PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361524 6724 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X39, mRNA.
ACCESSION XM_022361524
VERSION XM_022361524.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361524.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6724
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6724
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 48 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 8 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6575
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X39"
/protein_id="XP_022217216.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI
PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH
QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEH
RDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR
GVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPF
VELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYY
FQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGR
TMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIV
FRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAP
TADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGH
DEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASIN
SYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIII
HANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETA
VITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFT
NAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNA
LVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACES
ENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYL
YFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKK
PLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYL
NAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTL
LRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFF
MHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPG
NCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIW
QQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDA
LTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHK
TRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDP
ETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGS
TGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1893..2393
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2622..3257
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3333..3992
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4002..4817
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4785..4943
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4830..4841
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4965..5717
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5748..5891
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca
1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgta cacgatccgg aatggacgtg
1921 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg
1981 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga
2041 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata
2101 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg
2161 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc
2221 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc
2281 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg
2341 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg
2401 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg
2461 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca
2521 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg
2581 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct
2641 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga
2701 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca
2761 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga
2821 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc
2881 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct
2941 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc
3001 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg
3061 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact
3121 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg
3181 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca
3241 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt
3301 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg
3361 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca
3421 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcagag cacggcgaca
3481 acgagctgga gctgggccac gacgagatac tcgccgacgg gctcatcaag aagggcatca
3541 aggaggcgac acagctggag gtggccatcg gtgatggcat ggagttcacg atacacggcg
3601 acatgaagaa caacaagccg aagaaatcca aatatctaaa taacgcaacg gacgacgaca
3661 ctgccagcat taactcatat ggtagccata agaatcgacc attcaaggat gagagccaca
3721 agggcagcgc cgagacgatg gagggcgagg agaagcggga cgccagcaag gaggatttag
3781 gtatcgatga ggagctcgac gaggagggcg aattggagga gggcccgctc gacggcgata
3841 tcatcataca tgccaacgat gaggatatac tcgatgaata tccagctgat tgctgccccg
3901 attcgtacta taagaaattt ccgatcttag ccggtgatga tgactcgccg ttctggcaag
3961 gatggggcaa tttacgactg aaaacttttc aattaattga aaataaatat tttgaaacag
4021 ctgttatcac tatgatttta atgagtagct tagctttggc attagaagat gtacatctgc
4081 cacaaagacc catactgcag gatattttat actatatgga cagaatattt acggttatat
4141 tcttcttgga aatgttaatc aagtggctgg cgctcggctt caaagtgtac ttcacgaacg
4201 cgtggtgctg gctcgatttc gtcattgtca tggtatcgct tatcaacttc gttgcttcac
4261 ttgttggagc tggtggtatt caagccttca agactatgcg aacgttaaga gcactgagac
4321 cactacgtgc catgtcccgt atgcagggca tgagggtcgt cgttaatgcg ctggtacaag
4381 ctataccgtc catcttcaat gtgctattgg tgtgtctaat attttggcta atttttgcca
4441 taatgggtgt acagcttttt gctggaaaat attttaagtg cgaggacatg aatggcacga
4501 agctcagcca cgagatcata ccaaatcgca atgcctgcga aagcgagaac tacacgtggg
4561 tgaattcagc aatgaatttc gatcatgtag gtaacgcgta tctgtgcctt ttccaagtgg
4621 ccaccttcaa aggctggata caaatcatga acgatgctat cgattcacga gaggtggaca
4681 agcagccaat tcgtgaaacg aacatctaca tgtatttata tttcgtattc ttcatcatat
4741 ttggatcatt tttcacactc aatctgttca ttggtgttat cattgataat tttaatgagc
4801 aaaagaaaaa agcaggtgga tcattagaaa tgttcatgac agaagatcag aaaaagtact
4861 ataatgctat gaaaaagatg ggctctaaaa aaccattaaa agccattcca agaccaaggt
4921 ggcgtccaca agcaatagtc tttgaaatag taaccgataa gaaattcgat atagtcataa
4981 tgttattcat tggtctgaac atgttcacca tgacactcga tcgttacgat gcgtcggaca
5041 cgtacaacgc ggtccttgac tatctcaatg cgatattcgt agttattttc agttccgaat
5101 gtctattaaa aatattcgct ttacgatatc actattttat tgagccatgg aatttatttg
5161 atgtagtagt tgtcatttta tccatcttag gtctcgtact tagcgatatt atcgagaaat
5221 acttcgtatc gccgacactg ctccgagtgg tgcgcgtggc caaagtgggt cgcgtactgc
5281 gtctggtgaa gggcgccaag ggtatacgaa cgctgctgtt cgccctggcc atgtcgctgc
5341 cggcgctgtt caacatctgc ctgctgctgt tcctggtcat gttcatcttc gcgatattcg
5401 gcatgtcgtt cttcatgcat gtgaaggaga agagcggcat caacgacgtc tacaacttca
5461 agacgttcgg acagagcatg atcctgctct ttcagatgtc tacctcagcc ggttgggatg
5521 gtgtactcga cgccattatc aatgaggaag catgcgatcc acccgacaac gacaaaggct
5581 atccgggcaa ttgtggttca gcgaccgttg gaataacgtt tctcctctca tacctagtta
5641 taagcttttt gatagttatt aatatgtaca ttgctgtcat tctcgagaac tatagtcagg
5701 ccaccgagga tgtgcaggag ggtctcaccg acgacgatta cgatatgtac tatgagatct
5761 ggcaacagtt cgatccggag ggcacccagt acatacgata cgaccagctg tccgagttcc
5821 tcgacgtgct ggagcccccg ctccagattc acaagcccaa caagtacaaa atcatatcga
5881 tggacatacc catctgtcgc ggtgacctca tgtactgtgt ggacatactg gacgcactga
5941 ccaaagactt tttcgcgcgc aaaggcaatc ccattgagga gacgggcgag attggtgaga
6001 ttgccgccag gccggacacc gagggctacg agcccgtctc ctccaccctc tggcgacagc
6061 gggaggagta ctgtgcccgc ctcattcaac atgcctggcg caagcataaa acgcgcgccg
6121 agggcggtgg tgcaccgtcc gacgcggaag gcgacggccc cgaagatggt gatgcgggtg
6181 gcggtggcgg ggcggcgctg atgctgggtg ttctggatgt tccagatgct gctggcgatg
6241 cagcaaccac tggctcccat gacggggcaa cggcactcga tcccgagacc gatccatcgg
6301 gagtaccggc ggcagcggcg gtggccccac agccagccgg tgacggcggc gagggaccgg
6361 atggaggagc aacagccgat ccgcacgaga gcaatgtaaa tagtccgacg atggacggcg
6421 cgacggcggg cagcccgggc gcagggagcg ctggcagcac tggccgacag acggccgttc
6481 tcgtggagag cgatgggttt gtgaccaaga acgggcacaa ggttgtaata cactcgcgtt
6541 cgccgagcat aacgtcgcgc acggcggatg tctgagccag gcctcgcccc cccctccaag
6601 atgcacgcga gtattaggtg caggtgcaga tgcagtgcag tggtggtgcc acaacaacaa
6661 caacaacaac agcaggtgcc actggtagct gcaattgcaa ctgcaacagc agcaacagga
6721 agaa