gcaccagcaa gagcagcagc agcagcagct gcagcatatg gcaccacagc attacattca 2761 aatgcaatat acgcaggcag caggatcagg ctcaggaatg gacgctggtg gtgtctacta 2821 cacagcagtg ccccacgggt acagcctttt gagcagcgat gccatggccg aatatgtgca 2881 ggtggcatca gaagcagcag aaggcgccga agaacgctgc gccgccacca cgaggacaac 2941 gaccaccagc agcagttcga tctcttccat gttgtgcctc agctcggaga tgtccatacc 3001 aatggggggc ggtggagtgg taaacacctc caagacgacc accacaacca ccacgcatca 3061 gtacgacgag gctacatcgg gcagtaggtg tcagcggaag cgcagggacc agacacagaa 3121 gcaaacgcag acacagacac agcgcagggg agcgcatggc attgcgtata tgattcagtt 3181 tggggagagc gaaatgcagc acacaatgtc gctgcaggat cacctgcagc tcgctcgtcc 3241 caagttctgt gccaagtcca agcagcgcaa ggccatactc aatcaaatgc agatgctgcg 3301 cagcgagcga cggcgcgaac tggaggagct gctcggtgag gattgcaccc tggagacact 3361 ggacaggcgg ctgcaacagc tgccaccgcc agtcacatct tgcgttcgag ttttctccac 3421 gaaggagatg aaggccatga ccagcaaacg atgccagcga ctgcccgagg tggtggccgc 3481 tcagaatcgt gagcgcgagg agcgacggcg tcgcagcaat cgcctcatgc gggatgtctt 3541 caatcggcgc atgcaaaacc gcgtgtccaa gggcaagata tccctgaacc acagcctgac 3601 aatcatttag gaataccacc ccctcccacc cctacaagat ggagacaaca ctttgccagt 3661 tgaaggcttg atttatgttt ttatattatc acttttaatt tttgttttcg aataaaaaac 3721 tgttcaaatg a