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LOCUS XM_022364310 4086 bp mRNA linear INV 14-MAY-2021 variant X2, mRNA. ACCESSION XM_022364310 VERSION XM_022364310.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022364310.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4086 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..4086 /gene="LOC111072436" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:111072436" CDS 101..3118 /gene="LOC111072436" /codon_start=1 /product="uncharacterized protein LOC111072436 isoform X2" /protein_id="XP_022220002.2" /db_xref="GeneID:111072436" /translation="MSSPDEPGPSNGRKSRSKRRDKSVSRSSNSSSGSNFGRHSSNVV NGGSLRDRLLVANAMATDETNSMVNGNDKNQRKKKKKKSSRRKSQTGLKGYSGRNPSL SYLQNEISDDSDEDTRDEVMIPVTDSSQLSRKRPKSRMGIKTNDNNVENKAKVSAASI PPSKKKKKNQTPCVFIPRKLICGDDPLPDPLPEVAPRRKSIYSDAAKKPKPNLSDELY RLPFKFGWKREVVTPSPLSNTSNHTIYTSPCGKRCRQISEIVPLLTNELTIEHFIFGT HLLGAGSEFETSRQALSREMHYAALKERRKSLAADKSTASATIKVERKRRQTMGAESY PKEASASAPFGKRRKSINPAESVTEPSKPMAVESTKPLAGEVAALVTGKRVPKPKVPK GASPPTEGWTSTMAVKGNARLLAAASNGNARTAGSSNASGSSNAAPVSHAKRATCGSC LKLIKGSVCQSCVRSSAREEGPNAGRIMDEYEELEEDEEESEESYQAGTVSNGLKVTK MIEPPGEMPPAELFSTDKSPVTTPTDLYMPQEVVVIGGRKAISIVGEPTTTSQPKVIV PNPPDLSSYEEFYGKRIAAPKQLASPTSLWGAALGEGFNCHFLLSLMKTLNQQDRVNC SNVCKLWNLVSRDSDVWKSVSLRDTKVNNWPALVREMARNCTRELDMMGAIIPNTGTL IAGDMRVLTDMRTVRTNHTKADFLHQIFSGLPQLEKLIGTCVSSGLIMTDIDKMENLN ELRIRMTDTKASITGLPHVGKLTHLRVLSLRGVKNLGNLLFLKELPNLETLNLGYCQS MHRLQLGNEVLPTLTKLQRFRLETDPRKKTSFPIDEIMKGLAHAGGVRRLELVNVDVD CKFSQLLSNCNTVEELLLIPKCQTNTAVMIRSVMGISRNGSQLKQFKLVLITQLLTAT GAMLRNPDVPMVPVIRPIPGILLGDRLNSCSKECQEQQHDRCVAGLPFERLKIIMSEL MPNSSPSVVTMAMMDTPTIQLGRLPPDATPPNF" misc_feature 752..943 /gene="LOC111072436" /note="MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to...; Region: MBD; cl00110" /db_xref="CDD:469618" misc_feature order(785..787,791..793,797..799,818..820,824..826, 851..853,860..862,872..874) /gene="LOC111072436" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238069" misc_feature <1946..2035 /gene="LOC111072436" /note="Region: F-box-like; pfam12937" /db_xref="CDD:463757" misc_feature <2228..>2491 /gene="LOC111072436" /note="Leucine-rich repeat (LRR) protein [Transcription]; Region: LRR; COG4886" /db_xref="CDD:443914" ORIGIN 1 tactgtgtac ggtgtgccgt gactttgtcc gccgcagaaa gtggttaatt ttggttaaaa 61 tagctcaagt gttggctcaa ttttgtgtaa ttcatcagat atgagctctc ccgatgaacc 121 tggcccttca aatggacgta agtcccgatc gaagcggcgg gataagtccg tgtcccgaag 181 cagtaattcc agtagtgggt caaactttgg tcgacatagt agtaacgtcg tcaacggggg 241 aagcttgaga gaccgattgc tggtggctaa cgccatggcc actgatgaaa caaacagcat 301 ggtaaatgga aacgataaaa accagagaaa gaagaagaag aagaagtcaa gtcgacgcaa 361 gtcacagaca ggattgaagg gatattccgg aagaaatcct tccctctcgt atttacagaa 421 cgaaatctcc gatgactccg atgaagatac gcgggatgag gtgatgattc ctgtcactga 481 ttccagccaa ttgtcccgaa aacgcccaaa gtcgagaatg ggaattaaga caaacgacaa 541 caacgtggaa aacaaggcga aggtgtcagc tgcgtcgatt cctccttcaa agaaaaagaa 601 gaagaatcag actccttgtg ttttcatacc cagaaaatta atttgtggtg atgatccgtt 661 gcccgatcca ttgccagagg tggcccctcg acgcaaaagt atttactcgg atgcggccaa 721 gaagccgaag ccaaatttgt ccgacgagct ctatcgtctg ccgtttaaat ttggctggaa 781 gcgtgaggtg gtgactccca gcccactgtc caacacttcg aatcacacaa tctacacatc 841 gccctgcggc aagaggtgcc gacaaatcag tgagattgta ccattgctga cgaatgaact 901 caccatcgag cactttatct ttgggacgca tctcctgggt gccggatccg agttcgagac 961 gagccgtcag gccttgagca gggagatgca ctatgccgct ttaaaggagc gccgcaaatc 1021 gctggcggcc gacaaatcga cagcgtcggc cacaattaag gtggagcgca aacgtcgtca 1081 aacgatggga gccgaatcct atccgaagga ggcatctgcc tctgcgccat ttggcaaacg 1141 tcgcaaatcc atcaatccag cggaatcggt caccgaaccc agtaagccga tggcagtcga 1201 atccacgaaa cctctggcag gcgaagtggc ggctcttgta acaggcaaac gcgtacccaa 1261 gccgaaggtg ccaaagggcg ccagccctcc cactgagggt tggacctcca ccatggccgt 1321 caagggaaat gcgcgtctcc tggctgccgc cagcaatggc aacgccagaa ctgctggatc 1381 ttcgaatgca agcggcagct caaatgccgc cccggtgagc catgccaagc gcgccacctg 1441 tggatcctgc ctaaagctaa tcaagggtag cgtttgccag agctgcgtgc ggtcgtcggc 1501 gagggaggag ggaccaaatg ctggccgcat aatggatgaa tatgaagaac tggaggagga 1561 cgaggaggaa agcgaggaga gctaccaggc gggcactgtg agcaatgggc taaaagtcac 1621 aaaaatgatc gagccgcccg gcgagatgcc accagcggag ctattcagca cagacaaatc 1681 cccagtgaca acgccaactg atttatacat gccccaggag gttgtggtca tcggtgggcg 1741 taaggcgatt tccatcgttg gagaaccaac gaccacaagt caaccaaaag ttattgtgcc 1801 aaatccacca gacttgagca gctacgaaga attctacggc aaacgcattg ctgcacccaa 1861 gcaattggct tcacccacta gcctgtgggg agcagcgctc ggagaaggct tcaattgtca 1921 ttttttgctc agcctcatga agacactcaa tcagcaggat cgtgtcaatt gctcgaatgt 1981 gtgcaagttg tggaacttgg tctcgcgtga ttctgatgta tggaaatcag tatctctgcg 2041 cgatacaaag gtcaacaatt ggccagcttt ggtgcgcgag atggcacgca actgcacacg 2101 tgaactggac atgatgggtg cgattatacc caatactggg accctcatcg ccggtgacat 2161 gcgtgtgcta acagatatgc gcacggtgcg taccaatcat acgaaagccg actttctgca 2221 ccagatattc agtggcttgc cccaacttga gaagctgatc ggcacatgcg tcagctcggg 2281 cctcatcatg accgacattg ataagatgga gaacctgaac gagctgcgca ttcgaatgac 2341 cgataccaag gcatcgatca ccggtctgcc ccacgtgggc aagctgacgc atctgcgtgt 2401 cctgagtctg cgcggcgtca agaatttggg taacttgctg tttctaaagg agttgcccaa 2461 tctggagact ctgaacctgg gctactgcca gagcatgcac cgtctacaac tgggcaacga 2521 ggtgctgccg acactcacaa aattgcagag attccgctta gaaacagacc cgcgtaagaa 2581 gacctcgttc ccaatcgacg agatcatgaa gggactcgcc catgctggtg gcgtgcgtcg 2641 cctggagctg gtcaacgtgg atgtggactg taaatttagc caattgctgt ccaactgcaa 2701 tacggtggag gagctgctgc tgatacccaa atgtcagacc aacacggccg tcatgatccg 2761 ctccgtaatg ggaatcagtc gtaatggatc tcagttaaag caatttaagc ttgtgcttat 2821 cacccagctg cttaccgcaa cgggcgccat gttgcgcaac cccgatgtgc ccatggtacc 2881 cgtaatccgt cctatacccg gtattctgct cggcgatcgc ttgaacagct gctccaagga 2941 atgtcaagag cagcagcatg acaggtgtgt ggctggattg ccctttgagc gcctaaagat 3001 cataatgtcg gagttgatgc cgaattcctc accgtcggtg gtcaccatgg ccatgatgga 3061 cacacccaca atccaacttg ggcgtctgcc acccgatgct acgcccccaa acttttgaaa 3121 cacacaaaaa cccacactac ccctacccct acccccacca accaaaccaa ctgaatgcac 3181 ctgtaaaaga gaaagtcaag actgagtctt cgagagcgat cacaaaaatt ttaattcacg 3241 gactaacaca aattaaaaca ctaggacaag aagaagaaga agtattacgg tcggctctat 3301 tttatgtttt cgtatttcat gtgacgtagc tgcaaagtgg ctatcaatgg aaattatcta 3361 ttaattatct aatattaatt tgacttatgc attatcctaa ctactgttaa ctacatttaa 3421 cttaggcgcg ttttaaacgc tgcaccaacg tgaagagtca actgatgacc acacaacaaa 3481 acacacaaca cacaccgaag aaagaaagaa ggaaagatct gaactcgtat tcgtttagtt 3541 tctaattatc tgaatgtgta gattcatatg tataagtatt acatactgtt tcaatgtaat 3601 gcatcgactt aatgtgtata tagtactcgt actcgtacta acaatacaac tacactaaga 3661 gagttgtttg cccaaagcca gccaactgaa tagatattat ttttgttttt tttttttttt 3721 catttaaaca aaaatcatta tcaatattag cgcatcaata ggtagctctt gagagcatct 3781 tgaattgatg gcgaattata tttaagttca ctgaactgaa agataatcaa aaaaagggct 3841 tgggcattcc aaaggaaacc taagccaaac tgtggaagag ttgtttagtt tcactaggcc 3901 cgaggcaaac aataaactat tctcgtgtat agctattgat tttgtagtgt aaatattatc 3961 aaggcaagca ttttcacagc ccacagtccc actctggaaa atgagtttgt tttgtgtact 4021 gtggaggact gactggggct ggcctttgtg tatattacta ttaaaatctg tgtgactttc 4081 tccaaa