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LOCUS XM_022364309 4668 bp mRNA linear INV 14-MAY-2021 variant X1, mRNA. ACCESSION XM_022364309 VERSION XM_022364309.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022364309.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4668 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..4668 /gene="LOC111072436" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns" /db_xref="GeneID:111072436" CDS 101..3700 /gene="LOC111072436" /codon_start=1 /product="mucin-5AC isoform X1" /protein_id="XP_022220001.2" /db_xref="GeneID:111072436" /translation="MSSPDEPGPSNGRKSRSKRRDKSVSRSSNSSSGSNFGRHSSNVV NGGSLRDRLLVANAMATDETNSMVNGNDKNQRKKKKKKSSRRKSQTGLKGYSGRNPSL SYLQNEISDDSDEDTRSPAEIRALCTSGLRVFPREQQTESTADSAVQAAAAAATTPDA PADPASPDTDTPTSSQMSSSPSPFSRTEQTKTTIQLPTATEPSHPSIQLTTTTTTPNT GISTSTIPATSSCTNLMTPVSSASPVTTLQSPTTPPSPTFSPTASANNNNSNHSSENI SNHSSVASITSEPEPESRTTTTATASQQTATDLDKKDEVMIPVTDSSQLSRKRPKSRM GIKTNDNNVENKAKVSAASIPPSKKKKKNQTPCVFIPRKLICGDDPLPDPLPEVAPRR KSIYSDAAKKPKPNLSDELYRLPFKFGWKREVVTPSPLSNTSNHTIYTSPCGKRCRQI SEIVPLLTNELTIEHFIFGTHLLGAGSEFETSRQALSREMHYAALKERRKSLAADKST ASATIKVERKRRQTMGAESYPKEASASAPFGKRRKSINPAESVTEPSKPMAVESTKPL AGEVAALVTGKRVPKPKVPKGASPPTEGWTSTMAVKGNARLLAAASNGNARTAGSSNA SGSSNAAPVSHAKRATCGSCLKLIKGSVCQSCVRSSAREEGPNAGRIMDEYEELEEDE EESEESYQAGTVSNGLKVTKMIEPPGEMPPAELFSTDKSPVTTPTDLYMPQEVVVIGG RKAISIVGEPTTTSQPKVIVPNPPDLSSYEEFYGKRIAAPKQLASPTSLWGAALGEGF NCHFLLSLMKTLNQQDRVNCSNVCKLWNLVSRDSDVWKSVSLRDTKVNNWPALVREMA RNCTRELDMMGAIIPNTGTLIAGDMRVLTDMRTVRTNHTKADFLHQIFSGLPQLEKLI GTCVSSGLIMTDIDKMENLNELRIRMTDTKASITGLPHVGKLTHLRVLSLRGVKNLGN LLFLKELPNLETLNLGYCQSMHRLQLGNEVLPTLTKLQRFRLETDPRKKTSFPIDEIM KGLAHAGGVRRLELVNVDVDCKFSQLLSNCNTVEELLLIPKCQTNTAVMIRSVMGISR NGSQLKQFKLVLITQLLTATGAMLRNPDVPMVPVIRPIPGILLGDRLNSCSKECQEQQ HDRCVAGLPFERLKIIMSELMPNSSPSVVTMAMMDTPTIQLGRLPPDATPPNF" misc_feature 1334..1525 /gene="LOC111072436" /note="MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to...; Region: MBD; cl00110" /db_xref="CDD:469618" misc_feature order(1367..1369,1373..1375,1379..1381,1400..1402, 1406..1408,1433..1435,1442..1444,1454..1456) /gene="LOC111072436" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238069" misc_feature <2528..2617 /gene="LOC111072436" /note="Region: F-box-like; pfam12937" /db_xref="CDD:463757" misc_feature <2810..>3073 /gene="LOC111072436" /note="Leucine-rich repeat (LRR) protein [Transcription]; Region: LRR; COG4886" /db_xref="CDD:443914" ORIGIN 1 tactgtgtac ggtgtgccgt gactttgtcc gccgcagaaa gtggttaatt ttggttaaaa 61 tagctcaagt gttggctcaa ttttgtgtaa ttcatcagat atgagctctc ccgatgaacc 121 tggcccttca aatggacgta agtcccgatc gaagcggcgg gataagtccg tgtcccgaag 181 cagtaattcc agtagtgggt caaactttgg tcgacatagt agtaacgtcg tcaacggggg 241 aagcttgaga gaccgattgc tggtggctaa cgccatggcc actgatgaaa caaacagcat 301 ggtaaatgga aacgataaaa accagagaaa gaagaagaag aagaagtcaa gtcgacgcaa 361 gtcacagaca ggattgaagg gatattccgg aagaaatcct tccctctcgt atttacagaa 421 cgaaatctcc gatgactccg atgaagatac gcggtcgcca gctgaaatca gggcgctttg 481 cacgagtggt ctgagggtat tcccccgtga acaacagaca gaatcaacgg cagactcagc 541 agtacaggcc gctgctgctg ctgctactac tcctgatgct ccggctgatc cggctagccc 601 ggacacggac actccgactt cttcacagat gtcatcatca ccatcaccat tctcccgcac 661 ggagcagacg aagacaacta tccaactccc gaccgcaaca gaaccatccc atccttccat 721 ccaactaaca acaacaacta ccactccgaa cactggaatt tcaactagca ccatcccagc 781 aacgtcctcc tgtactaatt taatgactcc agtatcgtcc gcatcaccag taacaaccct 841 tcagtctccg acaactcctc ccagcccaac attttcaccg acggcatcag ccaacaacaa 901 caacagtaac cactcttcag agaacatctc aaaccactct tctgtggctt caatcacaag 961 cgaaccagaa ccagaatcgc gaacaacaac tacagcaact gcaagtcagc aaacagcaac 1021 agatttagac aagaaggatg aggtgatgat tcctgtcact gattccagcc aattgtcccg 1081 aaaacgccca aagtcgagaa tgggaattaa gacaaacgac aacaacgtgg aaaacaaggc 1141 gaaggtgtca gctgcgtcga ttcctccttc aaagaaaaag aagaagaatc agactccttg 1201 tgttttcata cccagaaaat taatttgtgg tgatgatccg ttgcccgatc cattgccaga 1261 ggtggcccct cgacgcaaaa gtatttactc ggatgcggcc aagaagccga agccaaattt 1321 gtccgacgag ctctatcgtc tgccgtttaa atttggctgg aagcgtgagg tggtgactcc 1381 cagcccactg tccaacactt cgaatcacac aatctacaca tcgccctgcg gcaagaggtg 1441 ccgacaaatc agtgagattg taccattgct gacgaatgaa ctcaccatcg agcactttat 1501 ctttgggacg catctcctgg gtgccggatc cgagttcgag acgagccgtc aggccttgag 1561 cagggagatg cactatgccg ctttaaagga gcgccgcaaa tcgctggcgg ccgacaaatc 1621 gacagcgtcg gccacaatta aggtggagcg caaacgtcgt caaacgatgg gagccgaatc 1681 ctatccgaag gaggcatctg cctctgcgcc atttggcaaa cgtcgcaaat ccatcaatcc 1741 agcggaatcg gtcaccgaac ccagtaagcc gatggcagtc gaatccacga aacctctggc 1801 aggcgaagtg gcggctcttg taacaggcaa acgcgtaccc aagccgaagg tgccaaaggg 1861 cgccagccct cccactgagg gttggacctc caccatggcc gtcaagggaa atgcgcgtct 1921 cctggctgcc gccagcaatg gcaacgccag aactgctgga tcttcgaatg caagcggcag 1981 ctcaaatgcc gccccggtga gccatgccaa gcgcgccacc tgtggatcct gcctaaagct 2041 aatcaagggt agcgtttgcc agagctgcgt gcggtcgtcg gcgagggagg agggaccaaa 2101 tgctggccgc ataatggatg aatatgaaga actggaggag gacgaggagg aaagcgagga 2161 gagctaccag gcgggcactg tgagcaatgg gctaaaagtc acaaaaatga tcgagccgcc 2221 cggcgagatg ccaccagcgg agctattcag cacagacaaa tccccagtga caacgccaac 2281 tgatttatac atgccccagg aggttgtggt catcggtggg cgtaaggcga tttccatcgt 2341 tggagaacca acgaccacaa gtcaaccaaa agttattgtg ccaaatccac cagacttgag 2401 cagctacgaa gaattctacg gcaaacgcat tgctgcaccc aagcaattgg cttcacccac 2461 tagcctgtgg ggagcagcgc tcggagaagg cttcaattgt cattttttgc tcagcctcat 2521 gaagacactc aatcagcagg atcgtgtcaa ttgctcgaat gtgtgcaagt tgtggaactt 2581 ggtctcgcgt gattctgatg tatggaaatc agtatctctg cgcgatacaa aggtcaacaa 2641 ttggccagct ttggtgcgcg agatggcacg caactgcaca cgtgaactgg acatgatggg 2701 tgcgattata cccaatactg ggaccctcat cgccggtgac atgcgtgtgc taacagatat 2761 gcgcacggtg cgtaccaatc atacgaaagc cgactttctg caccagatat tcagtggctt 2821 gccccaactt gagaagctga tcggcacatg cgtcagctcg ggcctcatca tgaccgacat 2881 tgataagatg gagaacctga acgagctgcg cattcgaatg accgatacca aggcatcgat 2941 caccggtctg ccccacgtgg gcaagctgac gcatctgcgt gtcctgagtc tgcgcggcgt 3001 caagaatttg ggtaacttgc tgtttctaaa ggagttgccc aatctggaga ctctgaacct 3061 gggctactgc cagagcatgc accgtctaca actgggcaac gaggtgctgc cgacactcac 3121 aaaattgcag agattccgct tagaaacaga cccgcgtaag aagacctcgt tcccaatcga 3181 cgagatcatg aagggactcg cccatgctgg tggcgtgcgt cgcctggagc tggtcaacgt 3241 ggatgtggac tgtaaattta gccaattgct gtccaactgc aatacggtgg aggagctgct 3301 gctgataccc aaatgtcaga ccaacacggc cgtcatgatc cgctccgtaa tgggaatcag 3361 tcgtaatgga tctcagttaa agcaatttaa gcttgtgctt atcacccagc tgcttaccgc 3421 aacgggcgcc atgttgcgca accccgatgt gcccatggta cccgtaatcc gtcctatacc 3481 cggtattctg ctcggcgatc gcttgaacag ctgctccaag gaatgtcaag agcagcagca 3541 tgacaggtgt gtggctggat tgccctttga gcgcctaaag atcataatgt cggagttgat 3601 gccgaattcc tcaccgtcgg tggtcaccat ggccatgatg gacacaccca caatccaact 3661 tgggcgtctg ccacccgatg ctacgccccc aaacttttga aacacacaaa aacccacact 3721 acccctaccc ctacccccac caaccaaacc aactgaatgc acctgtaaaa gagaaagtca 3781 agactgagtc ttcgagagcg atcacaaaaa ttttaattca cggactaaca caaattaaaa 3841 cactaggaca agaagaagaa gaagtattac ggtcggctct attttatgtt ttcgtatttc 3901 atgtgacgta gctgcaaagt ggctatcaat ggaaattatc tattaattat ctaatattaa 3961 tttgacttat gcattatcct aactactgtt aactacattt aacttaggcg cgttttaaac 4021 gctgcaccaa cgtgaagagt caactgatga ccacacaaca aaacacacaa cacacaccga 4081 agaaagaaag aaggaaagat ctgaactcgt attcgtttag tttctaatta tctgaatgtg 4141 tagattcata tgtataagta ttacatactg tttcaatgta atgcatcgac ttaatgtgta 4201 tatagtactc gtactcgtac taacaataca actacactaa gagagttgtt tgcccaaagc 4261 cagccaactg aatagatatt atttttgttt tttttttttt ttcatttaaa caaaaatcat 4321 tatcaatatt agcgcatcaa taggtagctc ttgagagcat cttgaattga tggcgaatta 4381 tatttaagtt cactgaactg aaagataatc aaaaaaaggg cttgggcatt ccaaaggaaa 4441 cctaagccaa actgtggaag agttgtttag tttcactagg cccgaggcaa acaataaact 4501 attctcgtgt atagctattg attttgtagt gtaaatatta tcaaggcaag cattttcaca 4561 gcccacagtc ccactctgga aaatgagttt gttttgtgta ctgtggagga ctgactgggg 4621 ctggcctttg tgtatattac tattaaaatc tgtgtgactt tctccaaa