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LOCUS XM_022361524 6724 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X39, mRNA. ACCESSION XM_022361524 VERSION XM_022361524.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361524.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6724 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6724 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6575 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X39" /protein_id="XP_022217216.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEH RDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR GVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPF VELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYY FQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGR TMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIV FRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAP TADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGH DEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASIN SYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIII HANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETA VITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNA LVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACES ENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYL YFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKK PLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYL NAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTL LRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFF MHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPG NCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIW QQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDA LTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHK TRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDP ETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGS TGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1893..2393 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2622..3257 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3333..3992 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4002..4817 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4785..4943 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4830..4841 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4965..5717 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5748..5891 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgta cacgatccgg aatggacgtg 1921 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 1981 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2041 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2101 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2161 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2221 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2281 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2341 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2401 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2461 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca 2521 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg 2581 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct 2641 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga 2701 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca 2761 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga 2821 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc 2881 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct 2941 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc 3001 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg 3061 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact 3121 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg 3181 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca 3241 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt 3301 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg 3361 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca 3421 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcagag cacggcgaca 3481 acgagctgga gctgggccac gacgagatac tcgccgacgg gctcatcaag aagggcatca 3541 aggaggcgac acagctggag gtggccatcg gtgatggcat ggagttcacg atacacggcg 3601 acatgaagaa caacaagccg aagaaatcca aatatctaaa taacgcaacg gacgacgaca 3661 ctgccagcat taactcatat ggtagccata agaatcgacc attcaaggat gagagccaca 3721 agggcagcgc cgagacgatg gagggcgagg agaagcggga cgccagcaag gaggatttag 3781 gtatcgatga ggagctcgac gaggagggcg aattggagga gggcccgctc gacggcgata 3841 tcatcataca tgccaacgat gaggatatac tcgatgaata tccagctgat tgctgccccg 3901 attcgtacta taagaaattt ccgatcttag ccggtgatga tgactcgccg ttctggcaag 3961 gatggggcaa tttacgactg aaaacttttc aattaattga aaataaatat tttgaaacag 4021 ctgttatcac tatgatttta atgagtagct tagctttggc attagaagat gtacatctgc 4081 cacaaagacc catactgcag gatattttat actatatgga cagaatattt acggttatat 4141 tcttcttgga aatgttaatc aagtggctgg cgctcggctt caaagtgtac ttcacgaacg 4201 cgtggtgctg gctcgatttc gtcattgtca tggtatcgct tatcaacttc gttgcttcac 4261 ttgttggagc tggtggtatt caagccttca agactatgcg aacgttaaga gcactgagac 4321 cactacgtgc catgtcccgt atgcagggca tgagggtcgt cgttaatgcg ctggtacaag 4381 ctataccgtc catcttcaat gtgctattgg tgtgtctaat attttggcta atttttgcca 4441 taatgggtgt acagcttttt gctggaaaat attttaagtg cgaggacatg aatggcacga 4501 agctcagcca cgagatcata ccaaatcgca atgcctgcga aagcgagaac tacacgtggg 4561 tgaattcagc aatgaatttc gatcatgtag gtaacgcgta tctgtgcctt ttccaagtgg 4621 ccaccttcaa aggctggata caaatcatga acgatgctat cgattcacga gaggtggaca 4681 agcagccaat tcgtgaaacg aacatctaca tgtatttata tttcgtattc ttcatcatat 4741 ttggatcatt tttcacactc aatctgttca ttggtgttat cattgataat tttaatgagc 4801 aaaagaaaaa agcaggtgga tcattagaaa tgttcatgac agaagatcag aaaaagtact 4861 ataatgctat gaaaaagatg ggctctaaaa aaccattaaa agccattcca agaccaaggt 4921 ggcgtccaca agcaatagtc tttgaaatag taaccgataa gaaattcgat atagtcataa 4981 tgttattcat tggtctgaac atgttcacca tgacactcga tcgttacgat gcgtcggaca 5041 cgtacaacgc ggtccttgac tatctcaatg cgatattcgt agttattttc agttccgaat 5101 gtctattaaa aatattcgct ttacgatatc actattttat tgagccatgg aatttatttg 5161 atgtagtagt tgtcatttta tccatcttag gtctcgtact tagcgatatt atcgagaaat 5221 acttcgtatc gccgacactg ctccgagtgg tgcgcgtggc caaagtgggt cgcgtactgc 5281 gtctggtgaa gggcgccaag ggtatacgaa cgctgctgtt cgccctggcc atgtcgctgc 5341 cggcgctgtt caacatctgc ctgctgctgt tcctggtcat gttcatcttc gcgatattcg 5401 gcatgtcgtt cttcatgcat gtgaaggaga agagcggcat caacgacgtc tacaacttca 5461 agacgttcgg acagagcatg atcctgctct ttcagatgtc tacctcagcc ggttgggatg 5521 gtgtactcga cgccattatc aatgaggaag catgcgatcc acccgacaac gacaaaggct 5581 atccgggcaa ttgtggttca gcgaccgttg gaataacgtt tctcctctca tacctagtta 5641 taagcttttt gatagttatt aatatgtaca ttgctgtcat tctcgagaac tatagtcagg 5701 ccaccgagga tgtgcaggag ggtctcaccg acgacgatta cgatatgtac tatgagatct 5761 ggcaacagtt cgatccggag ggcacccagt acatacgata cgaccagctg tccgagttcc 5821 tcgacgtgct ggagcccccg ctccagattc acaagcccaa caagtacaaa atcatatcga 5881 tggacatacc catctgtcgc ggtgacctca tgtactgtgt ggacatactg gacgcactga 5941 ccaaagactt tttcgcgcgc aaaggcaatc ccattgagga gacgggcgag attggtgaga 6001 ttgccgccag gccggacacc gagggctacg agcccgtctc ctccaccctc tggcgacagc 6061 gggaggagta ctgtgcccgc ctcattcaac atgcctggcg caagcataaa acgcgcgccg 6121 agggcggtgg tgcaccgtcc gacgcggaag gcgacggccc cgaagatggt gatgcgggtg 6181 gcggtggcgg ggcggcgctg atgctgggtg ttctggatgt tccagatgct gctggcgatg 6241 cagcaaccac tggctcccat gacggggcaa cggcactcga tcccgagacc gatccatcgg 6301 gagtaccggc ggcagcggcg gtggccccac agccagccgg tgacggcggc gagggaccgg 6361 atggaggagc aacagccgat ccgcacgaga gcaatgtaaa tagtccgacg atggacggcg 6421 cgacggcggg cagcccgggc gcagggagcg ctggcagcac tggccgacag acggccgttc 6481 tcgtggagag cgatgggttt gtgaccaaga acgggcacaa ggttgtaata cactcgcgtt 6541 cgccgagcat aacgtcgcgc acggcggatg tctgagccag gcctcgcccc cccctccaag 6601 atgcacgcga gtattaggtg caggtgcaga tgcagtgcag tggtggtgcc acaacaacaa 6661 caacaacaac agcaggtgcc actggtagct gcaattgcaa ctgcaacagc agcaacagga 6721 agaa