PREDICTED: Drosophila obscura protein Flattop homolog
LOCUS XM_022364321 787 bp mRNA linear INV 14-MAY-2021
(LOC111072444), transcript variant X1, mRNA.
ACCESSION XM_022364321
VERSION XM_022364321.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022364321.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..787
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..787
/gene="LOC111072444"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 3 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 6 samples with support for all annotated
introns"
/db_xref="GeneID:111072444"
CDS 125..760
/gene="LOC111072444"
/codon_start=1
/product="protein Flattop homolog isoform X1"
/protein_id="XP_022220013.2"
/db_xref="GeneID:111072444"
/translation="MAFHFSANQFEDRFQAPGLCNWEYPRFAPPRPRRYLKKATPIVD
NSGHLLPTARRDGNSFGRYRGTYELPLKITRSFCGHYDACLSGRYKFRDFPRDLCNCQ
RENRRALACDKRVTLGVSGDPYWARPKCQSKCEGIQQIKELHQLSVRCKRAICPIKSP
RTVCVPAKSRITCVKVDRSRKRTITAFAANREPSKATKEEAKTKAPKQPKK"
misc_feature 128..343
/gene="LOC111072444"
/note="protein Flattop and similar proteins; Region:
Flattop; cd23705"
/db_xref="CDD:467918"
misc_feature order(128..160,164..166,173..199,215..220,227..253,
260..262,266..271,281..289,302..331,335..343)
/gene="LOC111072444"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:467918"
ORIGIN
1 cctcgattcc aaattcaaat attcaaaaat cacaaaatta aaaaatcaac aaaaactcaa
61 aaatccgaaa cctaaaaaat caaaaactca aaaattccaa aatcttttgc tgtgtttgtg
121 gacaatggct tttcatttta gtgctaatca gtttgaggac cgctttcagg cgccaggact
181 ctgcaattgg gagtatccac gctttgcacc gccacggccc aggcgatacc tgaagaaagc
241 cacgcccatt gtggacaata gtggtcacct gctgcccacc gcccgaaggg acggcaactc
301 ctttggacga tatcgtggca cctacgagct accgctgaag ataacgcgca gcttttgcgg
361 ccactatgac gcctgcttga gcggacgcta caagttccgc gactttccac gggatctgtg
421 caactgccag cgggagaacc gtcgcgcctt ggcctgcgac aagcgggtga cactgggcgt
481 tagcggggat ccgtattggg cgcgtcccaa gtgccagtcc aagtgcgagg gcatccagca
541 gatcaaggag ctccatcagc tgagtgttcg ctgcaagcgt gccatttgtc ccatcaagag
601 ccccagaacg gtttgcgtgc cagccaagtc gcggataacc tgcgtcaagg tggatagatc
661 acgcaagcga accatcacgg ccttcgctgc gaatcgtgag cccagcaagg cgaccaaaga
721 agaagcaaag accaaagccc ccaagcagcc aaagaaatag aagcagttaa agatgaagca
781 gatacag