PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361520 6730 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X37, mRNA.
ACCESSION XM_022361520
VERSION XM_022361520.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361520.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6730
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6730
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 43 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6581
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X37"
/protein_id="XP_022217212.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL
TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI
MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM
GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL
MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS
GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP
WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA
AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM
SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLS
TYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGD
LLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFEIGLECTD
EAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED
DDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV
NTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI
IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV
LCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES
MWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE
AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEEHGDNELEL
GHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTAS
INSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDI
IIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFE
TAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVY
FTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVV
NALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNAC
ESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYM
YLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGS
KKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLD
YLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSP
TLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMS
FFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGY
PGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYE
IWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDIL
DALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRK
HKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATAL
DPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSA
GSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 657..1511
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1860..2360
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2589..3224
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3300..3998
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4008..4823
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4791..4949
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4836..4847
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4971..5723
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5754..5897
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc
421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct
481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac
541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa
601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc
661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc
721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat
781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg
841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt
901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca
961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg
1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct
1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca
1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag
1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg
1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt
1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc
1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca
1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg
1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag
1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc
1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga
1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg
1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg
1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga
1861 gcacgtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc
1921 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga
1981 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa
2041 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac
2101 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca
2161 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct
2221 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg
2281 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa
2341 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc
2401 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg
2461 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag
2521 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga
2581 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt
2641 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa
2701 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc
2761 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat
2821 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc
2881 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg
2941 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct
3001 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc
3061 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt
3121 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg
3181 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc
3241 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg
3301 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg
3361 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa
3421 gtgatcaacc atcaggtgag aggaccaacc agatcagttg gatttggagc gaagagcacg
3481 gcgacaacga gctggagctg ggccacgacg agatactcgc cgacgggctc atcaagaagg
3541 gcatcaagga ggcgacacag ctggaggtgg ccatcggtga tggcatggag ttcacgatac
3601 acggcgacat gaagaacaac aagccgaaga aatccaaata tctaaataac gcaacggacg
3661 acgacactgc cagcattaac tcatatggta gccataagaa tcgaccattc aaggatgaga
3721 gccacaaggg cagcgccgag acgatggagg gcgaggagaa gcgggacgcc agcaaggagg
3781 atttaggtat cgatgaggag ctcgacgagg agggcgaatt ggaggagggc ccgctcgacg
3841 gcgatatcat catacatgcc aacgatgagg atatactcga tgaatatcca gctgattgct
3901 gccccgattc gtactataag aaatttccga tcttagccgg tgatgatgac tcgccgttct
3961 ggcaaggatg gggcaattta cgactgaaaa cttttcaatt aattgaaaat aaatattttg
4021 aaacagctgt tatcactatg attttaatga gtagcttagc tttggcatta gaagatgtac
4081 atctgccaca aagacccata ctgcaggata ttttatacta tatggacaga atatttacgg
4141 ttatattctt cttggaaatg ttaatcaagt ggctggcgct cggcttcaaa gtgtacttca
4201 cgaacgcgtg gtgctggctc gatttcgtca ttgtcatggt atcgcttatc aacttcgttg
4261 cttcacttgt tggagctggt ggtattcaag ccttcaagac tatgcgaacg ttaagagcac
4321 tgagaccact acgtgccatg tcccgtatgc agggcatgag ggtcgtcgtt aatgcgctgg
4381 tacaagctat accgtccatc ttcaatgtgc tattggtgtg tctaatattt tggctaattt
4441 ttgccataat gggtgtacag ctttttgctg gaaaatattt taagtgcgag gacatgaatg
4501 gcacgaagct cagccacgag atcataccaa atcgcaatgc ctgcgaaagc gagaactaca
4561 cgtgggtgaa ttcagcaatg aatttcgatc atgtaggtaa cgcgtatctg tgccttttcc
4621 aagtggccac cttcaaaggc tggatacaaa tcatgaacga tgctatcgat tcacgagagg
4681 tggacaagca gccaattcgt gaaacgaaca tctacatgta tttatatttc gtattcttca
4741 tcatatttgg atcatttttc acactcaatc tgttcattgg tgttatcatt gataatttta
4801 atgagcaaaa gaaaaaagca ggtggatcat tagaaatgtt catgacagaa gatcagaaaa
4861 agtactataa tgctatgaaa aagatgggct ctaaaaaacc attaaaagcc attccaagac
4921 caaggtggcg tccacaagca atagtctttg aaatagtaac cgataagaaa ttcgatatag
4981 tcataatgtt attcattggt ctgaacatgt tcaccatgac actcgatcgt tacgatgcgt
5041 cggacacgta caacgcggtc cttgactatc tcaatgcgat attcgtagtt attttcagtt
5101 ccgaatgtct attaaaaata ttcgctttac gatatcacta ttttattgag ccatggaatt
5161 tatttgatgt agtagttgtc attttatcca tcttaggtct cgtacttagc gatattatcg
5221 agaaatactt cgtatcgccg acactgctcc gagtggtgcg cgtggccaaa gtgggtcgcg
5281 tactgcgtct ggtgaagggc gccaagggta tacgaacgct gctgttcgcc ctggccatgt
5341 cgctgccggc gctgttcaac atctgcctgc tgctgttcct ggtcatgttc atcttcgcga
5401 tattcggcat gtcgttcttc atgcatgtga aggagaagag cggcatcaac gacgtctaca
5461 acttcaagac gttcggacag agcatgatcc tgctctttca gatgtctacc tcagccggtt
5521 gggatggtgt actcgacgcc attatcaatg aggaagcatg cgatccaccc gacaacgaca
5581 aaggctatcc gggcaattgt ggttcagcga ccgttggaat aacgtttctc ctctcatacc
5641 tagttataag ctttttgata gttattaata tgtacattgc tgtcattctc gagaactata
5701 gtcaggccac cgaggatgtg caggagggtc tcaccgacga cgattacgat atgtactatg
5761 agatctggca acagttcgat ccggagggca cccagtacat acgatacgac cagctgtccg
5821 agttcctcga cgtgctggag cccccgctcc agattcacaa gcccaacaag tacaaaatca
5881 tatcgatgga catacccatc tgtcgcggtg acctcatgta ctgtgtggac atactggacg
5941 cactgaccaa agactttttc gcgcgcaaag gcaatcccat tgaggagacg ggcgagattg
6001 gtgagattgc cgccaggccg gacaccgagg gctacgagcc cgtctcctcc accctctggc
6061 gacagcggga ggagtactgt gcccgcctca ttcaacatgc ctggcgcaag cataaaacgc
6121 gcgccgaggg cggtggtgca ccgtccgacg cggaaggcga cggccccgaa gatggtgatg
6181 cgggtggcgg tggcggggcg gcgctgatgc tgggtgttct ggatgttcca gatgctgctg
6241 gcgatgcagc aaccactggc tcccatgacg gggcaacggc actcgatccc gagaccgatc
6301 catcgggagt accggcggca gcggcggtgg ccccacagcc agccggtgac ggcggcgagg
6361 gaccggatgg aggagcaaca gccgatccgc acgagagcaa tgtaaatagt ccgacgatgg
6421 acggcgcgac ggcgggcagc ccgggcgcag ggagcgctgg cagcactggc cgacagacgg
6481 ccgttctcgt ggagagcgat gggtttgtga ccaagaacgg gcacaaggtt gtaatacact
6541 cgcgttcgcc gagcataacg tcgcgcacgg cggatgtctg agccaggcct cgcccccccc
6601 tccaagatgc acgcgagtat taggtgcagg tgcagatgca gtgcagtggt ggtgccacaa
6661 caacaacaac aacaacagca ggtgccactg gtagctgcaa ttgcaactgc aacagcagca
6721 acaggaagaa