PREDICTED: Drosophila obscura transcription factor grauzone
LOCUS XM_022364274 1641 bp mRNA linear INV 14-MAY-2021
(LOC111072423), mRNA.
ACCESSION XM_022364274
VERSION XM_022364274.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022364274.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1641
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..1641
/gene="LOC111072423"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111072423"
CDS 74..1615
/gene="LOC111072423"
/codon_start=1
/product="transcription factor grauzone"
/protein_id="XP_022219966.2"
/db_xref="GeneID:111072423"
/translation="MICRLCLEDAQHSVPIFDGVDSPMQPSLSNLAELIEKHLQLVLM
PNDAVSKCLCTKCWQQLADFEQFCAMVMKKQLGLPLKLEPFSDDDEDTKAQILCEPEI
DVSPSADTNEYNEIDIDTKPLPSSGRTTTRRRVRLPSPIRRSMRPRAAQKARPLKAKP
KRHLESELDIAGSSNSGEMDSYIAAHGRLECCQCGGDSQYHNFAELKRHYRNEHQTAG
YVMCCQRRYKKRALYVDHLRMHNDPDYFRCKICAKQLVSRISYDVHMLRFHSNEDELS
FACDKCSKRFSKQFLLTIHARVHQQERTEKCKHCDRSFRTAVDLRLHMRRTHDPTFVP
FICDSCGSKFKTKQNLLVHKRTVHREGSQLPEVQCQECQTWLSDENSLRKHMYMHRDA
ASTREWKCGQCGLVKDSRAKLAAHIRYHHPKEYHKCTHCGKEFKSSRGLEEHTATHTG
QDLYECAFCERTFKNSGNMHKHRRQMHAAQVAALQQQKKVRPSKRKEKGSLLLLDEGD
NEIND"
misc_feature 77..298
/gene="LOC111072423"
/note="Zinc-finger associated domain (zf-AD); Region:
zf-AD; pfam07776"
/db_xref="CDD:462262"
misc_feature 740..793
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 815..880
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 908..970
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(923..925,929..931,935..937,941..946,953..958,
965..967,1007..1009,1013..1015,1025..1030,1037..1042,
1052..1054,1097..1099,1103..1105,1109..1111,1115..1120,
1127..1132,1139..1141)
/gene="LOC111072423"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 989..>1174
/gene="LOC111072423"
/note="N-terminal domain of Oryza sativa transcription
factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
cd20908"
/db_xref="CDD:411020"
misc_feature 992..1057
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 992..1057
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1007..1009,1025..1027,1046..1048,1052..1054,
1079..1081,1100..1102)
/gene="LOC111072423"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:411020"
misc_feature 1082..1147
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 1082..1141
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1178..1240
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1271..1333
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1286..1288,1292..1294,1298..1300,1304..1309,
1316..1321,1328..1330,1370..1372,1376..1378,1388..1393,
1400..1405,1412..1414,1454..1456,1460..1462,1466..1468,
1472..1477,1484..1489)
/gene="LOC111072423"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1355..1417
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1439..1495
/gene="LOC111072423"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
1 gatagtgccc tcgatggttt gacacctcta ttgccttaat ttttaattaa atttttgctt
61 ccacatttat gaaatgatat gccgtctgtg tctcgaagat gcccagcaca gtgtccccat
121 ctttgacggc gtcgacagcc caatgcagcc atcgctgtcc aacctggccg aattgataga
181 gaaacacctg caattggttc tgatgcccaa cgatgctgta tccaagtgcc tgtgcaccaa
241 atgctggcag cagctggccg actttgaaca gttctgcgcc atggtgatga agaaacagct
301 ggggctgccg ctgaagctgg agcctttctc ggatgacgac gaggacacca aggcacagat
361 attgtgcgag ccagagattg atgtcagccc ctcggccgat acaaacgaat acaatgagat
421 cgacatagac acgaaaccac tgccaagcag tggcaggact acgaccaggc gaagggtacg
481 ccttccgtcg cccatacgcc gcagcatgcg tccccgggcc gcccagaagg ccagaccatt
541 gaaagcgaaa ccgaagcgtc accttgagtc ggagctggac atcgctggga gtagcaacag
601 cggcgaaatg gatagctaca ttgcggcaca cggtcgcctg gaatgctgtc agtgcggcgg
661 cgattcccag tatcacaact ttgccgagct caagcgacat tatcggaatg agcatcagac
721 ggccggatat gtgatgtgct gtcagaggcg ctacaagaag cgtgctctct acgtggacca
781 tctgcgaatg cacaacgatc cggattactt tagatgtaag atttgtgcga agcagctggt
841 cagcagaatc agctacgacg tgcacatgct gcggtttcat tccaacgagg acgagctgag
901 cttcgcctgc gacaagtgtt cgaagcggtt ttcaaagcaa ttcctgctga ccatccacgc
961 ccgtgtccac caacaggagc gcaccgaaaa gtgcaagcac tgcgacagat cattccgcac
1021 tgctgtcgat ttgcgcctgc acatgcgtcg cactcacgat cccacctttg tgcccttcat
1081 ctgcgactcc tgcggctcca agttcaagac gaagcaaaat ctcttggtac acaagcgcac
1141 cgtgcatcgg gagggctcac agctgccgga ggtgcagtgt caggaatgcc agacctggct
1201 gagcgacgag aacagcctgc gcaagcacat gtacatgcat cgcgatgcgg cgtccacgcg
1261 cgaatggaag tgtggacagt gcggcctagt gaaggactcg cgcgcaaagc ttgctgccca
1321 cattcggtat catcatccga aggagtatca caagtgcaca cactgcggga aggagttcaa
1381 gagcagtcgt ggcctcgagg agcacacggc cacacacacc ggccaggacc tgtacgagtg
1441 tgccttctgt gagcgcacct tcaagaattc gggcaacatg cacaagcacc gccggcagat
1501 gcatgccgcc caggttgccg cactgcagca gcagaaaaag gtacgtccga gcaagcggaa
1561 ggagaagggc tccctgctgc tcttggatga gggggataac gaaataaacg actgatcgat
1621 tccaaaataa actttacttt c