PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361534 6856 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X50, mRNA.
ACCESSION XM_022361534
VERSION XM_022361534.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361534.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6856
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6856
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 50 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 6 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6707
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X50"
/protein_id="XP_022217226.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNILT
FVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM
PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG
IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM
GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNISG
AGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW
HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA
KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS
IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTI
RNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLG
SRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTC
LDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAA
GRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEW
ISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMK
LCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTL
NLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFT
DFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSN
FGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGK
GVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNK
PKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDES
HKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPAD
CCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALAL
EDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVS
LINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLV
CLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDH
VGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTL
NLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQA
IVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLL
KIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLR
LVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYN
FKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLS
YLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYD
QLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIE
ETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEG
DGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVA
PQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGF
VTKNGHKVVIHSRSPSITSRTADV"
misc_feature 654..1508
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1863..2420
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2649..3284
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3360..4124
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4134..4949
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4917..5075
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4962..4973
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5097..5849
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5880..6023
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagatccgat atgatgacga ggacgaggat gaaggtccac
421 aaccggatcc tacacttgaa cagggtgtgc caatacctgt tcgactgcag ggcagcttcc
481 ctccggaatt ggcctccact cccctcgagg atatcgatcc cttctacagc aatatactga
541 cattcgtagt tgtaagcaaa ggaaaagata tttttcgctt ttctgcatca aaagcaatgt
601 ggctgctcga tccattcaat ccgatacgtc gtgtggccat ttacatttta gtgcatccac
661 tattttcgtt attcatcatt accacaattc tcgtcaactg catcctgatg ataatgccga
721 caacgcccac agttgagtcc actgaggtga tattcaccgg aatctacaca tttgaatcag
781 ctgttaaagt gatggcacga ggtttcattt tatgcccgtt tacgtatctt agagatgcat
841 ggaattggct ggacttcgta gtaatagctt tagcttatgt gaccatgggt atagatttag
901 gtaatcttgc agccttgcga acgtttaggg tgctgcgagc gcttaaaacc gtagccattg
961 tgccaggctt gaagaccatt gtcggtgcgg tcatcgaatc tgtaaagaat ctgcgcgatg
1021 tgataatttt gacaatgttc tccctgtcgg tgttcgcgct gatggggctg caaatctaca
1081 tgggcgtgct aacgcagaag tgcatcaaga agttcccgct ggacggctcc tggggcaacc
1141 tgaccgacga gaactgggcc tatcacaata gcaacaactc taattggtat tcggaagacg
1201 acggtatatc ctttccgttg tgcggtaata tctctggagc ggggcaatgt gaagacgatt
1261 acgtgtgtct gcaggggttc gggccgaacc cgaactatgg ctacaccagt ttcgattcgt
1321 tcggttgggc gtttctgtcc gccttccggc tgatgacgca ggacttctgg gaggatctgt
1381 atcagctggt gttgcgtgcc gcaggaccct ggcacatgct gttctttata gtcatcatct
1441 tcctaggttc attctatctt gtgaatttga ttttggccat tgttgccatg tcgtatgacg
1501 aattgcaaaa gaaggccgaa gaagaagagg ctgccgaaga ggaggcgata cgtgaagccg
1561 aggaagctgc cgccgccaaa gcagccaagc tggaggagcg cgccaatgcg caggcccagg
1621 ccgccgccga tgcagctgcc gccgaagagg cggctcttca tccggagatg gccaagagtc
1681 cgacgtattc gtgcatcagc tatgagctat ttgtgggcgg cgagaaaggc aacgatgaca
1741 acaacaagga gaagatgtcc atacgcagcg ttgaggtgga gtcggagtcg gtgagcgtta
1801 tacaaagaca accagcacct accacagcac accaagctac caaagttcgt aaagtgagca
1861 cgacatcctt atccttacct ggttcaccgt ttaacatacg caggggatca cgtagttctc
1921 acaagtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc
1981 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga
2041 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa
2101 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac
2161 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca
2221 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct
2281 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg
2341 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa
2401 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc
2461 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg
2521 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag
2581 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga
2641 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt
2701 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa
2761 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc
2821 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat
2881 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc
2941 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg
3001 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct
3061 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc
3121 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt
3181 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg
3241 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc
3301 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg
3361 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg
3421 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa
3481 gtgatcaacc atcaggcaaa ggcgtttgtc gttgtatatc tgcagagcac ggcgacaacg
3541 agctggagct gggccacgac gagatactcg ccgacgggct catcaagaag ggcatcaagg
3601 aggcgacaca gctggaggtg gccatcggtg atggcatgga gttcacgata cacggcgaca
3661 tgaagaacaa caagccgaag aaatccaaat atctaaataa cgcaacgatg attggcaact
3721 caattaacca ccaagacaat agactggaac acgagctaaa ccatagaggt ttgtccttac
3781 aggacgacga cactgccagc attaactcat atggtagcca taagaatcga ccattcaagg
3841 atgagagcca caagggcagc gccgagacga tggagggcga ggagaagcgg gacgccagca
3901 aggaggattt aggtatcgat gaggagctcg acgaggaggg cgaattggag gagggcccgc
3961 tcgacggcga tatcatcata catgccaacg atgaggatat actcgatgaa tatccagctg
4021 attgctgccc cgattcgtac tataagaaat ttccgatctt agccggtgat gatgactcgc
4081 cgttctggca aggatggggc aatttacgac tgaaaacttt tcaattaatt gaaaataaat
4141 attttgaaac agctgttatc actatgattt taatgagtag cttagctttg gcattagaag
4201 atgtacatct gccacaaaga cccatactgc aggatatttt atactatatg gacagaatat
4261 ttacggttat attcttcttg gaaatgttaa tcaagtggct ggcgctcggc ttcaaagtgt
4321 acttcacgaa cgcgtggtgc tggctcgatt tcgtcattgt catggtatcg cttatcaact
4381 tcgttgcttc acttgttgga gctggtggta ttcaagcctt caagactatg cgaacgttaa
4441 gagcactgag accactacgt gccatgtccc gtatgcaggg catgagggtc gtcgttaatg
4501 cgctggtaca agctataccg tccatcttca atgtgctatt ggtgtgtcta atattttggc
4561 taatttttgc cataatgggt gtacagcttt ttgctggaaa atattttaag tgcgaggaca
4621 tgaatggcac gaagctcagc cacgagatca taccaaatcg caatgcctgc gaaagcgaga
4681 actacacgtg ggtgaattca gcaatgaatt tcgatcatgt aggtaacgcg tatctgtgcc
4741 ttttccaagt ggccaccttc aaaggctgga tacaaatcat gaacgatgct atcgattcac
4801 gagaggtgga caagcagcca attcgtgaaa cgaacatcta catgtattta tatttcgtat
4861 tcttcatcat atttggatca tttttcacac tcaatctgtt cattggtgtt atcattgata
4921 attttaatga gcaaaagaaa aaagcaggtg gatcattaga aatgttcatg acagaagatc
4981 agaaaaagta ctataatgct atgaaaaaga tgggctctaa aaaaccatta aaagccattc
5041 caagaccaag gtggcgtcca caagcaatag tctttgaaat agtaaccgat aagaaattcg
5101 atatagtcat aatgttattc attggtctga acatgttcac catgacactc gatcgttacg
5161 atgcgtcgga cacgtacaac gcggtccttg actatctcaa tgcgatattc gtagttattt
5221 tcagttccga atgtctatta aaaatattcg ctttacgata tcactatttt attgagccat
5281 ggaatttatt tgatgtagta gttgtcattt tatccatctt aggtctcgta cttagcgata
5341 ttatcgagaa atacttcgta tcgccgacac tgctccgagt ggtgcgcgtg gccaaagtgg
5401 gtcgcgtact gcgtctggtg aagggcgcca agggtatacg aacgctgctg ttcgccctgg
5461 ccatgtcgct gccggcgctg ttcaacatct gcctgctgct gttcctggtc atgttcatct
5521 tcgcgatatt cggcatgtcg ttcttcatgc atgtgaagga gaagagcggc atcaacgacg
5581 tctacaactt caagacgttc ggacagagca tgatcctgct ctttcagatg tctacctcag
5641 ccggttggga tggtgtactc gacgccatta tcaatgagga agcatgcgat ccacccgaca
5701 acgacaaagg ctatccgggc aattgtggtt cagcgaccgt tggaataacg tttctcctct
5761 catacctagt tataagcttt ttgatagtta ttaatatgta cattgctgtc attctcgaga
5821 actatagtca ggccaccgag gatgtgcagg agggtctcac cgacgacgat tacgatatgt
5881 actatgagat ctggcaacag ttcgatccgg agggcaccca gtacatacga tacgaccagc
5941 tgtccgagtt cctcgacgtg ctggagcccc cgctccagat tcacaagccc aacaagtaca
6001 aaatcatatc gatggacata cccatctgtc gcggtgacct catgtactgt gtggacatac
6061 tggacgcact gaccaaagac tttttcgcgc gcaaaggcaa tcccattgag gagacgggcg
6121 agattggtga gattgccgcc aggccggaca ccgagggcta cgagcccgtc tcctccaccc
6181 tctggcgaca gcgggaggag tactgtgccc gcctcattca acatgcctgg cgcaagcata
6241 aaacgcgcgc cgagggcggt ggtgcaccgt ccgacgcgga aggcgacggc cccgaagatg
6301 gtgatgcggg tggcggtggc ggggcggcgc tgatgctggg tgttctggat gttccagatg
6361 ctgctggcga tgcagcaacc actggctccc atgacggggc aacggcactc gatcccgaga
6421 ccgatccatc gggagtaccg gcggcagcgg cggtggcccc acagccagcc ggtgacggcg
6481 gcgagggacc ggatggagga gcaacagccg atccgcacga gagcaatgta aatagtccga
6541 cgatggacgg cgcgacggcg ggcagcccgg gcgcagggag cgctggcagc actggccgac
6601 agacggccgt tctcgtggag agcgatgggt ttgtgaccaa gaacgggcac aaggttgtaa
6661 tacactcgcg ttcgccgagc ataacgtcgc gcacggcgga tgtctgagcc aggcctcgcc
6721 cccccctcca agatgcacgc gagtattagg tgcaggtgca gatgcagtgc agtggtggtg
6781 ccacaacaac aacaacaaca acagcaggtg ccactggtag ctgcaattgc aactgcaaca
6841 gcagcaacag gaagaa