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LOCUS XM_022361525 6721 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X40, mRNA. ACCESSION XM_022361525 VERSION XM_022361525.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361525.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6721 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6721 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6572 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X40" /protein_id="XP_022217217.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLS TYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGD LLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFEIGLECTD EAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED DDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV NTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV LCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES MWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCISAEHGDNELELGHD EILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINS YGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIH ANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAV ITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTN AWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNAL VQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESE NYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLY FVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKP LKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLL RVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFM HVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGN CGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQ QFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDAL TKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKT RAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPE TDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGST GRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 657..1511 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1860..2360 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2589..3224 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3300..3989 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 3999..4814 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4782..4940 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4827..4838 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4962..5714 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5745..5888 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc 421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct 481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac 541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa 601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc 661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc 721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat 781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg 841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt 901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca 961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg 1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct 1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca 1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag 1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg 1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt 1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc 1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca 1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg 1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag 1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc 1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga 1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg 1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg 1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga 1861 gcacgtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc 1921 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga 1981 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa 2041 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac 2101 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca 2161 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct 2221 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg 2281 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa 2341 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc 2401 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg 2461 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag 2521 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga 2581 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt 2641 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa 2701 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc 2761 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat 2821 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc 2881 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg 2941 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct 3001 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc 3061 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt 3121 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg 3181 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc 3241 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg 3301 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg 3361 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa 3421 gtgatcaacc atcaggcaaa ggcgtttgtc gttgtatatc tgcagagcac ggcgacaacg 3481 agctggagct gggccacgac gagatactcg ccgacgggct catcaagaag ggcatcaagg 3541 aggcgacaca gctggaggtg gccatcggtg atggcatgga gttcacgata cacggcgaca 3601 tgaagaacaa caagccgaag aaatccaaat atctaaataa cgcaacggac gacgacactg 3661 ccagcattaa ctcatatggt agccataaga atcgaccatt caaggatgag agccacaagg 3721 gcagcgccga gacgatggag ggcgaggaga agcgggacgc cagcaaggag gatttaggta 3781 tcgatgagga gctcgacgag gagggcgaat tggaggaggg cccgctcgac ggcgatatca 3841 tcatacatgc caacgatgag gatatactcg atgaatatcc agctgattgc tgccccgatt 3901 cgtactataa gaaatttccg atcttagccg gtgatgatga ctcgccgttc tggcaaggat 3961 ggggcaattt acgactgaaa acttttcaat taattgaaaa taaatatttt gaaacagctg 4021 ttatcactat gattttaatg agtagcttag ctttggcatt agaagatgta catctgccac 4081 aaagacccat actgcaggat attttatact atatggacag aatatttacg gttatattct 4141 tcttggaaat gttaatcaag tggctggcgc tcggcttcaa agtgtacttc acgaacgcgt 4201 ggtgctggct cgatttcgtc attgtcatgg tatcgcttat caacttcgtt gcttcacttg 4261 ttggagctgg tggtattcaa gccttcaaga ctatgcgaac gttaagagca ctgagaccac 4321 tacgtgccat gtcccgtatg cagggcatga gggtcgtcgt taatgcgctg gtacaagcta 4381 taccgtccat cttcaatgtg ctattggtgt gtctaatatt ttggctaatt tttgccataa 4441 tgggtgtaca gctttttgct ggaaaatatt ttaagtgcga ggacatgaat ggcacgaagc 4501 tcagccacga gatcatacca aatcgcaatg cctgcgaaag cgagaactac acgtgggtga 4561 attcagcaat gaatttcgat catgtaggta acgcgtatct gtgccttttc caagtggcca 4621 ccttcaaagg ctggatacaa atcatgaacg atgctatcga ttcacgagag gtggacaagc 4681 agccaattcg tgaaacgaac atctacatgt atttatattt cgtattcttc atcatatttg 4741 gatcattttt cacactcaat ctgttcattg gtgttatcat tgataatttt aatgagcaaa 4801 agaaaaaagc aggtggatca ttagaaatgt tcatgacaga agatcagaaa aagtactata 4861 atgctatgaa aaagatgggc tctaaaaaac cattaaaagc cattccaaga ccaaggtggc 4921 gtccacaagc aatagtcttt gaaatagtaa ccgataagaa attcgatata gtcataatgt 4981 tattcattgg tctgaacatg ttcaccatga cactcgatcg ttacgatgcg tcggacacgt 5041 acaacgcggt ccttgactat ctcaatgcga tattcgtagt tattttcagt tccgaatgtc 5101 tattaaaaat attcgcttta cgatatcact attttattga gccatggaat ttatttgatg 5161 tagtagttgt cattttatcc atcttaggtc tcgtacttag cgatattatc gagaaatact 5221 tcgtatcgcc gacactgctc cgagtggtgc gcgtggccaa agtgggtcgc gtactgcgtc 5281 tggtgaaggg cgccaagggt atacgaacgc tgctgttcgc cctggccatg tcgctgccgg 5341 cgctgttcaa catctgcctg ctgctgttcc tggtcatgtt catcttcgcg atattcggca 5401 tgtcgttctt catgcatgtg aaggagaaga gcggcatcaa cgacgtctac aacttcaaga 5461 cgttcggaca gagcatgatc ctgctctttc agatgtctac ctcagccggt tgggatggtg 5521 tactcgacgc cattatcaat gaggaagcat gcgatccacc cgacaacgac aaaggctatc 5581 cgggcaattg tggttcagcg accgttggaa taacgtttct cctctcatac ctagttataa 5641 gctttttgat agttattaat atgtacattg ctgtcattct cgagaactat agtcaggcca 5701 ccgaggatgt gcaggagggt ctcaccgacg acgattacga tatgtactat gagatctggc 5761 aacagttcga tccggagggc acccagtaca tacgatacga ccagctgtcc gagttcctcg 5821 acgtgctgga gcccccgctc cagattcaca agcccaacaa gtacaaaatc atatcgatgg 5881 acatacccat ctgtcgcggt gacctcatgt actgtgtgga catactggac gcactgacca 5941 aagacttttt cgcgcgcaaa ggcaatccca ttgaggagac gggcgagatt ggtgagattg 6001 ccgccaggcc ggacaccgag ggctacgagc ccgtctcctc caccctctgg cgacagcggg 6061 aggagtactg tgcccgcctc attcaacatg cctggcgcaa gcataaaacg cgcgccgagg 6121 gcggtggtgc accgtccgac gcggaaggcg acggccccga agatggtgat gcgggtggcg 6181 gtggcggggc ggcgctgatg ctgggtgttc tggatgttcc agatgctgct ggcgatgcag 6241 caaccactgg ctcccatgac ggggcaacgg cactcgatcc cgagaccgat ccatcgggag 6301 taccggcggc agcggcggtg gccccacagc cagccggtga cggcggcgag ggaccggatg 6361 gaggagcaac agccgatccg cacgagagca atgtaaatag tccgacgatg gacggcgcga 6421 cggcgggcag cccgggcgca gggagcgctg gcagcactgg ccgacagacg gccgttctcg 6481 tggagagcga tgggtttgtg accaagaacg ggcacaaggt tgtaatacac tcgcgttcgc 6541 cgagcataac gtcgcgcacg gcggatgtct gagccaggcc tcgccccccc ctccaagatg 6601 cacgcgagta ttaggtgcag gtgcagatgc agtgcagtgg tggtgccaca acaacaacaa 6661 caacaacagc aggtgccact ggtagctgca attgcaactg caacagcagc aacaggaaga 6721 a