PREDICTED: Drosophila obscura integrin beta-PS (LOC111072392),
LOCUS XM_022364231 3571 bp mRNA linear INV 14-MAY-2021
transcript variant X1, mRNA.
ACCESSION XM_022364231
VERSION XM_022364231.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022364231.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3571
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3571
/gene="LOC111072392"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 15 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111072392"
CDS 229..2814
/gene="LOC111072392"
/codon_start=1
/product="integrin beta-PS isoform X1"
/protein_id="XP_022219923.1"
/db_xref="GeneID:111072392"
/translation="MAMIMNVAATKKTCHLAVLSVLVLALMHASLVQSQLSGKLVQNP
CSGKDKCHTCIQTQSCAWCMQPNFEGRSRCFQHTSPDVCLEQFVWNPDTSEQILINKN
LTLAGESQAYGSAGGFGGGAAGGGGGGQYISGGSSYHQSSSSSSSSSSASSYGSQYSG
WSASSGEIVQIKPQSVNLKLRINQVHNLKVSYTQAEGYPVDLYYLMDLSKSMEDDKEK
LSALGDKLSETMKSITSNFRLGFGSFVDKVLMPYVSTIPKKLEHPCDNCKAPYGYRNH
MPLSNNTESFSNEVKDAAVSGNLDAPEGGFDAIMQAIACRQQVGWREQARRLLVFSTD
AGFHYAGDGKLGGVIAPNDGECHLDLQGMYTHSVIQDYPSISQINQKVKENAINIIFA
VTNSQYTVYEKLAAHVQGSSAAILSNDSSNVVDLVQKEYNKISSSVEMKDNATGDVKI
TYFSSCLTNGPEIQTSKCDNLTVGKQVSFTAQIQVLKCPEDPRDWNQVIQIYPVGINE
SMVIKLEMLCSCPCEHPGSIGYEALSPHCNNYGTYMCGICDCGEHHFGNTCECSVSDM
NSTINNDASCRADNTTNVDCSGRGNCVCGFCECFKRPNTEEVITGKFCECENFSCERN
KNQLCSGPDHGTCDCGRCVCKPGWTGSSCACQASNDTCMPPGGGELCSGHGTCECGVC
KCTANEQGRYSGRHCEKCPTCSGRCQELKDCVQCQMYHTGVLKNVDDCARNCTAFTPV
GVEKVTIDEHKDEQMCTFFDEDDCKFMFKYSEQGELVVHAQEEKECPPKVFMLGIVLG
VIAAIVLVGLAILLLWKLLTTIHDRREFARFEKESMNAKWNAGENPIYKQATSTFKNP
MYAGK"
misc_feature 376..1788
/gene="LOC111072392"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cl00057"
/db_xref="CDD:469594"
misc_feature 2347..2598
/gene="LOC111072392"
/note="Integrin beta tail domain; Region: Integrin_B_tail;
pfam07965"
/db_xref="CDD:462325"
misc_feature 2680..2802
/gene="LOC111072392"
/note="Integrin beta cytoplasmic domain; Region:
Integrin_b_cyt; pfam08725"
/db_xref="CDD:462580"
ORIGIN
1 tttgacacct ctaatttgat cgataatcga taagtccgcg agttaacaac atcgagtggc
61 agtcgacacc gtttttggtg aaaaaatact gcacaaaagt gacagagaaa gcggacagcg
121 accaagtgag aggtgcgaca gagacagaga gccgatcaac ggctaacaat aagtgcagca
181 gcagaccaca cagagaaaga gagagagaga aacagagaca gagagacaat ggcgatgata
241 atgaatgtcg cagctacaaa aaaaacctgc catttggcgg tgctatcggt ccttgttctg
301 gccctgatgc acgcctccct ggtgcagtcc cagctgtcgg ggaagctggt ccagaatccg
361 tgcagcggca aggacaagtg ccacacgtgc atccagaccc agagctgtgc gtggtgcatg
421 cagccaaact ttgaggggcg atcgcgctgt tttcagcaca cctcgccgga tgtctgtctc
481 gagcagttcg tctggaatcc cgacacctct gagcaaattc tcatcaacaa gaacctgacg
541 ctagctggcg agagtcaagc ctatggctca gccggtggct ttggtggtgg tgctgccggc
601 ggcggcggcg gtggtcaata catctctggc ggcagctctt atcatcagag ctcctcctcc
661 tccagctcca gctccagcgc cagttcctat ggctcccagt actctggttg gtcggctagt
721 tccggcgaga ttgtccaaat caaaccacag tctgtgaacc tgaagctgcg catcaatcaa
781 gtccacaacc tgaaggtgag ctacacccag gccgagggct atcccgtgga tctctactac
841 ttgatggacc tttccaagtc catggaggat gacaaagaga agctgtccgc cctgggcgac
901 aaactgtcgg agaccatgaa gagcatcacg tcgaatttcc gcctgggttt cggttcgttt
961 gtggacaagg tgctcatgcc ctatgtgtcc accattccca aaaaactcga gcatccctgc
1021 gataactgca aggctcccta tggttaccgc aatcacatgc cactcagcaa taacaccgaa
1081 agcttctcta acgaggtgaa agatgcggct gtctctggta atctcgatgc gcccgagggc
1141 ggttttgatg ccattatgca ggccattgcc tgccgtcagc aggtgggatg gcgtgagcag
1201 gcccgtcgcc tgctcgtctt ctccacggac gctggctttc attatgcggg cgatggcaaa
1261 ttgggcggcg tgatagcgcc caacgatggc gaatgtcatc tggatctgca gggcatgtat
1321 acgcattcgg tgatacagga ctatccgagc atctcgcaaa ttaaccaaaa ggtcaaggag
1381 aatgccatca acattatctt tgcggtgacc aactcacagt ataccgtgta cgagaaactg
1441 gccgctcacg ttcagggctc ctcggcggcc atcctatcga atgattcgtc caatgtggtc
1501 gatctcgtgc agaaggagta caataaaatc tcgtcgtcgg tagagatgaa ggacaatgct
1561 acgggagacg tgaagattac atatttctcg tcctgtctga caaacggacc cgagatccag
1621 acatccaaat gcgataacct gacggtgggc aagcaggtga gcttcacggc ccagattcag
1681 gtgttgaagt gcccggagga tccacgtgac tggaatcagg tcatccagat ctatccggtt
1741 ggcatcaacg agagcatggt gatcaaactg gagatgctgt gctcctgccc ctgcgaacat
1801 cccggctcca ttgggtatga ggcgctgtcg ccgcactgca acaactacgg cacctacatg
1861 tgcggcatct gtgactgtgg cgagcatcat tttggtaaca cctgcgagtg ctccgtatcg
1921 gacatgaact cgacgatcaa caacgatgcc agttgtaggg cggacaacac caccaatgtg
1981 gactgcagcg ggcgcggcaa ttgtgtgtgc ggcttttgtg agtgcttcaa gcggcccaat
2041 acggaggagg tgatcaccgg caagttctgc gagtgcgaga actttagctg tgagcgtaac
2101 aagaatcagc tgtgctctgg acccgatcac ggcacctgcg actgtggccg ttgtgtctgc
2161 aagcccggct ggacgggcag tagctgtgcc tgccaggcct ccaacgacac ctgtatgccg
2221 ccgggcggtg gcgagctctg ctccggtcac ggcacgtgcg agtgtggcgt ctgcaagtgt
2281 acggccaatg aacaaggccg ttactctggc cgccactgcg aaaagtgccc gacatgctcg
2341 ggccgctgtc aggagctaaa ggattgcgta cagtgccaga tgtatcacac cggagtgctg
2401 aagaacgtgg atgactgtgc ccgcaactgt acggccttca ctccggtggg cgtcgagaag
2461 gtgaccattg atgagcacaa ggatgagcag atgtgcacat ttttcgacga agatgactgc
2521 aagttcatgt tcaagtacag cgaacagggc gagctggtgg tccatgccca ggaggagaag
2581 gagtgcccgc ccaaggtctt tatgctcggc atcgtgctgg gcgtcatcgc cgccattgtg
2641 ctcgtgggcc tggccattct gctgctctgg aagctcctga ccaccattca cgatcgccgt
2701 gaatttgccc gcttcgagaa ggagagcatg aatgccaaat ggaatgcggg cgagaatccc
2761 atctacaagc aggccacctc caccttcaag aatcccatgt atgcgggcaa ataatcaatt
2821 cggctggatc cactctccgc catctaacta aatattagta acaaattttg tgtcatccat
2881 ggatggattg tttgtgcctg ggaagagaca caagagacct gtgcctgtgt gcctgtgtct
2941 cttccccaat taaaatctaa atctaaatca acgaaagctg cgcccgatag tttcctgttg
3001 aagtcaactg ccactgaaac gcgttctaaa ctaagtcaaa tttatatata cacagatata
3061 gagatatata tatatatacc gccccgcccc cagacaccaa aacacccgaa aacacttcga
3121 gggcagcctt catatacaat gcgtatactt aacgagcaaa cgatgtgtgc gagtgccttg
3181 ctataaaatg tatttagact tgtaaaatgc atatatttgt atacccatac ctatatcgta
3241 tattgataga gagagcttcc atctacagag agccaacaga aacagacagc acaaacaaaa
3301 cagccaagaa aattaactac gaaacgatta ttattaggga tatatatgat ttaatgtgtg
3361 acatcctgtg ttcagccaac cgcaatccac aaccaccccc accccccaca ccatcaattg
3421 tccaaacagc acatcaactt tgtttgtatt ttatttctaa ttcttgtttc tttataattt
3481 tgtattccat ttataatttt tgatattcta ttgatttatt ttcgaacact tgtgtagttt
3541 taaagcgcaa tgtatttttg tacgttttat t