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LOCUS XM_022361527 6715 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X41, mRNA. ACCESSION XM_022361527 VERSION XM_022361527.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361527.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6715 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6715 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6566 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X41" /protein_id="XP_022217219.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSHKYTIRNGRGRFGIPGS DRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSR ISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDF EIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVS VYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVEL FITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQE GWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMG ALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRV LCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTAD NDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGHDEI LADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYG SHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHAN DEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVIT MILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAW CWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQ AIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENY TWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFV FFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLK AIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAI FVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRV VRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHV KEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCG SATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQF DPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTK DFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRA EGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETD PSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGR QTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1827..2384 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2613..3248 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3324..3983 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 3993..4808 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4776..4934 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4821..4832 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4956..5708 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5739..5882 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcgacat ccttatcctt acctggttca ccgtttaaca 1861 tacgcagggg atcacgtagt tctcacaagt acacgatccg gaatggacgt ggacgctttg 1921 gtatacccgg cagcgatcgc aagccgttgg tattgtcaac atatcaggat gctcagcagc 1981 acttgcccta tgccgatgat tcgaacgctg ttacgcccat gtccgaggag aacggtgcca 2041 ttatagtgcc cgtttattat ggaaatctag gctccaggca ttcatcgtat acttcgcatc 2101 agtccagaat atcgtatacc tcacatggcg atctattggg cggcatggcc gtcatgggcg 2161 tcagcacaat gaccaaggag agcaaattgc gaaatcgcaa ctcacgcaat caatcagtgg 2221 gcgccaccaa tggcggcacc acctgcctgg accccaatca caaggtcgag catcgcgact 2281 tcgaaatcgg tctggagtgc acggacgaag ctggcaagat taaacatcat gacaatcctt 2341 ttatcgagcc cgtccagaca caaacggtag tcgacatgaa agatgtgatg gtactgaatg 2401 acattatcga acaggccgct ggtcggcaca gtcgggctag tgatcgcggt gtctccgttt 2461 actatttccc aacagaggac gatgatgagg atgggccgac attaaaagac aaggccctcg 2521 aagcgctaat gaaaggcatc gaagtgtttt gtgtgtggga ctgttgctgg gtttggttga 2581 aattgcagga gtggatatcg ctgatcgtct tcgatccctt tgtcgagctc ttcatcacgc 2641 tgtgcattgt ggtcaacacg atgttcatgg ccatggacca tcacgacatg aacaaggaga 2701 tggaacgcat ccttaagtgc ggaaattatt tcttcacggc aacattcgcc attgaggcaa 2761 ccatgaaact gtgcgccatg agccccaaat actatttcca ggagggctgg aacatctttg 2821 acttcatcat tgtggcactc tcattgctgg agctgggcct cgagggcgtt cagggcctct 2881 ccgtcttgcg ttcgtttcgt ttgctgcgtg tattcaaatt ggccaagtcc tggccaacac 2941 ttaatttact catttcgatt atgggacgca ccatgggcgc tttgggtaat ctgacatttg 3001 tactttgcat tatcatcttc atctttgcgg tgatgggaat gcaactgttc ggaaagaatt 3061 atcatgataa caaggatcgc ttcccggacg gtgacctgcc ccgctggaac ttcaccgact 3121 tcatgcacag cttcatgatc gtgtttcggg tgctatgcgg cgagtggatc gagtccatgt 3181 gggactgtat gcacgtgggc gatgtatcgt gcattccatt cttcttggcc accgttgtca 3241 tcggcaattt agtggttctt aaccttttct tagccctgct tttgtcaaat tttggttcat 3301 ctagcttatc agcgccgaca gccgataacg ataccaataa aatagccgag gccttcaatc 3361 gaattgggcg atttaaaagt tgggttaagc gtaatattgc tgattgtttc aagttaatac 3421 gtaacaaatt gacaaatcaa ataagtgatc aaccatcaga gcacggcgac aacgagctgg 3481 agctgggcca cgacgagata ctcgccgacg ggctcatcaa gaagggcatc aaggaggcga 3541 cacagctgga ggtggccatc ggtgatggca tggagttcac gatacacggc gacatgaaga 3601 acaacaagcc gaagaaatcc aaatatctaa ataacgcaac ggacgacgac actgccagca 3661 ttaactcata tggtagccat aagaatcgac cattcaagga tgagagccac aagggcagcg 3721 ccgagacgat ggagggcgag gagaagcggg acgccagcaa ggaggattta ggtatcgatg 3781 aggagctcga cgaggagggc gaattggagg agggcccgct cgacggcgat atcatcatac 3841 atgccaacga tgaggatata ctcgatgaat atccagctga ttgctgcccc gattcgtact 3901 ataagaaatt tccgatctta gccggtgatg atgactcgcc gttctggcaa ggatggggca 3961 atttacgact gaaaactttt caattaattg aaaataaata ttttgaaaca gctgttatca 4021 ctatgatttt aatgagtagc ttagctttgg cattagaaga tgtacatctg ccacaaagac 4081 ccatactgca ggatatttta tactatatgg acagaatatt tacggttata ttcttcttgg 4141 aaatgttaat caagtggctg gcgctcggct tcaaagtgta cttcacgaac gcgtggtgct 4201 ggctcgattt cgtcattgtc atggtatcgc ttatcaactt cgttgcttca cttgttggag 4261 ctggtggtat tcaagccttc aagactatgc gaacgttaag agcactgaga ccactacgtg 4321 ccatgtcccg tatgcagggc atgagggtcg tcgttaatgc gctggtacaa gctataccgt 4381 ccatcttcaa tgtgctattg gtgtgtctaa tattttggct aatttttgcc ataatgggtg 4441 tacagctttt tgctggaaaa tattttaagt gcgaggacat gaatggcacg aagctcagcc 4501 acgagatcat accaaatcgc aatgcctgcg aaagcgagaa ctacacgtgg gtgaattcag 4561 caatgaattt cgatcatgta ggtaacgcgt atctgtgcct tttccaagtg gccaccttca 4621 aaggctggat acaaatcatg aacgatgcta tcgattcacg agaggtggac aagcagccaa 4681 ttcgtgaaac gaacatctac atgtatttat atttcgtatt cttcatcata tttggatcat 4741 ttttcacact caatctgttc attggtgtta tcattgataa ttttaatgag caaaagaaaa 4801 aagcaggtgg atcattagaa atgttcatga cagaagatca gaaaaagtac tataatgcta 4861 tgaaaaagat gggctctaaa aaaccattaa aagccattcc aagaccaagg tggcgtccac 4921 aagcaatagt ctttgaaata gtaaccgata agaaattcga tatagtcata atgttattca 4981 ttggtctgaa catgttcacc atgacactcg atcgttacga tgcgtcggac acgtacaacg 5041 cggtccttga ctatctcaat gcgatattcg tagttatttt cagttccgaa tgtctattaa 5101 aaatattcgc tttacgatat cactatttta ttgagccatg gaatttattt gatgtagtag 5161 ttgtcatttt atccatctta ggtctcgtac ttagcgatat tatcgagaaa tacttcgtat 5221 cgccgacact gctccgagtg gtgcgcgtgg ccaaagtggg tcgcgtactg cgtctggtga 5281 agggcgccaa gggtatacga acgctgctgt tcgccctggc catgtcgctg ccggcgctgt 5341 tcaacatctg cctgctgctg ttcctggtca tgttcatctt cgcgatattc ggcatgtcgt 5401 tcttcatgca tgtgaaggag aagagcggca tcaacgacgt ctacaacttc aagacgttcg 5461 gacagagcat gatcctgctc tttcagatgt ctacctcagc cggttgggat ggtgtactcg 5521 acgccattat caatgaggaa gcatgcgatc cacccgacaa cgacaaaggc tatccgggca 5581 attgtggttc agcgaccgtt ggaataacgt ttctcctctc atacctagtt ataagctttt 5641 tgatagttat taatatgtac attgctgtca ttctcgagaa ctatagtcag gccaccgagg 5701 atgtgcagga gggtctcacc gacgacgatt acgatatgta ctatgagatc tggcaacagt 5761 tcgatccgga gggcacccag tacatacgat acgaccagct gtccgagttc ctcgacgtgc 5821 tggagccccc gctccagatt cacaagccca acaagtacaa aatcatatcg atggacatac 5881 ccatctgtcg cggtgacctc atgtactgtg tggacatact ggacgcactg accaaagact 5941 ttttcgcgcg caaaggcaat cccattgagg agacgggcga gattggtgag attgccgcca 6001 ggccggacac cgagggctac gagcccgtct cctccaccct ctggcgacag cgggaggagt 6061 actgtgcccg cctcattcaa catgcctggc gcaagcataa aacgcgcgcc gagggcggtg 6121 gtgcaccgtc cgacgcggaa ggcgacggcc ccgaagatgg tgatgcgggt ggcggtggcg 6181 gggcggcgct gatgctgggt gttctggatg ttccagatgc tgctggcgat gcagcaacca 6241 ctggctccca tgacggggca acggcactcg atcccgagac cgatccatcg ggagtaccgg 6301 cggcagcggc ggtggcccca cagccagccg gtgacggcgg cgagggaccg gatggaggag 6361 caacagccga tccgcacgag agcaatgtaa atagtccgac gatggacggc gcgacggcgg 6421 gcagcccggg cgcagggagc gctggcagca ctggccgaca gacggccgtt ctcgtggaga 6481 gcgatgggtt tgtgaccaag aacgggcaca aggttgtaat acactcgcgt tcgccgagca 6541 taacgtcgcg cacggcggat gtctgagcca ggcctcgccc ccccctccaa gatgcacgcg 6601 agtattaggt gcaggtgcag atgcagtgca gtggtggtgc cacaacaaca acaacaacaa 6661 cagcaggtgc cactggtagc tgcaattgca actgcaacag cagcaacagg aagaa