PREDICTED: Drosophila obscura integrin beta-PS (LOC111072392),
LOCUS XM_022364233 3589 bp mRNA linear INV 14-MAY-2021
transcript variant X4, mRNA.
ACCESSION XM_022364233
VERSION XM_022364233.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022364233.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3589
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3589
/gene="LOC111072392"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 15 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 13 samples with support for all annotated
introns"
/db_xref="GeneID:111072392"
CDS 247..2832
/gene="LOC111072392"
/codon_start=1
/product="integrin beta-PS isoform X1"
/protein_id="XP_022219925.1"
/db_xref="GeneID:111072392"
/translation="MAMIMNVAATKKTCHLAVLSVLVLALMHASLVQSQLSGKLVQNP
CSGKDKCHTCIQTQSCAWCMQPNFEGRSRCFQHTSPDVCLEQFVWNPDTSEQILINKN
LTLAGESQAYGSAGGFGGGAAGGGGGGQYISGGSSYHQSSSSSSSSSSASSYGSQYSG
WSASSGEIVQIKPQSVNLKLRINQVHNLKVSYTQAEGYPVDLYYLMDLSKSMEDDKEK
LSALGDKLSETMKSITSNFRLGFGSFVDKVLMPYVSTIPKKLEHPCDNCKAPYGYRNH
MPLSNNTESFSNEVKDAAVSGNLDAPEGGFDAIMQAIACRQQVGWREQARRLLVFSTD
AGFHYAGDGKLGGVIAPNDGECHLDLQGMYTHSVIQDYPSISQINQKVKENAINIIFA
VTNSQYTVYEKLAAHVQGSSAAILSNDSSNVVDLVQKEYNKISSSVEMKDNATGDVKI
TYFSSCLTNGPEIQTSKCDNLTVGKQVSFTAQIQVLKCPEDPRDWNQVIQIYPVGINE
SMVIKLEMLCSCPCEHPGSIGYEALSPHCNNYGTYMCGICDCGEHHFGNTCECSVSDM
NSTINNDASCRADNTTNVDCSGRGNCVCGFCECFKRPNTEEVITGKFCECENFSCERN
KNQLCSGPDHGTCDCGRCVCKPGWTGSSCACQASNDTCMPPGGGELCSGHGTCECGVC
KCTANEQGRYSGRHCEKCPTCSGRCQELKDCVQCQMYHTGVLKNVDDCARNCTAFTPV
GVEKVTIDEHKDEQMCTFFDEDDCKFMFKYSEQGELVVHAQEEKECPPKVFMLGIVLG
VIAAIVLVGLAILLLWKLLTTIHDRREFARFEKESMNAKWNAGENPIYKQATSTFKNP
MYAGK"
misc_feature 394..1806
/gene="LOC111072392"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cl00057"
/db_xref="CDD:469594"
misc_feature 2365..2616
/gene="LOC111072392"
/note="Integrin beta tail domain; Region: Integrin_B_tail;
pfam07965"
/db_xref="CDD:462325"
misc_feature 2698..2820
/gene="LOC111072392"
/note="Integrin beta cytoplasmic domain; Region:
Integrin_b_cyt; pfam08725"
/db_xref="CDD:462580"
ORIGIN
1 tggaaatata ttgttcgaaa tccaattgaa aacgcatcaa acattgcttt caagtgctgc
61 cagcggatag agtgcgagtg aaatatctat taagtagtgg aattacctgc acaaaagtga
121 cagagaaagc ggacagcgac caagtgagag gtgcgacaga gacagagagc cgatcaacgg
181 ctaacaataa gtgcagcagc agaccacaca gagaaagaga gagagagaaa cagagacaga
241 gagacaatgg cgatgataat gaatgtcgca gctacaaaaa aaacctgcca tttggcggtg
301 ctatcggtcc ttgttctggc cctgatgcac gcctccctgg tgcagtccca gctgtcgggg
361 aagctggtcc agaatccgtg cagcggcaag gacaagtgcc acacgtgcat ccagacccag
421 agctgtgcgt ggtgcatgca gccaaacttt gaggggcgat cgcgctgttt tcagcacacc
481 tcgccggatg tctgtctcga gcagttcgtc tggaatcccg acacctctga gcaaattctc
541 atcaacaaga acctgacgct agctggcgag agtcaagcct atggctcagc cggtggcttt
601 ggtggtggtg ctgccggcgg cggcggcggt ggtcaataca tctctggcgg cagctcttat
661 catcagagct cctcctcctc cagctccagc tccagcgcca gttcctatgg ctcccagtac
721 tctggttggt cggctagttc cggcgagatt gtccaaatca aaccacagtc tgtgaacctg
781 aagctgcgca tcaatcaagt ccacaacctg aaggtgagct acacccaggc cgagggctat
841 cccgtggatc tctactactt gatggacctt tccaagtcca tggaggatga caaagagaag
901 ctgtccgccc tgggcgacaa actgtcggag accatgaaga gcatcacgtc gaatttccgc
961 ctgggtttcg gttcgtttgt ggacaaggtg ctcatgccct atgtgtccac cattcccaaa
1021 aaactcgagc atccctgcga taactgcaag gctccctatg gttaccgcaa tcacatgcca
1081 ctcagcaata acaccgaaag cttctctaac gaggtgaaag atgcggctgt ctctggtaat
1141 ctcgatgcgc ccgagggcgg ttttgatgcc attatgcagg ccattgcctg ccgtcagcag
1201 gtgggatggc gtgagcaggc ccgtcgcctg ctcgtcttct ccacggacgc tggctttcat
1261 tatgcgggcg atggcaaatt gggcggcgtg atagcgccca acgatggcga atgtcatctg
1321 gatctgcagg gcatgtatac gcattcggtg atacaggact atccgagcat ctcgcaaatt
1381 aaccaaaagg tcaaggagaa tgccatcaac attatctttg cggtgaccaa ctcacagtat
1441 accgtgtacg agaaactggc cgctcacgtt cagggctcct cggcggccat cctatcgaat
1501 gattcgtcca atgtggtcga tctcgtgcag aaggagtaca ataaaatctc gtcgtcggta
1561 gagatgaagg acaatgctac gggagacgtg aagattacat atttctcgtc ctgtctgaca
1621 aacggacccg agatccagac atccaaatgc gataacctga cggtgggcaa gcaggtgagc
1681 ttcacggccc agattcaggt gttgaagtgc ccggaggatc cacgtgactg gaatcaggtc
1741 atccagatct atccggttgg catcaacgag agcatggtga tcaaactgga gatgctgtgc
1801 tcctgcccct gcgaacatcc cggctccatt gggtatgagg cgctgtcgcc gcactgcaac
1861 aactacggca cctacatgtg cggcatctgt gactgtggcg agcatcattt tggtaacacc
1921 tgcgagtgct ccgtatcgga catgaactcg acgatcaaca acgatgccag ttgtagggcg
1981 gacaacacca ccaatgtgga ctgcagcggg cgcggcaatt gtgtgtgcgg cttttgtgag
2041 tgcttcaagc ggcccaatac ggaggaggtg atcaccggca agttctgcga gtgcgagaac
2101 tttagctgtg agcgtaacaa gaatcagctg tgctctggac ccgatcacgg cacctgcgac
2161 tgtggccgtt gtgtctgcaa gcccggctgg acgggcagta gctgtgcctg ccaggcctcc
2221 aacgacacct gtatgccgcc gggcggtggc gagctctgct ccggtcacgg cacgtgcgag
2281 tgtggcgtct gcaagtgtac ggccaatgaa caaggccgtt actctggccg ccactgcgaa
2341 aagtgcccga catgctcggg ccgctgtcag gagctaaagg attgcgtaca gtgccagatg
2401 tatcacaccg gagtgctgaa gaacgtggat gactgtgccc gcaactgtac ggccttcact
2461 ccggtgggcg tcgagaaggt gaccattgat gagcacaagg atgagcagat gtgcacattt
2521 ttcgacgaag atgactgcaa gttcatgttc aagtacagcg aacagggcga gctggtggtc
2581 catgcccagg aggagaagga gtgcccgccc aaggtcttta tgctcggcat cgtgctgggc
2641 gtcatcgccg ccattgtgct cgtgggcctg gccattctgc tgctctggaa gctcctgacc
2701 accattcacg atcgccgtga atttgcccgc ttcgagaagg agagcatgaa tgccaaatgg
2761 aatgcgggcg agaatcccat ctacaagcag gccacctcca ccttcaagaa tcccatgtat
2821 gcgggcaaat aatcaattcg gctggatcca ctctccgcca tctaactaaa tattagtaac
2881 aaattttgtg tcatccatgg atggattgtt tgtgcctggg aagagacaca agagacctgt
2941 gcctgtgtgc ctgtgtctct tccccaatta aaatctaaat ctaaatcaac gaaagctgcg
3001 cccgatagtt tcctgttgaa gtcaactgcc actgaaacgc gttctaaact aagtcaaatt
3061 tatatataca cagatataga gatatatata tatataccgc cccgccccca gacaccaaaa
3121 cacccgaaaa cacttcgagg gcagccttca tatacaatgc gtatacttaa cgagcaaacg
3181 atgtgtgcga gtgccttgct ataaaatgta tttagacttg taaaatgcat atatttgtat
3241 acccatacct atatcgtata ttgatagaga gagcttccat ctacagagag ccaacagaaa
3301 cagacagcac aaacaaaaca gccaagaaaa ttaactacga aacgattatt attagggata
3361 tatatgattt aatgtgtgac atcctgtgtt cagccaaccg caatccacaa ccacccccac
3421 cccccacacc atcaattgtc caaacagcac atcaactttg tttgtatttt atttctaatt
3481 cttgtttctt tataattttg tattccattt ataatttttg atattctatt gatttatttt
3541 cgaacacttg tgtagtttta aagcgcaatg tatttttgta cgttttatt