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LOCUS XM_022364232 3560 bp mRNA linear INV 14-MAY-2021 transcript variant X3, mRNA. ACCESSION XM_022364232 VERSION XM_022364232.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022364232.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3560 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3560 /gene="LOC111072392" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:111072392" CDS 218..2803 /gene="LOC111072392" /codon_start=1 /product="integrin beta-PS isoform X1" /protein_id="XP_022219924.1" /db_xref="GeneID:111072392" /translation="MAMIMNVAATKKTCHLAVLSVLVLALMHASLVQSQLSGKLVQNP CSGKDKCHTCIQTQSCAWCMQPNFEGRSRCFQHTSPDVCLEQFVWNPDTSEQILINKN LTLAGESQAYGSAGGFGGGAAGGGGGGQYISGGSSYHQSSSSSSSSSSASSYGSQYSG WSASSGEIVQIKPQSVNLKLRINQVHNLKVSYTQAEGYPVDLYYLMDLSKSMEDDKEK LSALGDKLSETMKSITSNFRLGFGSFVDKVLMPYVSTIPKKLEHPCDNCKAPYGYRNH MPLSNNTESFSNEVKDAAVSGNLDAPEGGFDAIMQAIACRQQVGWREQARRLLVFSTD AGFHYAGDGKLGGVIAPNDGECHLDLQGMYTHSVIQDYPSISQINQKVKENAINIIFA VTNSQYTVYEKLAAHVQGSSAAILSNDSSNVVDLVQKEYNKISSSVEMKDNATGDVKI TYFSSCLTNGPEIQTSKCDNLTVGKQVSFTAQIQVLKCPEDPRDWNQVIQIYPVGINE SMVIKLEMLCSCPCEHPGSIGYEALSPHCNNYGTYMCGICDCGEHHFGNTCECSVSDM NSTINNDASCRADNTTNVDCSGRGNCVCGFCECFKRPNTEEVITGKFCECENFSCERN KNQLCSGPDHGTCDCGRCVCKPGWTGSSCACQASNDTCMPPGGGELCSGHGTCECGVC KCTANEQGRYSGRHCEKCPTCSGRCQELKDCVQCQMYHTGVLKNVDDCARNCTAFTPV GVEKVTIDEHKDEQMCTFFDEDDCKFMFKYSEQGELVVHAQEEKECPPKVFMLGIVLG VIAAIVLVGLAILLLWKLLTTIHDRREFARFEKESMNAKWNAGENPIYKQATSTFKNP MYAGK" misc_feature 365..1777 /gene="LOC111072392" /note="Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057" /db_xref="CDD:469594" misc_feature 2336..2587 /gene="LOC111072392" /note="Integrin beta tail domain; Region: Integrin_B_tail; pfam07965" /db_xref="CDD:462325" misc_feature 2669..2791 /gene="LOC111072392" /note="Integrin beta cytoplasmic domain; Region: Integrin_b_cyt; pfam08725" /db_xref="CDD:462580" ORIGIN 1 cagtcgacac cgtttttggt gaaaaaatag taatattaat tcttgtttta tttttttgtt 61 gcaaaaacgc tgactagctg cacaaaagtg acagagaaag cggacagcga ccaagtgaga 121 ggtgcgacag agacagagag ccgatcaacg gctaacaata agtgcagcag cagaccacac 181 agagaaagag agagagagaa acagagacag agagacaatg gcgatgataa tgaatgtcgc 241 agctacaaaa aaaacctgcc atttggcggt gctatcggtc cttgttctgg ccctgatgca 301 cgcctccctg gtgcagtccc agctgtcggg gaagctggtc cagaatccgt gcagcggcaa 361 ggacaagtgc cacacgtgca tccagaccca gagctgtgcg tggtgcatgc agccaaactt 421 tgaggggcga tcgcgctgtt ttcagcacac ctcgccggat gtctgtctcg agcagttcgt 481 ctggaatccc gacacctctg agcaaattct catcaacaag aacctgacgc tagctggcga 541 gagtcaagcc tatggctcag ccggtggctt tggtggtggt gctgccggcg gcggcggcgg 601 tggtcaatac atctctggcg gcagctctta tcatcagagc tcctcctcct ccagctccag 661 ctccagcgcc agttcctatg gctcccagta ctctggttgg tcggctagtt ccggcgagat 721 tgtccaaatc aaaccacagt ctgtgaacct gaagctgcgc atcaatcaag tccacaacct 781 gaaggtgagc tacacccagg ccgagggcta tcccgtggat ctctactact tgatggacct 841 ttccaagtcc atggaggatg acaaagagaa gctgtccgcc ctgggcgaca aactgtcgga 901 gaccatgaag agcatcacgt cgaatttccg cctgggtttc ggttcgtttg tggacaaggt 961 gctcatgccc tatgtgtcca ccattcccaa aaaactcgag catccctgcg ataactgcaa 1021 ggctccctat ggttaccgca atcacatgcc actcagcaat aacaccgaaa gcttctctaa 1081 cgaggtgaaa gatgcggctg tctctggtaa tctcgatgcg cccgagggcg gttttgatgc 1141 cattatgcag gccattgcct gccgtcagca ggtgggatgg cgtgagcagg cccgtcgcct 1201 gctcgtcttc tccacggacg ctggctttca ttatgcgggc gatggcaaat tgggcggcgt 1261 gatagcgccc aacgatggcg aatgtcatct ggatctgcag ggcatgtata cgcattcggt 1321 gatacaggac tatccgagca tctcgcaaat taaccaaaag gtcaaggaga atgccatcaa 1381 cattatcttt gcggtgacca actcacagta taccgtgtac gagaaactgg ccgctcacgt 1441 tcagggctcc tcggcggcca tcctatcgaa tgattcgtcc aatgtggtcg atctcgtgca 1501 gaaggagtac aataaaatct cgtcgtcggt agagatgaag gacaatgcta cgggagacgt 1561 gaagattaca tatttctcgt cctgtctgac aaacggaccc gagatccaga catccaaatg 1621 cgataacctg acggtgggca agcaggtgag cttcacggcc cagattcagg tgttgaagtg 1681 cccggaggat ccacgtgact ggaatcaggt catccagatc tatccggttg gcatcaacga 1741 gagcatggtg atcaaactgg agatgctgtg ctcctgcccc tgcgaacatc ccggctccat 1801 tgggtatgag gcgctgtcgc cgcactgcaa caactacggc acctacatgt gcggcatctg 1861 tgactgtggc gagcatcatt ttggtaacac ctgcgagtgc tccgtatcgg acatgaactc 1921 gacgatcaac aacgatgcca gttgtagggc ggacaacacc accaatgtgg actgcagcgg 1981 gcgcggcaat tgtgtgtgcg gcttttgtga gtgcttcaag cggcccaata cggaggaggt 2041 gatcaccggc aagttctgcg agtgcgagaa ctttagctgt gagcgtaaca agaatcagct 2101 gtgctctgga cccgatcacg gcacctgcga ctgtggccgt tgtgtctgca agcccggctg 2161 gacgggcagt agctgtgcct gccaggcctc caacgacacc tgtatgccgc cgggcggtgg 2221 cgagctctgc tccggtcacg gcacgtgcga gtgtggcgtc tgcaagtgta cggccaatga 2281 acaaggccgt tactctggcc gccactgcga aaagtgcccg acatgctcgg gccgctgtca 2341 ggagctaaag gattgcgtac agtgccagat gtatcacacc ggagtgctga agaacgtgga 2401 tgactgtgcc cgcaactgta cggccttcac tccggtgggc gtcgagaagg tgaccattga 2461 tgagcacaag gatgagcaga tgtgcacatt tttcgacgaa gatgactgca agttcatgtt 2521 caagtacagc gaacagggcg agctggtggt ccatgcccag gaggagaagg agtgcccgcc 2581 caaggtcttt atgctcggca tcgtgctggg cgtcatcgcc gccattgtgc tcgtgggcct 2641 ggccattctg ctgctctgga agctcctgac caccattcac gatcgccgtg aatttgcccg 2701 cttcgagaag gagagcatga atgccaaatg gaatgcgggc gagaatccca tctacaagca 2761 ggccacctcc accttcaaga atcccatgta tgcgggcaaa taatcaattc ggctggatcc 2821 actctccgcc atctaactaa atattagtaa caaattttgt gtcatccatg gatggattgt 2881 ttgtgcctgg gaagagacac aagagacctg tgcctgtgtg cctgtgtctc ttccccaatt 2941 aaaatctaaa tctaaatcaa cgaaagctgc gcccgatagt ttcctgttga agtcaactgc 3001 cactgaaacg cgttctaaac taagtcaaat ttatatatac acagatatag agatatatat 3061 atatataccg ccccgccccc agacaccaaa acacccgaaa acacttcgag ggcagccttc 3121 atatacaatg cgtatactta acgagcaaac gatgtgtgcg agtgccttgc tataaaatgt 3181 atttagactt gtaaaatgca tatatttgta tacccatacc tatatcgtat attgatagag 3241 agagcttcca tctacagaga gccaacagaa acagacagca caaacaaaac agccaagaaa 3301 attaactacg aaacgattat tattagggat atatatgatt taatgtgtga catcctgtgt 3361 tcagccaacc gcaatccaca accaccccca ccccccacac catcaattgt ccaaacagca 3421 catcaacttt gtttgtattt tatttctaat tcttgtttct ttataatttt gtattccatt 3481 tataattttt gatattctat tgatttattt tcgaacactt gtgtagtttt aaagcgcaat 3541 gtatttttgt acgttttatt