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LOCUS XM_022361520 6730 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X37, mRNA. ACCESSION XM_022361520 VERSION XM_022361520.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361520.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6730 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6730 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6581 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X37" /protein_id="XP_022217212.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLS TYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGD LLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFEIGLECTD EAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED DDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV NTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV LCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES MWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEEHGDNELEL GHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTAS INSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDI IIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFE TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVY FTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVV NALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNAC ESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYM YLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGS KKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLD YLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSP TLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMS FFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGY PGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYE IWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDIL DALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRK HKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATAL DPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSA GSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 657..1511 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1860..2360 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2589..3224 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3300..3998 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4008..4823 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4791..4949 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4836..4847 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4971..5723 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5754..5897 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc 421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct 481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac 541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa 601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc 661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc 721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat 781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg 841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt 901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca 961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg 1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct 1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca 1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag 1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg 1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt 1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc 1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca 1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg 1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag 1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc 1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga 1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg 1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg 1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga 1861 gcacgtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc 1921 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga 1981 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa 2041 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac 2101 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca 2161 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct 2221 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg 2281 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa 2341 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc 2401 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg 2461 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag 2521 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga 2581 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt 2641 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa 2701 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc 2761 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat 2821 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc 2881 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg 2941 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct 3001 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc 3061 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt 3121 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg 3181 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc 3241 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg 3301 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg 3361 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa 3421 gtgatcaacc atcaggtgag aggaccaacc agatcagttg gatttggagc gaagagcacg 3481 gcgacaacga gctggagctg ggccacgacg agatactcgc cgacgggctc atcaagaagg 3541 gcatcaagga ggcgacacag ctggaggtgg ccatcggtga tggcatggag ttcacgatac 3601 acggcgacat gaagaacaac aagccgaaga aatccaaata tctaaataac gcaacggacg 3661 acgacactgc cagcattaac tcatatggta gccataagaa tcgaccattc aaggatgaga 3721 gccacaaggg cagcgccgag acgatggagg gcgaggagaa gcgggacgcc agcaaggagg 3781 atttaggtat cgatgaggag ctcgacgagg agggcgaatt ggaggagggc ccgctcgacg 3841 gcgatatcat catacatgcc aacgatgagg atatactcga tgaatatcca gctgattgct 3901 gccccgattc gtactataag aaatttccga tcttagccgg tgatgatgac tcgccgttct 3961 ggcaaggatg gggcaattta cgactgaaaa cttttcaatt aattgaaaat aaatattttg 4021 aaacagctgt tatcactatg attttaatga gtagcttagc tttggcatta gaagatgtac 4081 atctgccaca aagacccata ctgcaggata ttttatacta tatggacaga atatttacgg 4141 ttatattctt cttggaaatg ttaatcaagt ggctggcgct cggcttcaaa gtgtacttca 4201 cgaacgcgtg gtgctggctc gatttcgtca ttgtcatggt atcgcttatc aacttcgttg 4261 cttcacttgt tggagctggt ggtattcaag ccttcaagac tatgcgaacg ttaagagcac 4321 tgagaccact acgtgccatg tcccgtatgc agggcatgag ggtcgtcgtt aatgcgctgg 4381 tacaagctat accgtccatc ttcaatgtgc tattggtgtg tctaatattt tggctaattt 4441 ttgccataat gggtgtacag ctttttgctg gaaaatattt taagtgcgag gacatgaatg 4501 gcacgaagct cagccacgag atcataccaa atcgcaatgc ctgcgaaagc gagaactaca 4561 cgtgggtgaa ttcagcaatg aatttcgatc atgtaggtaa cgcgtatctg tgccttttcc 4621 aagtggccac cttcaaaggc tggatacaaa tcatgaacga tgctatcgat tcacgagagg 4681 tggacaagca gccaattcgt gaaacgaaca tctacatgta tttatatttc gtattcttca 4741 tcatatttgg atcatttttc acactcaatc tgttcattgg tgttatcatt gataatttta 4801 atgagcaaaa gaaaaaagca ggtggatcat tagaaatgtt catgacagaa gatcagaaaa 4861 agtactataa tgctatgaaa aagatgggct ctaaaaaacc attaaaagcc attccaagac 4921 caaggtggcg tccacaagca atagtctttg aaatagtaac cgataagaaa ttcgatatag 4981 tcataatgtt attcattggt ctgaacatgt tcaccatgac actcgatcgt tacgatgcgt 5041 cggacacgta caacgcggtc cttgactatc tcaatgcgat attcgtagtt attttcagtt 5101 ccgaatgtct attaaaaata ttcgctttac gatatcacta ttttattgag ccatggaatt 5161 tatttgatgt agtagttgtc attttatcca tcttaggtct cgtacttagc gatattatcg 5221 agaaatactt cgtatcgccg acactgctcc gagtggtgcg cgtggccaaa gtgggtcgcg 5281 tactgcgtct ggtgaagggc gccaagggta tacgaacgct gctgttcgcc ctggccatgt 5341 cgctgccggc gctgttcaac atctgcctgc tgctgttcct ggtcatgttc atcttcgcga 5401 tattcggcat gtcgttcttc atgcatgtga aggagaagag cggcatcaac gacgtctaca 5461 acttcaagac gttcggacag agcatgatcc tgctctttca gatgtctacc tcagccggtt 5521 gggatggtgt actcgacgcc attatcaatg aggaagcatg cgatccaccc gacaacgaca 5581 aaggctatcc gggcaattgt ggttcagcga ccgttggaat aacgtttctc ctctcatacc 5641 tagttataag ctttttgata gttattaata tgtacattgc tgtcattctc gagaactata 5701 gtcaggccac cgaggatgtg caggagggtc tcaccgacga cgattacgat atgtactatg 5761 agatctggca acagttcgat ccggagggca cccagtacat acgatacgac cagctgtccg 5821 agttcctcga cgtgctggag cccccgctcc agattcacaa gcccaacaag tacaaaatca 5881 tatcgatgga catacccatc tgtcgcggtg acctcatgta ctgtgtggac atactggacg 5941 cactgaccaa agactttttc gcgcgcaaag gcaatcccat tgaggagacg ggcgagattg 6001 gtgagattgc cgccaggccg gacaccgagg gctacgagcc cgtctcctcc accctctggc 6061 gacagcggga ggagtactgt gcccgcctca ttcaacatgc ctggcgcaag cataaaacgc 6121 gcgccgaggg cggtggtgca ccgtccgacg cggaaggcga cggccccgaa gatggtgatg 6181 cgggtggcgg tggcggggcg gcgctgatgc tgggtgttct ggatgttcca gatgctgctg 6241 gcgatgcagc aaccactggc tcccatgacg gggcaacggc actcgatccc gagaccgatc 6301 catcgggagt accggcggca gcggcggtgg ccccacagcc agccggtgac ggcggcgagg 6361 gaccggatgg aggagcaaca gccgatccgc acgagagcaa tgtaaatagt ccgacgatgg 6421 acggcgcgac ggcgggcagc ccgggcgcag ggagcgctgg cagcactggc cgacagacgg 6481 ccgttctcgt ggagagcgat gggtttgtga ccaagaacgg gcacaaggtt gtaatacact 6541 cgcgttcgcc gagcataacg tcgcgcacgg cggatgtctg agccaggcct cgcccccccc 6601 tccaagatgc acgcgagtat taggtgcagg tgcagatgca gtgcagtggt ggtgccacaa 6661 caacaacaac aacaacagca ggtgccactg gtagctgcaa ttgcaactgc aacagcagca 6721 acaggaagaa