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LOCUS XM_022361522 6730 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X38, mRNA. ACCESSION XM_022361522 VERSION XM_022361522.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361522.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6730 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6730 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6581 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X38" /protein_id="XP_022217214.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEH RDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR GEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLC IVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIF DFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNL TFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEW IESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNK IAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCISAEHGDNELEL GHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTAS INSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDI IIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFE TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVY FTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVV NALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNAC ESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYM YLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGS KKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLD YLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSP TLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMS FFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGY PGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYE IWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDIL DALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRK HKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATAL DPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSA GSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1893..2393 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2598..3233 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3309..3998 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4008..4823 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4791..4949 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4836..4847 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4971..5723 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5754..5897 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgta cacgatccgg aatggacgtg 1921 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 1981 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2041 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2101 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2161 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2221 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2281 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2341 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2401 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2461 aggacgatga tgaggatggg ccgacattaa aagacaaggc cctcgaagcg ctaatgaaag 2521 gcatcgaagt gttttgtgtg tgggactgtt gctgggtttg gttgaaattg caggagtgga 2581 tatcgctgat cgtcttcgat ccctttgtcg agctcttcat cacgctgtgc attgtggtca 2641 acacgatgtt catggccatg gaccatcacg acatgaacaa ggagatggaa cgcatcctta 2701 agtgcggaaa ttatttcttc acggcaacat tcgccattga ggcaaccatg aaactgtgcg 2761 ccatgagccc caaatactat ttccaggagg gctggaacat ctttgacttc atcattgtgg 2821 cactctcatt gctggagctg ggcctcgagg gcgttcaggg cctctccgtc ttgcgttcgt 2881 ttcgtttgct gcgtgtattc aaattggcca agtcctggcc aacacttaat ttactcattt 2941 cgattatggg acgcaccatg ggcgctttgg gtaatctgac atttgtactt tgcattatca 3001 tcttcatctt tgcggtgatg ggaatgcaac tgttcggaaa gaattatcat gataacaagg 3061 atcgcttccc ggacggtgac ctgccccgct ggaacttcac cgacttcatg cacagcttca 3121 tgatcgtgtt tcgggtgcta tgcggcgagt ggatcgagtc catgtgggac tgtatgcacg 3181 tgggcgatgt atcgtgcatt ccattcttct tggccaccgt tgtcatcggc aatttagtgg 3241 ttcttaacct tttcttagcc ctgcttttgt caaattttgg ttcatctagc ttatcagcgc 3301 cgacagccga taacgatacc aataaaatag ccgaggcctt caatcgaatt gggcgattta 3361 aaagttgggt taagcgtaat attgctgatt gtttcaagtt aatacgtaac aaattgacaa 3421 atcaaataag tgatcaacca tcaggcaaag gcgtttgtcg ttgtatatct gcagagcacg 3481 gcgacaacga gctggagctg ggccacgacg agatactcgc cgacgggctc atcaagaagg 3541 gcatcaagga ggcgacacag ctggaggtgg ccatcggtga tggcatggag ttcacgatac 3601 acggcgacat gaagaacaac aagccgaaga aatccaaata tctaaataac gcaacggacg 3661 acgacactgc cagcattaac tcatatggta gccataagaa tcgaccattc aaggatgaga 3721 gccacaaggg cagcgccgag acgatggagg gcgaggagaa gcgggacgcc agcaaggagg 3781 atttaggtat cgatgaggag ctcgacgagg agggcgaatt ggaggagggc ccgctcgacg 3841 gcgatatcat catacatgcc aacgatgagg atatactcga tgaatatcca gctgattgct 3901 gccccgattc gtactataag aaatttccga tcttagccgg tgatgatgac tcgccgttct 3961 ggcaaggatg gggcaattta cgactgaaaa cttttcaatt aattgaaaat aaatattttg 4021 aaacagctgt tatcactatg attttaatga gtagcttagc tttggcatta gaagatgtac 4081 atctgccaca aagacccata ctgcaggata ttttatacta tatggacaga atatttacgg 4141 ttatattctt cttggaaatg ttaatcaagt ggctggcgct cggcttcaaa gtgtacttca 4201 cgaacgcgtg gtgctggctc gatttcgtca ttgtcatggt atcgcttatc aacttcgttg 4261 cttcacttgt tggagctggt ggtattcaag ccttcaagac tatgcgaacg ttaagagcac 4321 tgagaccact acgtgccatg tcccgtatgc agggcatgag ggtcgtcgtt aatgcgctgg 4381 tacaagctat accgtccatc ttcaatgtgc tattggtgtg tctaatattt tggctaattt 4441 ttgccataat gggtgtacag ctttttgctg gaaaatattt taagtgcgag gacatgaatg 4501 gcacgaagct cagccacgag atcataccaa atcgcaatgc ctgcgaaagc gagaactaca 4561 cgtgggtgaa ttcagcaatg aatttcgatc atgtaggtaa cgcgtatctg tgccttttcc 4621 aagtggccac cttcaaaggc tggatacaaa tcatgaacga tgctatcgat tcacgagagg 4681 tggacaagca gccaattcgt gaaacgaaca tctacatgta tttatatttc gtattcttca 4741 tcatatttgg atcatttttc acactcaatc tgttcattgg tgttatcatt gataatttta 4801 atgagcaaaa gaaaaaagca ggtggatcat tagaaatgtt catgacagaa gatcagaaaa 4861 agtactataa tgctatgaaa aagatgggct ctaaaaaacc attaaaagcc attccaagac 4921 caaggtggcg tccacaagca atagtctttg aaatagtaac cgataagaaa ttcgatatag 4981 tcataatgtt attcattggt ctgaacatgt tcaccatgac actcgatcgt tacgatgcgt 5041 cggacacgta caacgcggtc cttgactatc tcaatgcgat attcgtagtt attttcagtt 5101 ccgaatgtct attaaaaata ttcgctttac gatatcacta ttttattgag ccatggaatt 5161 tatttgatgt agtagttgtc attttatcca tcttaggtct cgtacttagc gatattatcg 5221 agaaatactt cgtatcgccg acactgctcc gagtggtgcg cgtggccaaa gtgggtcgcg 5281 tactgcgtct ggtgaagggc gccaagggta tacgaacgct gctgttcgcc ctggccatgt 5341 cgctgccggc gctgttcaac atctgcctgc tgctgttcct ggtcatgttc atcttcgcga 5401 tattcggcat gtcgttcttc atgcatgtga aggagaagag cggcatcaac gacgtctaca 5461 acttcaagac gttcggacag agcatgatcc tgctctttca gatgtctacc tcagccggtt 5521 gggatggtgt actcgacgcc attatcaatg aggaagcatg cgatccaccc gacaacgaca 5581 aaggctatcc gggcaattgt ggttcagcga ccgttggaat aacgtttctc ctctcatacc 5641 tagttataag ctttttgata gttattaata tgtacattgc tgtcattctc gagaactata 5701 gtcaggccac cgaggatgtg caggagggtc tcaccgacga cgattacgat atgtactatg 5761 agatctggca acagttcgat ccggagggca cccagtacat acgatacgac cagctgtccg 5821 agttcctcga cgtgctggag cccccgctcc agattcacaa gcccaacaag tacaaaatca 5881 tatcgatgga catacccatc tgtcgcggtg acctcatgta ctgtgtggac atactggacg 5941 cactgaccaa agactttttc gcgcgcaaag gcaatcccat tgaggagacg ggcgagattg 6001 gtgagattgc cgccaggccg gacaccgagg gctacgagcc cgtctcctcc accctctggc 6061 gacagcggga ggagtactgt gcccgcctca ttcaacatgc ctggcgcaag cataaaacgc 6121 gcgccgaggg cggtggtgca ccgtccgacg cggaaggcga cggccccgaa gatggtgatg 6181 cgggtggcgg tggcggggcg gcgctgatgc tgggtgttct ggatgttcca gatgctgctg 6241 gcgatgcagc aaccactggc tcccatgacg gggcaacggc actcgatccc gagaccgatc 6301 catcgggagt accggcggca gcggcggtgg ccccacagcc agccggtgac ggcggcgagg 6361 gaccggatgg aggagcaaca gccgatccgc acgagagcaa tgtaaatagt ccgacgatgg 6421 acggcgcgac ggcgggcagc ccgggcgcag ggagcgctgg cagcactggc cgacagacgg 6481 ccgttctcgt ggagagcgat gggtttgtga ccaagaacgg gcacaaggtt gtaatacact 6541 cgcgttcgcc gagcataacg tcgcgcacgg cggatgtctg agccaggcct cgcccccccc 6601 tccaagatgc acgcgagtat taggtgcagg tgcagatgca gtgcagtggt ggtgccacaa 6661 caacaacaac aacaacagca ggtgccactg gtagctgcaa ttgcaactgc aacagcagca 6721 acaggaagaa