PREDICTED: Drosophila obscura integrin beta-PS (LOC111072392),
LOCUS XM_022364232 3560 bp mRNA linear INV 14-MAY-2021
transcript variant X3, mRNA.
ACCESSION XM_022364232
VERSION XM_022364232.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022364232.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3560
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3560
/gene="LOC111072392"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 15 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111072392"
CDS 218..2803
/gene="LOC111072392"
/codon_start=1
/product="integrin beta-PS isoform X1"
/protein_id="XP_022219924.1"
/db_xref="GeneID:111072392"
/translation="MAMIMNVAATKKTCHLAVLSVLVLALMHASLVQSQLSGKLVQNP
CSGKDKCHTCIQTQSCAWCMQPNFEGRSRCFQHTSPDVCLEQFVWNPDTSEQILINKN
LTLAGESQAYGSAGGFGGGAAGGGGGGQYISGGSSYHQSSSSSSSSSSASSYGSQYSG
WSASSGEIVQIKPQSVNLKLRINQVHNLKVSYTQAEGYPVDLYYLMDLSKSMEDDKEK
LSALGDKLSETMKSITSNFRLGFGSFVDKVLMPYVSTIPKKLEHPCDNCKAPYGYRNH
MPLSNNTESFSNEVKDAAVSGNLDAPEGGFDAIMQAIACRQQVGWREQARRLLVFSTD
AGFHYAGDGKLGGVIAPNDGECHLDLQGMYTHSVIQDYPSISQINQKVKENAINIIFA
VTNSQYTVYEKLAAHVQGSSAAILSNDSSNVVDLVQKEYNKISSSVEMKDNATGDVKI
TYFSSCLTNGPEIQTSKCDNLTVGKQVSFTAQIQVLKCPEDPRDWNQVIQIYPVGINE
SMVIKLEMLCSCPCEHPGSIGYEALSPHCNNYGTYMCGICDCGEHHFGNTCECSVSDM
NSTINNDASCRADNTTNVDCSGRGNCVCGFCECFKRPNTEEVITGKFCECENFSCERN
KNQLCSGPDHGTCDCGRCVCKPGWTGSSCACQASNDTCMPPGGGELCSGHGTCECGVC
KCTANEQGRYSGRHCEKCPTCSGRCQELKDCVQCQMYHTGVLKNVDDCARNCTAFTPV
GVEKVTIDEHKDEQMCTFFDEDDCKFMFKYSEQGELVVHAQEEKECPPKVFMLGIVLG
VIAAIVLVGLAILLLWKLLTTIHDRREFARFEKESMNAKWNAGENPIYKQATSTFKNP
MYAGK"
misc_feature 365..1777
/gene="LOC111072392"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cl00057"
/db_xref="CDD:469594"
misc_feature 2336..2587
/gene="LOC111072392"
/note="Integrin beta tail domain; Region: Integrin_B_tail;
pfam07965"
/db_xref="CDD:462325"
misc_feature 2669..2791
/gene="LOC111072392"
/note="Integrin beta cytoplasmic domain; Region:
Integrin_b_cyt; pfam08725"
/db_xref="CDD:462580"
ORIGIN
1 cagtcgacac cgtttttggt gaaaaaatag taatattaat tcttgtttta tttttttgtt
61 gcaaaaacgc tgactagctg cacaaaagtg acagagaaag cggacagcga ccaagtgaga
121 ggtgcgacag agacagagag ccgatcaacg gctaacaata agtgcagcag cagaccacac
181 agagaaagag agagagagaa acagagacag agagacaatg gcgatgataa tgaatgtcgc
241 agctacaaaa aaaacctgcc atttggcggt gctatcggtc cttgttctgg ccctgatgca
301 cgcctccctg gtgcagtccc agctgtcggg gaagctggtc cagaatccgt gcagcggcaa
361 ggacaagtgc cacacgtgca tccagaccca gagctgtgcg tggtgcatgc agccaaactt
421 tgaggggcga tcgcgctgtt ttcagcacac ctcgccggat gtctgtctcg agcagttcgt
481 ctggaatccc gacacctctg agcaaattct catcaacaag aacctgacgc tagctggcga
541 gagtcaagcc tatggctcag ccggtggctt tggtggtggt gctgccggcg gcggcggcgg
601 tggtcaatac atctctggcg gcagctctta tcatcagagc tcctcctcct ccagctccag
661 ctccagcgcc agttcctatg gctcccagta ctctggttgg tcggctagtt ccggcgagat
721 tgtccaaatc aaaccacagt ctgtgaacct gaagctgcgc atcaatcaag tccacaacct
781 gaaggtgagc tacacccagg ccgagggcta tcccgtggat ctctactact tgatggacct
841 ttccaagtcc atggaggatg acaaagagaa gctgtccgcc ctgggcgaca aactgtcgga
901 gaccatgaag agcatcacgt cgaatttccg cctgggtttc ggttcgtttg tggacaaggt
961 gctcatgccc tatgtgtcca ccattcccaa aaaactcgag catccctgcg ataactgcaa
1021 ggctccctat ggttaccgca atcacatgcc actcagcaat aacaccgaaa gcttctctaa
1081 cgaggtgaaa gatgcggctg tctctggtaa tctcgatgcg cccgagggcg gttttgatgc
1141 cattatgcag gccattgcct gccgtcagca ggtgggatgg cgtgagcagg cccgtcgcct
1201 gctcgtcttc tccacggacg ctggctttca ttatgcgggc gatggcaaat tgggcggcgt
1261 gatagcgccc aacgatggcg aatgtcatct ggatctgcag ggcatgtata cgcattcggt
1321 gatacaggac tatccgagca tctcgcaaat taaccaaaag gtcaaggaga atgccatcaa
1381 cattatcttt gcggtgacca actcacagta taccgtgtac gagaaactgg ccgctcacgt
1441 tcagggctcc tcggcggcca tcctatcgaa tgattcgtcc aatgtggtcg atctcgtgca
1501 gaaggagtac aataaaatct cgtcgtcggt agagatgaag gacaatgcta cgggagacgt
1561 gaagattaca tatttctcgt cctgtctgac aaacggaccc gagatccaga catccaaatg
1621 cgataacctg acggtgggca agcaggtgag cttcacggcc cagattcagg tgttgaagtg
1681 cccggaggat ccacgtgact ggaatcaggt catccagatc tatccggttg gcatcaacga
1741 gagcatggtg atcaaactgg agatgctgtg ctcctgcccc tgcgaacatc ccggctccat
1801 tgggtatgag gcgctgtcgc cgcactgcaa caactacggc acctacatgt gcggcatctg
1861 tgactgtggc gagcatcatt ttggtaacac ctgcgagtgc tccgtatcgg acatgaactc
1921 gacgatcaac aacgatgcca gttgtagggc ggacaacacc accaatgtgg actgcagcgg
1981 gcgcggcaat tgtgtgtgcg gcttttgtga gtgcttcaag cggcccaata cggaggaggt
2041 gatcaccggc aagttctgcg agtgcgagaa ctttagctgt gagcgtaaca agaatcagct
2101 gtgctctgga cccgatcacg gcacctgcga ctgtggccgt tgtgtctgca agcccggctg
2161 gacgggcagt agctgtgcct gccaggcctc caacgacacc tgtatgccgc cgggcggtgg
2221 cgagctctgc tccggtcacg gcacgtgcga gtgtggcgtc tgcaagtgta cggccaatga
2281 acaaggccgt tactctggcc gccactgcga aaagtgcccg acatgctcgg gccgctgtca
2341 ggagctaaag gattgcgtac agtgccagat gtatcacacc ggagtgctga agaacgtgga
2401 tgactgtgcc cgcaactgta cggccttcac tccggtgggc gtcgagaagg tgaccattga
2461 tgagcacaag gatgagcaga tgtgcacatt tttcgacgaa gatgactgca agttcatgtt
2521 caagtacagc gaacagggcg agctggtggt ccatgcccag gaggagaagg agtgcccgcc
2581 caaggtcttt atgctcggca tcgtgctggg cgtcatcgcc gccattgtgc tcgtgggcct
2641 ggccattctg ctgctctgga agctcctgac caccattcac gatcgccgtg aatttgcccg
2701 cttcgagaag gagagcatga atgccaaatg gaatgcgggc gagaatccca tctacaagca
2761 ggccacctcc accttcaaga atcccatgta tgcgggcaaa taatcaattc ggctggatcc
2821 actctccgcc atctaactaa atattagtaa caaattttgt gtcatccatg gatggattgt
2881 ttgtgcctgg gaagagacac aagagacctg tgcctgtgtg cctgtgtctc ttccccaatt
2941 aaaatctaaa tctaaatcaa cgaaagctgc gcccgatagt ttcctgttga agtcaactgc
3001 cactgaaacg cgttctaaac taagtcaaat ttatatatac acagatatag agatatatat
3061 atatataccg ccccgccccc agacaccaaa acacccgaaa acacttcgag ggcagccttc
3121 atatacaatg cgtatactta acgagcaaac gatgtgtgcg agtgccttgc tataaaatgt
3181 atttagactt gtaaaatgca tatatttgta tacccatacc tatatcgtat attgatagag
3241 agagcttcca tctacagaga gccaacagaa acagacagca caaacaaaac agccaagaaa
3301 attaactacg aaacgattat tattagggat atatatgatt taatgtgtga catcctgtgt
3361 tcagccaacc gcaatccaca accaccccca ccccccacac catcaattgt ccaaacagca
3421 catcaacttt gtttgtattt tatttctaat tcttgtttct ttataatttt gtattccatt
3481 tataattttt gatattctat tgatttattt tcgaacactt gtgtagtttt aaagcgcaat
3541 gtatttttgt acgttttatt