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LOCUS XM_022364233 3589 bp mRNA linear INV 14-MAY-2021 transcript variant X4, mRNA. ACCESSION XM_022364233 VERSION XM_022364233.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022364233.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3589 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3589 /gene="LOC111072392" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns" /db_xref="GeneID:111072392" CDS 247..2832 /gene="LOC111072392" /codon_start=1 /product="integrin beta-PS isoform X1" /protein_id="XP_022219925.1" /db_xref="GeneID:111072392" /translation="MAMIMNVAATKKTCHLAVLSVLVLALMHASLVQSQLSGKLVQNP CSGKDKCHTCIQTQSCAWCMQPNFEGRSRCFQHTSPDVCLEQFVWNPDTSEQILINKN LTLAGESQAYGSAGGFGGGAAGGGGGGQYISGGSSYHQSSSSSSSSSSASSYGSQYSG WSASSGEIVQIKPQSVNLKLRINQVHNLKVSYTQAEGYPVDLYYLMDLSKSMEDDKEK LSALGDKLSETMKSITSNFRLGFGSFVDKVLMPYVSTIPKKLEHPCDNCKAPYGYRNH MPLSNNTESFSNEVKDAAVSGNLDAPEGGFDAIMQAIACRQQVGWREQARRLLVFSTD AGFHYAGDGKLGGVIAPNDGECHLDLQGMYTHSVIQDYPSISQINQKVKENAINIIFA VTNSQYTVYEKLAAHVQGSSAAILSNDSSNVVDLVQKEYNKISSSVEMKDNATGDVKI TYFSSCLTNGPEIQTSKCDNLTVGKQVSFTAQIQVLKCPEDPRDWNQVIQIYPVGINE SMVIKLEMLCSCPCEHPGSIGYEALSPHCNNYGTYMCGICDCGEHHFGNTCECSVSDM NSTINNDASCRADNTTNVDCSGRGNCVCGFCECFKRPNTEEVITGKFCECENFSCERN KNQLCSGPDHGTCDCGRCVCKPGWTGSSCACQASNDTCMPPGGGELCSGHGTCECGVC KCTANEQGRYSGRHCEKCPTCSGRCQELKDCVQCQMYHTGVLKNVDDCARNCTAFTPV GVEKVTIDEHKDEQMCTFFDEDDCKFMFKYSEQGELVVHAQEEKECPPKVFMLGIVLG VIAAIVLVGLAILLLWKLLTTIHDRREFARFEKESMNAKWNAGENPIYKQATSTFKNP MYAGK" misc_feature 394..1806 /gene="LOC111072392" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057" /db_xref="CDD:469594" misc_feature 2365..2616 /gene="LOC111072392" /note="Integrin beta tail domain; Region: Integrin_B_tail; pfam07965" /db_xref="CDD:462325" misc_feature 2698..2820 /gene="LOC111072392" /note="Integrin beta cytoplasmic domain; Region: Integrin_b_cyt; pfam08725" /db_xref="CDD:462580" ORIGIN 1 tggaaatata ttgttcgaaa tccaattgaa aacgcatcaa acattgcttt caagtgctgc 61 cagcggatag agtgcgagtg aaatatctat taagtagtgg aattacctgc acaaaagtga 121 cagagaaagc ggacagcgac caagtgagag gtgcgacaga gacagagagc cgatcaacgg 181 ctaacaataa gtgcagcagc agaccacaca gagaaagaga gagagagaaa cagagacaga 241 gagacaatgg cgatgataat gaatgtcgca gctacaaaaa aaacctgcca tttggcggtg 301 ctatcggtcc ttgttctggc cctgatgcac gcctccctgg tgcagtccca gctgtcgggg 361 aagctggtcc agaatccgtg cagcggcaag gacaagtgcc acacgtgcat ccagacccag 421 agctgtgcgt ggtgcatgca gccaaacttt gaggggcgat cgcgctgttt tcagcacacc 481 tcgccggatg tctgtctcga gcagttcgtc tggaatcccg acacctctga gcaaattctc 541 atcaacaaga acctgacgct agctggcgag agtcaagcct atggctcagc cggtggcttt 601 ggtggtggtg ctgccggcgg cggcggcggt ggtcaataca tctctggcgg cagctcttat 661 catcagagct cctcctcctc cagctccagc tccagcgcca gttcctatgg ctcccagtac 721 tctggttggt cggctagttc cggcgagatt gtccaaatca aaccacagtc tgtgaacctg 781 aagctgcgca tcaatcaagt ccacaacctg aaggtgagct acacccaggc cgagggctat 841 cccgtggatc tctactactt gatggacctt tccaagtcca tggaggatga caaagagaag 901 ctgtccgccc tgggcgacaa actgtcggag accatgaaga gcatcacgtc gaatttccgc 961 ctgggtttcg gttcgtttgt ggacaaggtg ctcatgccct atgtgtccac cattcccaaa 1021 aaactcgagc atccctgcga taactgcaag gctccctatg gttaccgcaa tcacatgcca 1081 ctcagcaata acaccgaaag cttctctaac gaggtgaaag atgcggctgt ctctggtaat 1141 ctcgatgcgc ccgagggcgg ttttgatgcc attatgcagg ccattgcctg ccgtcagcag 1201 gtgggatggc gtgagcaggc ccgtcgcctg ctcgtcttct ccacggacgc tggctttcat 1261 tatgcgggcg atggcaaatt gggcggcgtg atagcgccca acgatggcga atgtcatctg 1321 gatctgcagg gcatgtatac gcattcggtg atacaggact atccgagcat ctcgcaaatt 1381 aaccaaaagg tcaaggagaa tgccatcaac attatctttg cggtgaccaa ctcacagtat 1441 accgtgtacg agaaactggc cgctcacgtt cagggctcct cggcggccat cctatcgaat 1501 gattcgtcca atgtggtcga tctcgtgcag aaggagtaca ataaaatctc gtcgtcggta 1561 gagatgaagg acaatgctac gggagacgtg aagattacat atttctcgtc ctgtctgaca 1621 aacggacccg agatccagac atccaaatgc gataacctga cggtgggcaa gcaggtgagc 1681 ttcacggccc agattcaggt gttgaagtgc ccggaggatc cacgtgactg gaatcaggtc 1741 atccagatct atccggttgg catcaacgag agcatggtga tcaaactgga gatgctgtgc 1801 tcctgcccct gcgaacatcc cggctccatt gggtatgagg cgctgtcgcc gcactgcaac 1861 aactacggca cctacatgtg cggcatctgt gactgtggcg agcatcattt tggtaacacc 1921 tgcgagtgct ccgtatcgga catgaactcg acgatcaaca acgatgccag ttgtagggcg 1981 gacaacacca ccaatgtgga ctgcagcggg cgcggcaatt gtgtgtgcgg cttttgtgag 2041 tgcttcaagc ggcccaatac ggaggaggtg atcaccggca agttctgcga gtgcgagaac 2101 tttagctgtg agcgtaacaa gaatcagctg tgctctggac ccgatcacgg cacctgcgac 2161 tgtggccgtt gtgtctgcaa gcccggctgg acgggcagta gctgtgcctg ccaggcctcc 2221 aacgacacct gtatgccgcc gggcggtggc gagctctgct ccggtcacgg cacgtgcgag 2281 tgtggcgtct gcaagtgtac ggccaatgaa caaggccgtt actctggccg ccactgcgaa 2341 aagtgcccga catgctcggg ccgctgtcag gagctaaagg attgcgtaca gtgccagatg 2401 tatcacaccg gagtgctgaa gaacgtggat gactgtgccc gcaactgtac ggccttcact 2461 ccggtgggcg tcgagaaggt gaccattgat gagcacaagg atgagcagat gtgcacattt 2521 ttcgacgaag atgactgcaa gttcatgttc aagtacagcg aacagggcga gctggtggtc 2581 catgcccagg aggagaagga gtgcccgccc aaggtcttta tgctcggcat cgtgctgggc 2641 gtcatcgccg ccattgtgct cgtgggcctg gccattctgc tgctctggaa gctcctgacc 2701 accattcacg atcgccgtga atttgcccgc ttcgagaagg agagcatgaa tgccaaatgg 2761 aatgcgggcg agaatcccat ctacaagcag gccacctcca ccttcaagaa tcccatgtat 2821 gcgggcaaat aatcaattcg gctggatcca ctctccgcca tctaactaaa tattagtaac 2881 aaattttgtg tcatccatgg atggattgtt tgtgcctggg aagagacaca agagacctgt 2941 gcctgtgtgc ctgtgtctct tccccaatta aaatctaaat ctaaatcaac gaaagctgcg 3001 cccgatagtt tcctgttgaa gtcaactgcc actgaaacgc gttctaaact aagtcaaatt 3061 tatatataca cagatataga gatatatata tatataccgc cccgccccca gacaccaaaa 3121 cacccgaaaa cacttcgagg gcagccttca tatacaatgc gtatacttaa cgagcaaacg 3181 atgtgtgcga gtgccttgct ataaaatgta tttagacttg taaaatgcat atatttgtat 3241 acccatacct atatcgtata ttgatagaga gagcttccat ctacagagag ccaacagaaa 3301 cagacagcac aaacaaaaca gccaagaaaa ttaactacga aacgattatt attagggata 3361 tatatgattt aatgtgtgac atcctgtgtt cagccaaccg caatccacaa ccacccccac 3421 cccccacacc atcaattgtc caaacagcac atcaactttg tttgtatttt atttctaatt 3481 cttgtttctt tataattttg tattccattt ataatttttg atattctatt gatttatttt 3541 cgaacacttg tgtagtttta aagcgcaatg tatttttgta cgttttatt