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LOCUS XM_022361534 6856 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X50, mRNA. ACCESSION XM_022361534 VERSION XM_022361534.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361534.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6856 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6856 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 50 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6707 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X50" /protein_id="XP_022217226.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNILT FVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNISG AGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTI RNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLG SRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTC LDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAA GRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEW ISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMK LCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTL NLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFT DFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSN FGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGK GVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNK PKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDES HKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPAD CCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALAL EDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVS LINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLV CLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDH VGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTL NLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQA IVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLL KIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLR LVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYN FKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLS YLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYD QLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIE ETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEG DGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVA PQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGF VTKNGHKVVIHSRSPSITSRTADV" misc_feature 654..1508 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1863..2420 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2649..3284 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3360..4124 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4134..4949 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4917..5075 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4962..4973 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5097..5849 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5880..6023 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagatccgat atgatgacga ggacgaggat gaaggtccac 421 aaccggatcc tacacttgaa cagggtgtgc caatacctgt tcgactgcag ggcagcttcc 481 ctccggaatt ggcctccact cccctcgagg atatcgatcc cttctacagc aatatactga 541 cattcgtagt tgtaagcaaa ggaaaagata tttttcgctt ttctgcatca aaagcaatgt 601 ggctgctcga tccattcaat ccgatacgtc gtgtggccat ttacatttta gtgcatccac 661 tattttcgtt attcatcatt accacaattc tcgtcaactg catcctgatg ataatgccga 721 caacgcccac agttgagtcc actgaggtga tattcaccgg aatctacaca tttgaatcag 781 ctgttaaagt gatggcacga ggtttcattt tatgcccgtt tacgtatctt agagatgcat 841 ggaattggct ggacttcgta gtaatagctt tagcttatgt gaccatgggt atagatttag 901 gtaatcttgc agccttgcga acgtttaggg tgctgcgagc gcttaaaacc gtagccattg 961 tgccaggctt gaagaccatt gtcggtgcgg tcatcgaatc tgtaaagaat ctgcgcgatg 1021 tgataatttt gacaatgttc tccctgtcgg tgttcgcgct gatggggctg caaatctaca 1081 tgggcgtgct aacgcagaag tgcatcaaga agttcccgct ggacggctcc tggggcaacc 1141 tgaccgacga gaactgggcc tatcacaata gcaacaactc taattggtat tcggaagacg 1201 acggtatatc ctttccgttg tgcggtaata tctctggagc ggggcaatgt gaagacgatt 1261 acgtgtgtct gcaggggttc gggccgaacc cgaactatgg ctacaccagt ttcgattcgt 1321 tcggttgggc gtttctgtcc gccttccggc tgatgacgca ggacttctgg gaggatctgt 1381 atcagctggt gttgcgtgcc gcaggaccct ggcacatgct gttctttata gtcatcatct 1441 tcctaggttc attctatctt gtgaatttga ttttggccat tgttgccatg tcgtatgacg 1501 aattgcaaaa gaaggccgaa gaagaagagg ctgccgaaga ggaggcgata cgtgaagccg 1561 aggaagctgc cgccgccaaa gcagccaagc tggaggagcg cgccaatgcg caggcccagg 1621 ccgccgccga tgcagctgcc gccgaagagg cggctcttca tccggagatg gccaagagtc 1681 cgacgtattc gtgcatcagc tatgagctat ttgtgggcgg cgagaaaggc aacgatgaca 1741 acaacaagga gaagatgtcc atacgcagcg ttgaggtgga gtcggagtcg gtgagcgtta 1801 tacaaagaca accagcacct accacagcac accaagctac caaagttcgt aaagtgagca 1861 cgacatcctt atccttacct ggttcaccgt ttaacatacg caggggatca cgtagttctc 1921 acaagtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc 1981 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga 2041 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa 2101 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac 2161 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca 2221 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct 2281 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg 2341 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa 2401 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc 2461 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg 2521 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag 2581 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga 2641 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt 2701 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa 2761 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc 2821 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat 2881 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc 2941 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg 3001 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct 3061 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc 3121 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt 3181 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg 3241 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc 3301 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg 3361 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg 3421 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa 3481 gtgatcaacc atcaggcaaa ggcgtttgtc gttgtatatc tgcagagcac ggcgacaacg 3541 agctggagct gggccacgac gagatactcg ccgacgggct catcaagaag ggcatcaagg 3601 aggcgacaca gctggaggtg gccatcggtg atggcatgga gttcacgata cacggcgaca 3661 tgaagaacaa caagccgaag aaatccaaat atctaaataa cgcaacgatg attggcaact 3721 caattaacca ccaagacaat agactggaac acgagctaaa ccatagaggt ttgtccttac 3781 aggacgacga cactgccagc attaactcat atggtagcca taagaatcga ccattcaagg 3841 atgagagcca caagggcagc gccgagacga tggagggcga ggagaagcgg gacgccagca 3901 aggaggattt aggtatcgat gaggagctcg acgaggaggg cgaattggag gagggcccgc 3961 tcgacggcga tatcatcata catgccaacg atgaggatat actcgatgaa tatccagctg 4021 attgctgccc cgattcgtac tataagaaat ttccgatctt agccggtgat gatgactcgc 4081 cgttctggca aggatggggc aatttacgac tgaaaacttt tcaattaatt gaaaataaat 4141 attttgaaac agctgttatc actatgattt taatgagtag cttagctttg gcattagaag 4201 atgtacatct gccacaaaga cccatactgc aggatatttt atactatatg gacagaatat 4261 ttacggttat attcttcttg gaaatgttaa tcaagtggct ggcgctcggc ttcaaagtgt 4321 acttcacgaa cgcgtggtgc tggctcgatt tcgtcattgt catggtatcg cttatcaact 4381 tcgttgcttc acttgttgga gctggtggta ttcaagcctt caagactatg cgaacgttaa 4441 gagcactgag accactacgt gccatgtccc gtatgcaggg catgagggtc gtcgttaatg 4501 cgctggtaca agctataccg tccatcttca atgtgctatt ggtgtgtcta atattttggc 4561 taatttttgc cataatgggt gtacagcttt ttgctggaaa atattttaag tgcgaggaca 4621 tgaatggcac gaagctcagc cacgagatca taccaaatcg caatgcctgc gaaagcgaga 4681 actacacgtg ggtgaattca gcaatgaatt tcgatcatgt aggtaacgcg tatctgtgcc 4741 ttttccaagt ggccaccttc aaaggctgga tacaaatcat gaacgatgct atcgattcac 4801 gagaggtgga caagcagcca attcgtgaaa cgaacatcta catgtattta tatttcgtat 4861 tcttcatcat atttggatca tttttcacac tcaatctgtt cattggtgtt atcattgata 4921 attttaatga gcaaaagaaa aaagcaggtg gatcattaga aatgttcatg acagaagatc 4981 agaaaaagta ctataatgct atgaaaaaga tgggctctaa aaaaccatta aaagccattc 5041 caagaccaag gtggcgtcca caagcaatag tctttgaaat agtaaccgat aagaaattcg 5101 atatagtcat aatgttattc attggtctga acatgttcac catgacactc gatcgttacg 5161 atgcgtcgga cacgtacaac gcggtccttg actatctcaa tgcgatattc gtagttattt 5221 tcagttccga atgtctatta aaaatattcg ctttacgata tcactatttt attgagccat 5281 ggaatttatt tgatgtagta gttgtcattt tatccatctt aggtctcgta cttagcgata 5341 ttatcgagaa atacttcgta tcgccgacac tgctccgagt ggtgcgcgtg gccaaagtgg 5401 gtcgcgtact gcgtctggtg aagggcgcca agggtatacg aacgctgctg ttcgccctgg 5461 ccatgtcgct gccggcgctg ttcaacatct gcctgctgct gttcctggtc atgttcatct 5521 tcgcgatatt cggcatgtcg ttcttcatgc atgtgaagga gaagagcggc atcaacgacg 5581 tctacaactt caagacgttc ggacagagca tgatcctgct ctttcagatg tctacctcag 5641 ccggttggga tggtgtactc gacgccatta tcaatgagga agcatgcgat ccacccgaca 5701 acgacaaagg ctatccgggc aattgtggtt cagcgaccgt tggaataacg tttctcctct 5761 catacctagt tataagcttt ttgatagtta ttaatatgta cattgctgtc attctcgaga 5821 actatagtca ggccaccgag gatgtgcagg agggtctcac cgacgacgat tacgatatgt 5881 actatgagat ctggcaacag ttcgatccgg agggcaccca gtacatacga tacgaccagc 5941 tgtccgagtt cctcgacgtg ctggagcccc cgctccagat tcacaagccc aacaagtaca 6001 aaatcatatc gatggacata cccatctgtc gcggtgacct catgtactgt gtggacatac 6061 tggacgcact gaccaaagac tttttcgcgc gcaaaggcaa tcccattgag gagacgggcg 6121 agattggtga gattgccgcc aggccggaca ccgagggcta cgagcccgtc tcctccaccc 6181 tctggcgaca gcgggaggag tactgtgccc gcctcattca acatgcctgg cgcaagcata 6241 aaacgcgcgc cgagggcggt ggtgcaccgt ccgacgcgga aggcgacggc cccgaagatg 6301 gtgatgcggg tggcggtggc ggggcggcgc tgatgctggg tgttctggat gttccagatg 6361 ctgctggcga tgcagcaacc actggctccc atgacggggc aacggcactc gatcccgaga 6421 ccgatccatc gggagtaccg gcggcagcgg cggtggcccc acagccagcc ggtgacggcg 6481 gcgagggacc ggatggagga gcaacagccg atccgcacga gagcaatgta aatagtccga 6541 cgatggacgg cgcgacggcg ggcagcccgg gcgcagggag cgctggcagc actggccgac 6601 agacggccgt tctcgtggag agcgatgggt ttgtgaccaa gaacgggcac aaggttgtaa 6661 tacactcgcg ttcgccgagc ataacgtcgc gcacggcgga tgtctgagcc aggcctcgcc 6721 cccccctcca agatgcacgc gagtattagg tgcaggtgca gatgcagtgc agtggtggtg 6781 ccacaacaac aacaacaaca acagcaggtg ccactggtag ctgcaattgc aactgcaaca 6841 gcagcaacag gaagaa