PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361531 6691 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X44, mRNA.
ACCESSION XM_022361531
VERSION XM_022361531.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361531.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6691
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6691
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 47 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 6 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6542
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X44"
/protein_id="XP_022217223.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSHKYTIRNGRGRFGIPGS
DRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSR
ISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDF
EIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGED
DDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV
NTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI
IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV
LCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES
MWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE
AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKK
GIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFK
DESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEY
PADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLA
LALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIV
MVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNV
LLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMN
FDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSF
FTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWR
PQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSE
CLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGR
VLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGIND
VYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITF
LLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYI
RYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSD
AEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAA
AVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVES
DGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1827..2384
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2589..3224
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3300..3959
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 3969..4784
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4752..4910
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4797..4808
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4932..5684
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5715..5858
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcgacat ccttatcctt acctggttca ccgtttaaca
1861 tacgcagggg atcacgtagt tctcacaagt acacgatccg gaatggacgt ggacgctttg
1921 gtatacccgg cagcgatcgc aagccgttgg tattgtcaac atatcaggat gctcagcagc
1981 acttgcccta tgccgatgat tcgaacgctg ttacgcccat gtccgaggag aacggtgcca
2041 ttatagtgcc cgtttattat ggaaatctag gctccaggca ttcatcgtat acttcgcatc
2101 agtccagaat atcgtatacc tcacatggcg atctattggg cggcatggcc gtcatgggcg
2161 tcagcacaat gaccaaggag agcaaattgc gaaatcgcaa ctcacgcaat caatcagtgg
2221 gcgccaccaa tggcggcacc acctgcctgg accccaatca caaggtcgag catcgcgact
2281 tcgaaatcgg tctggagtgc acggacgaag ctggcaagat taaacatcat gacaatcctt
2341 ttatcgagcc cgtccagaca caaacggtag tcgacatgaa agatgtgatg gtactgaatg
2401 acattatcga acaggccgct ggtcggcaca gtcgggctag tgatcgcggt gaggacgatg
2461 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag
2521 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga
2581 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt
2641 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa
2701 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc
2761 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat
2821 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc
2881 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg
2941 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct
3001 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc
3061 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt
3121 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg
3181 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc
3241 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg
3301 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg
3361 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa
3421 gtgatcaacc atcagagcac ggcgacaacg agctggagct gggccacgac gagatactcg
3481 ccgacgggct catcaagaag ggcatcaagg aggcgacaca gctggaggtg gccatcggtg
3541 atggcatgga gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat
3601 atctaaataa cgcaacggac gacgacactg ccagcattaa ctcatatggt agccataaga
3661 atcgaccatt caaggatgag agccacaagg gcagcgccga gacgatggag ggcgaggaga
3721 agcgggacgc cagcaaggag gatttaggta tcgatgagga gctcgacgag gagggcgaat
3781 tggaggaggg cccgctcgac ggcgatatca tcatacatgc caacgatgag gatatactcg
3841 atgaatatcc agctgattgc tgccccgatt cgtactataa gaaatttccg atcttagccg
3901 gtgatgatga ctcgccgttc tggcaaggat ggggcaattt acgactgaaa acttttcaat
3961 taattgaaaa taaatatttt gaaacagctg ttatcactat gattttaatg agtagcttag
4021 ctttggcatt agaagatgta catctgccac aaagacccat actgcaggat attttatact
4081 atatggacag aatatttacg gttatattct tcttggaaat gttaatcaag tggctggcgc
4141 tcggcttcaa agtgtacttc acgaacgcgt ggtgctggct cgatttcgtc attgtcatgg
4201 tatcgcttat caacttcgtt gcttcacttg ttggagctgg tggtattcaa gccttcaaga
4261 ctatgcgaac gttaagagca ctgagaccac tacgtgccat gtcccgtatg cagggcatga
4321 gggtcgtcgt taatgcgctg gtacaagcta taccgtccat cttcaatgtg ctattggtgt
4381 gtctaatatt ttggctaatt tttgccataa tgggtgtaca gctttttgct ggaaaatatt
4441 ttaagtgcga ggacatgaat ggcacgaagc tcagccacga gatcatacca aatcgcaatg
4501 cctgcgaaag cgagaactac acgtgggtga attcagcaat gaatttcgat catgtaggta
4561 acgcgtatct gtgccttttc caagtggcca ccttcaaagg ctggatacaa atcatgaacg
4621 atgctatcga ttcacgagag gtggacaagc agccaattcg tgaaacgaac atctacatgt
4681 atttatattt cgtattcttc atcatatttg gatcattttt cacactcaat ctgttcattg
4741 gtgttatcat tgataatttt aatgagcaaa agaaaaaagc aggtggatca ttagaaatgt
4801 tcatgacaga agatcagaaa aagtactata atgctatgaa aaagatgggc tctaaaaaac
4861 cattaaaagc cattccaaga ccaaggtggc gtccacaagc aatagtcttt gaaatagtaa
4921 ccgataagaa attcgatata gtcataatgt tattcattgg tctgaacatg ttcaccatga
4981 cactcgatcg ttacgatgcg tcggacacgt acaacgcggt ccttgactat ctcaatgcga
5041 tattcgtagt tattttcagt tccgaatgtc tattaaaaat attcgcttta cgatatcact
5101 attttattga gccatggaat ttatttgatg tagtagttgt cattttatcc atcttaggtc
5161 tcgtacttag cgatattatc gagaaatact tcgtatcgcc gacactgctc cgagtggtgc
5221 gcgtggccaa agtgggtcgc gtactgcgtc tggtgaaggg cgccaagggt atacgaacgc
5281 tgctgttcgc cctggccatg tcgctgccgg cgctgttcaa catctgcctg ctgctgttcc
5341 tggtcatgtt catcttcgcg atattcggca tgtcgttctt catgcatgtg aaggagaaga
5401 gcggcatcaa cgacgtctac aacttcaaga cgttcggaca gagcatgatc ctgctctttc
5461 agatgtctac ctcagccggt tgggatggtg tactcgacgc cattatcaat gaggaagcat
5521 gcgatccacc cgacaacgac aaaggctatc cgggcaattg tggttcagcg accgttggaa
5581 taacgtttct cctctcatac ctagttataa gctttttgat agttattaat atgtacattg
5641 ctgtcattct cgagaactat agtcaggcca ccgaggatgt gcaggagggt ctcaccgacg
5701 acgattacga tatgtactat gagatctggc aacagttcga tccggagggc acccagtaca
5761 tacgatacga ccagctgtcc gagttcctcg acgtgctgga gcccccgctc cagattcaca
5821 agcccaacaa gtacaaaatc atatcgatgg acatacccat ctgtcgcggt gacctcatgt
5881 actgtgtgga catactggac gcactgacca aagacttttt cgcgcgcaaa ggcaatccca
5941 ttgaggagac gggcgagatt ggtgagattg ccgccaggcc ggacaccgag ggctacgagc
6001 ccgtctcctc caccctctgg cgacagcggg aggagtactg tgcccgcctc attcaacatg
6061 cctggcgcaa gcataaaacg cgcgccgagg gcggtggtgc accgtccgac gcggaaggcg
6121 acggccccga agatggtgat gcgggtggcg gtggcggggc ggcgctgatg ctgggtgttc
6181 tggatgttcc agatgctgct ggcgatgcag caaccactgg ctcccatgac ggggcaacgg
6241 cactcgatcc cgagaccgat ccatcgggag taccggcggc agcggcggtg gccccacagc
6301 cagccggtga cggcggcgag ggaccggatg gaggagcaac agccgatccg cacgagagca
6361 atgtaaatag tccgacgatg gacggcgcga cggcgggcag cccgggcgca gggagcgctg
6421 gcagcactgg ccgacagacg gccgttctcg tggagagcga tgggtttgtg accaagaacg
6481 ggcacaaggt tgtaatacac tcgcgttcgc cgagcataac gtcgcgcacg gcggatgtct
6541 gagccaggcc tcgccccccc ctccaagatg cacgcgagta ttaggtgcag gtgcagatgc
6601 agtgcagtgg tggtgccaca acaacaacaa caacaacagc aggtgccact ggtagctgca
6661 attgcaactg caacagcagc aacaggaaga a