PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361525 6721 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X40, mRNA.
ACCESSION XM_022361525
VERSION XM_022361525.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361525.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6721
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6721
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 46 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 5 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6572
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X40"
/protein_id="XP_022217217.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL
TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI
MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM
GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL
MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS
GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP
WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA
AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM
SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLS
TYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGD
LLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFEIGLECTD
EAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED
DDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV
NTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI
IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV
LCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES
MWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE
AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCISAEHGDNELELGHD
EILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINS
YGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIH
ANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAV
ITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTN
AWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNAL
VQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESE
NYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLY
FVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKP
LKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLL
RVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFM
HVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGN
CGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQ
QFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDAL
TKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKT
RAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPE
TDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGST
GRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 657..1511
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1860..2360
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2589..3224
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3300..3989
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 3999..4814
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4782..4940
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4827..4838
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4962..5714
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5745..5888
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc
421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct
481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac
541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa
601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc
661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc
721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat
781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg
841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt
901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca
961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg
1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct
1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca
1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag
1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg
1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt
1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc
1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca
1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg
1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag
1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc
1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga
1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg
1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg
1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga
1861 gcacgtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc
1921 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga
1981 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa
2041 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac
2101 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca
2161 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct
2221 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg
2281 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa
2341 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc
2401 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg
2461 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag
2521 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga
2581 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt
2641 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa
2701 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc
2761 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat
2821 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc
2881 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg
2941 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct
3001 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc
3061 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt
3121 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg
3181 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc
3241 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg
3301 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg
3361 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa
3421 gtgatcaacc atcaggcaaa ggcgtttgtc gttgtatatc tgcagagcac ggcgacaacg
3481 agctggagct gggccacgac gagatactcg ccgacgggct catcaagaag ggcatcaagg
3541 aggcgacaca gctggaggtg gccatcggtg atggcatgga gttcacgata cacggcgaca
3601 tgaagaacaa caagccgaag aaatccaaat atctaaataa cgcaacggac gacgacactg
3661 ccagcattaa ctcatatggt agccataaga atcgaccatt caaggatgag agccacaagg
3721 gcagcgccga gacgatggag ggcgaggaga agcgggacgc cagcaaggag gatttaggta
3781 tcgatgagga gctcgacgag gagggcgaat tggaggaggg cccgctcgac ggcgatatca
3841 tcatacatgc caacgatgag gatatactcg atgaatatcc agctgattgc tgccccgatt
3901 cgtactataa gaaatttccg atcttagccg gtgatgatga ctcgccgttc tggcaaggat
3961 ggggcaattt acgactgaaa acttttcaat taattgaaaa taaatatttt gaaacagctg
4021 ttatcactat gattttaatg agtagcttag ctttggcatt agaagatgta catctgccac
4081 aaagacccat actgcaggat attttatact atatggacag aatatttacg gttatattct
4141 tcttggaaat gttaatcaag tggctggcgc tcggcttcaa agtgtacttc acgaacgcgt
4201 ggtgctggct cgatttcgtc attgtcatgg tatcgcttat caacttcgtt gcttcacttg
4261 ttggagctgg tggtattcaa gccttcaaga ctatgcgaac gttaagagca ctgagaccac
4321 tacgtgccat gtcccgtatg cagggcatga gggtcgtcgt taatgcgctg gtacaagcta
4381 taccgtccat cttcaatgtg ctattggtgt gtctaatatt ttggctaatt tttgccataa
4441 tgggtgtaca gctttttgct ggaaaatatt ttaagtgcga ggacatgaat ggcacgaagc
4501 tcagccacga gatcatacca aatcgcaatg cctgcgaaag cgagaactac acgtgggtga
4561 attcagcaat gaatttcgat catgtaggta acgcgtatct gtgccttttc caagtggcca
4621 ccttcaaagg ctggatacaa atcatgaacg atgctatcga ttcacgagag gtggacaagc
4681 agccaattcg tgaaacgaac atctacatgt atttatattt cgtattcttc atcatatttg
4741 gatcattttt cacactcaat ctgttcattg gtgttatcat tgataatttt aatgagcaaa
4801 agaaaaaagc aggtggatca ttagaaatgt tcatgacaga agatcagaaa aagtactata
4861 atgctatgaa aaagatgggc tctaaaaaac cattaaaagc cattccaaga ccaaggtggc
4921 gtccacaagc aatagtcttt gaaatagtaa ccgataagaa attcgatata gtcataatgt
4981 tattcattgg tctgaacatg ttcaccatga cactcgatcg ttacgatgcg tcggacacgt
5041 acaacgcggt ccttgactat ctcaatgcga tattcgtagt tattttcagt tccgaatgtc
5101 tattaaaaat attcgcttta cgatatcact attttattga gccatggaat ttatttgatg
5161 tagtagttgt cattttatcc atcttaggtc tcgtacttag cgatattatc gagaaatact
5221 tcgtatcgcc gacactgctc cgagtggtgc gcgtggccaa agtgggtcgc gtactgcgtc
5281 tggtgaaggg cgccaagggt atacgaacgc tgctgttcgc cctggccatg tcgctgccgg
5341 cgctgttcaa catctgcctg ctgctgttcc tggtcatgtt catcttcgcg atattcggca
5401 tgtcgttctt catgcatgtg aaggagaaga gcggcatcaa cgacgtctac aacttcaaga
5461 cgttcggaca gagcatgatc ctgctctttc agatgtctac ctcagccggt tgggatggtg
5521 tactcgacgc cattatcaat gaggaagcat gcgatccacc cgacaacgac aaaggctatc
5581 cgggcaattg tggttcagcg accgttggaa taacgtttct cctctcatac ctagttataa
5641 gctttttgat agttattaat atgtacattg ctgtcattct cgagaactat agtcaggcca
5701 ccgaggatgt gcaggagggt ctcaccgacg acgattacga tatgtactat gagatctggc
5761 aacagttcga tccggagggc acccagtaca tacgatacga ccagctgtcc gagttcctcg
5821 acgtgctgga gcccccgctc cagattcaca agcccaacaa gtacaaaatc atatcgatgg
5881 acatacccat ctgtcgcggt gacctcatgt actgtgtgga catactggac gcactgacca
5941 aagacttttt cgcgcgcaaa ggcaatccca ttgaggagac gggcgagatt ggtgagattg
6001 ccgccaggcc ggacaccgag ggctacgagc ccgtctcctc caccctctgg cgacagcggg
6061 aggagtactg tgcccgcctc attcaacatg cctggcgcaa gcataaaacg cgcgccgagg
6121 gcggtggtgc accgtccgac gcggaaggcg acggccccga agatggtgat gcgggtggcg
6181 gtggcggggc ggcgctgatg ctgggtgttc tggatgttcc agatgctgct ggcgatgcag
6241 caaccactgg ctcccatgac ggggcaacgg cactcgatcc cgagaccgat ccatcgggag
6301 taccggcggc agcggcggtg gccccacagc cagccggtga cggcggcgag ggaccggatg
6361 gaggagcaac agccgatccg cacgagagca atgtaaatag tccgacgatg gacggcgcga
6421 cggcgggcag cccgggcgca gggagcgctg gcagcactgg ccgacagacg gccgttctcg
6481 tggagagcga tgggtttgtg accaagaacg ggcacaaggt tgtaatacac tcgcgttcgc
6541 cgagcataac gtcgcgcacg gcggatgtct gagccaggcc tcgccccccc ctccaagatg
6601 cacgcgagta ttaggtgcag gtgcagatgc agtgcagtgg tggtgccaca acaacaacaa
6661 caacaacagc aggtgccact ggtagctgca attgcaactg caacagcagc aacaggaaga
6721 a