PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361527 6715 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X41, mRNA.
ACCESSION XM_022361527
VERSION XM_022361527.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361527.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6715
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6715
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 47 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 6 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6566
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X41"
/protein_id="XP_022217219.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSHKYTIRNGRGRFGIPGS
DRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSR
ISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDF
EIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVS
VYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVEL
FITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQE
GWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMG
ALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRV
LCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTAD
NDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGHDEI
LADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYG
SHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHAN
DEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVIT
MILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAW
CWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQ
AIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENY
TWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFV
FFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLK
AIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAI
FVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRV
VRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHV
KEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCG
SATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQF
DPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTK
DFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRA
EGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETD
PSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGR
QTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1827..2384
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2613..3248
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3324..3983
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 3993..4808
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4776..4934
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4821..4832
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4956..5708
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5739..5882
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcgacat ccttatcctt acctggttca ccgtttaaca
1861 tacgcagggg atcacgtagt tctcacaagt acacgatccg gaatggacgt ggacgctttg
1921 gtatacccgg cagcgatcgc aagccgttgg tattgtcaac atatcaggat gctcagcagc
1981 acttgcccta tgccgatgat tcgaacgctg ttacgcccat gtccgaggag aacggtgcca
2041 ttatagtgcc cgtttattat ggaaatctag gctccaggca ttcatcgtat acttcgcatc
2101 agtccagaat atcgtatacc tcacatggcg atctattggg cggcatggcc gtcatgggcg
2161 tcagcacaat gaccaaggag agcaaattgc gaaatcgcaa ctcacgcaat caatcagtgg
2221 gcgccaccaa tggcggcacc acctgcctgg accccaatca caaggtcgag catcgcgact
2281 tcgaaatcgg tctggagtgc acggacgaag ctggcaagat taaacatcat gacaatcctt
2341 ttatcgagcc cgtccagaca caaacggtag tcgacatgaa agatgtgatg gtactgaatg
2401 acattatcga acaggccgct ggtcggcaca gtcgggctag tgatcgcggt gtctccgttt
2461 actatttccc aacagaggac gatgatgagg atgggccgac attaaaagac aaggccctcg
2521 aagcgctaat gaaaggcatc gaagtgtttt gtgtgtggga ctgttgctgg gtttggttga
2581 aattgcagga gtggatatcg ctgatcgtct tcgatccctt tgtcgagctc ttcatcacgc
2641 tgtgcattgt ggtcaacacg atgttcatgg ccatggacca tcacgacatg aacaaggaga
2701 tggaacgcat ccttaagtgc ggaaattatt tcttcacggc aacattcgcc attgaggcaa
2761 ccatgaaact gtgcgccatg agccccaaat actatttcca ggagggctgg aacatctttg
2821 acttcatcat tgtggcactc tcattgctgg agctgggcct cgagggcgtt cagggcctct
2881 ccgtcttgcg ttcgtttcgt ttgctgcgtg tattcaaatt ggccaagtcc tggccaacac
2941 ttaatttact catttcgatt atgggacgca ccatgggcgc tttgggtaat ctgacatttg
3001 tactttgcat tatcatcttc atctttgcgg tgatgggaat gcaactgttc ggaaagaatt
3061 atcatgataa caaggatcgc ttcccggacg gtgacctgcc ccgctggaac ttcaccgact
3121 tcatgcacag cttcatgatc gtgtttcggg tgctatgcgg cgagtggatc gagtccatgt
3181 gggactgtat gcacgtgggc gatgtatcgt gcattccatt cttcttggcc accgttgtca
3241 tcggcaattt agtggttctt aaccttttct tagccctgct tttgtcaaat tttggttcat
3301 ctagcttatc agcgccgaca gccgataacg ataccaataa aatagccgag gccttcaatc
3361 gaattgggcg atttaaaagt tgggttaagc gtaatattgc tgattgtttc aagttaatac
3421 gtaacaaatt gacaaatcaa ataagtgatc aaccatcaga gcacggcgac aacgagctgg
3481 agctgggcca cgacgagata ctcgccgacg ggctcatcaa gaagggcatc aaggaggcga
3541 cacagctgga ggtggccatc ggtgatggca tggagttcac gatacacggc gacatgaaga
3601 acaacaagcc gaagaaatcc aaatatctaa ataacgcaac ggacgacgac actgccagca
3661 ttaactcata tggtagccat aagaatcgac cattcaagga tgagagccac aagggcagcg
3721 ccgagacgat ggagggcgag gagaagcggg acgccagcaa ggaggattta ggtatcgatg
3781 aggagctcga cgaggagggc gaattggagg agggcccgct cgacggcgat atcatcatac
3841 atgccaacga tgaggatata ctcgatgaat atccagctga ttgctgcccc gattcgtact
3901 ataagaaatt tccgatctta gccggtgatg atgactcgcc gttctggcaa ggatggggca
3961 atttacgact gaaaactttt caattaattg aaaataaata ttttgaaaca gctgttatca
4021 ctatgatttt aatgagtagc ttagctttgg cattagaaga tgtacatctg ccacaaagac
4081 ccatactgca ggatatttta tactatatgg acagaatatt tacggttata ttcttcttgg
4141 aaatgttaat caagtggctg gcgctcggct tcaaagtgta cttcacgaac gcgtggtgct
4201 ggctcgattt cgtcattgtc atggtatcgc ttatcaactt cgttgcttca cttgttggag
4261 ctggtggtat tcaagccttc aagactatgc gaacgttaag agcactgaga ccactacgtg
4321 ccatgtcccg tatgcagggc atgagggtcg tcgttaatgc gctggtacaa gctataccgt
4381 ccatcttcaa tgtgctattg gtgtgtctaa tattttggct aatttttgcc ataatgggtg
4441 tacagctttt tgctggaaaa tattttaagt gcgaggacat gaatggcacg aagctcagcc
4501 acgagatcat accaaatcgc aatgcctgcg aaagcgagaa ctacacgtgg gtgaattcag
4561 caatgaattt cgatcatgta ggtaacgcgt atctgtgcct tttccaagtg gccaccttca
4621 aaggctggat acaaatcatg aacgatgcta tcgattcacg agaggtggac aagcagccaa
4681 ttcgtgaaac gaacatctac atgtatttat atttcgtatt cttcatcata tttggatcat
4741 ttttcacact caatctgttc attggtgtta tcattgataa ttttaatgag caaaagaaaa
4801 aagcaggtgg atcattagaa atgttcatga cagaagatca gaaaaagtac tataatgcta
4861 tgaaaaagat gggctctaaa aaaccattaa aagccattcc aagaccaagg tggcgtccac
4921 aagcaatagt ctttgaaata gtaaccgata agaaattcga tatagtcata atgttattca
4981 ttggtctgaa catgttcacc atgacactcg atcgttacga tgcgtcggac acgtacaacg
5041 cggtccttga ctatctcaat gcgatattcg tagttatttt cagttccgaa tgtctattaa
5101 aaatattcgc tttacgatat cactatttta ttgagccatg gaatttattt gatgtagtag
5161 ttgtcatttt atccatctta ggtctcgtac ttagcgatat tatcgagaaa tacttcgtat
5221 cgccgacact gctccgagtg gtgcgcgtgg ccaaagtggg tcgcgtactg cgtctggtga
5281 agggcgccaa gggtatacga acgctgctgt tcgccctggc catgtcgctg ccggcgctgt
5341 tcaacatctg cctgctgctg ttcctggtca tgttcatctt cgcgatattc ggcatgtcgt
5401 tcttcatgca tgtgaaggag aagagcggca tcaacgacgt ctacaacttc aagacgttcg
5461 gacagagcat gatcctgctc tttcagatgt ctacctcagc cggttgggat ggtgtactcg
5521 acgccattat caatgaggaa gcatgcgatc cacccgacaa cgacaaaggc tatccgggca
5581 attgtggttc agcgaccgtt ggaataacgt ttctcctctc atacctagtt ataagctttt
5641 tgatagttat taatatgtac attgctgtca ttctcgagaa ctatagtcag gccaccgagg
5701 atgtgcagga gggtctcacc gacgacgatt acgatatgta ctatgagatc tggcaacagt
5761 tcgatccgga gggcacccag tacatacgat acgaccagct gtccgagttc ctcgacgtgc
5821 tggagccccc gctccagatt cacaagccca acaagtacaa aatcatatcg atggacatac
5881 ccatctgtcg cggtgacctc atgtactgtg tggacatact ggacgcactg accaaagact
5941 ttttcgcgcg caaaggcaat cccattgagg agacgggcga gattggtgag attgccgcca
6001 ggccggacac cgagggctac gagcccgtct cctccaccct ctggcgacag cgggaggagt
6061 actgtgcccg cctcattcaa catgcctggc gcaagcataa aacgcgcgcc gagggcggtg
6121 gtgcaccgtc cgacgcggaa ggcgacggcc ccgaagatgg tgatgcgggt ggcggtggcg
6181 gggcggcgct gatgctgggt gttctggatg ttccagatgc tgctggcgat gcagcaacca
6241 ctggctccca tgacggggca acggcactcg atcccgagac cgatccatcg ggagtaccgg
6301 cggcagcggc ggtggcccca cagccagccg gtgacggcgg cgagggaccg gatggaggag
6361 caacagccga tccgcacgag agcaatgtaa atagtccgac gatggacggc gcgacggcgg
6421 gcagcccggg cgcagggagc gctggcagca ctggccgaca gacggccgtt ctcgtggaga
6481 gcgatgggtt tgtgaccaag aacgggcaca aggttgtaat acactcgcgt tcgccgagca
6541 taacgtcgcg cacggcggat gtctgagcca ggcctcgccc ccccctccaa gatgcacgcg
6601 agtattaggt gcaggtgcag atgcagtgca gtggtggtgc cacaacaaca acaacaacaa
6661 cagcaggtgc cactggtagc tgcaattgca actgcaacag cagcaacagg aagaa