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LOCUS XM_022361519 6739 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X36, mRNA. ACCESSION XM_022361519 VERSION XM_022361519.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361519.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6739 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6739 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6590 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X36" /protein_id="XP_022217211.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEH RDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR GEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLC IVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIF DFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNL TFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEW IESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNK IAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEEHGDNE LELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDD TASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLD GDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENK YFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGF KVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMR VVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNR NACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETN IYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKK MGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNA VLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYF VSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIF GMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDND KGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDM YYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCV DILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHA WRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGA TALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGA GSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1893..2393 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2598..3233 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3309..4007 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4017..4832 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4800..4958 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4845..4856 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4980..5732 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5763..5906 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgta cacgatccgg aatggacgtg 1921 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 1981 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2041 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2101 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2161 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2221 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2281 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2341 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2401 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2461 aggacgatga tgaggatggg ccgacattaa aagacaaggc cctcgaagcg ctaatgaaag 2521 gcatcgaagt gttttgtgtg tgggactgtt gctgggtttg gttgaaattg caggagtgga 2581 tatcgctgat cgtcttcgat ccctttgtcg agctcttcat cacgctgtgc attgtggtca 2641 acacgatgtt catggccatg gaccatcacg acatgaacaa ggagatggaa cgcatcctta 2701 agtgcggaaa ttatttcttc acggcaacat tcgccattga ggcaaccatg aaactgtgcg 2761 ccatgagccc caaatactat ttccaggagg gctggaacat ctttgacttc atcattgtgg 2821 cactctcatt gctggagctg ggcctcgagg gcgttcaggg cctctccgtc ttgcgttcgt 2881 ttcgtttgct gcgtgtattc aaattggcca agtcctggcc aacacttaat ttactcattt 2941 cgattatggg acgcaccatg ggcgctttgg gtaatctgac atttgtactt tgcattatca 3001 tcttcatctt tgcggtgatg ggaatgcaac tgttcggaaa gaattatcat gataacaagg 3061 atcgcttccc ggacggtgac ctgccccgct ggaacttcac cgacttcatg cacagcttca 3121 tgatcgtgtt tcgggtgcta tgcggcgagt ggatcgagtc catgtgggac tgtatgcacg 3181 tgggcgatgt atcgtgcatt ccattcttct tggccaccgt tgtcatcggc aatttagtgg 3241 ttcttaacct tttcttagcc ctgcttttgt caaattttgg ttcatctagc ttatcagcgc 3301 cgacagccga taacgatacc aataaaatag ccgaggcctt caatcgaatt gggcgattta 3361 aaagttgggt taagcgtaat attgctgatt gtttcaagtt aatacgtaac aaattgacaa 3421 atcaaataag tgatcaacca tcaggtgaga ggaccaacca gatcagttgg atttggagcg 3481 aagagcacgg cgacaacgag ctggagctgg gccacgacga gatactcgcc gacgggctca 3541 tcaagaaggg catcaaggag gcgacacagc tggaggtggc catcggtgat ggcatggagt 3601 tcacgataca cggcgacatg aagaacaaca agccgaagaa atccaaatat ctaaataacg 3661 caacggacga cgacactgcc agcattaact catatggtag ccataagaat cgaccattca 3721 aggatgagag ccacaagggc agcgccgaga cgatggaggg cgaggagaag cgggacgcca 3781 gcaaggagga tttaggtatc gatgaggagc tcgacgagga gggcgaattg gaggagggcc 3841 cgctcgacgg cgatatcatc atacatgcca acgatgagga tatactcgat gaatatccag 3901 ctgattgctg ccccgattcg tactataaga aatttccgat cttagccggt gatgatgact 3961 cgccgttctg gcaaggatgg ggcaatttac gactgaaaac ttttcaatta attgaaaata 4021 aatattttga aacagctgtt atcactatga ttttaatgag tagcttagct ttggcattag 4081 aagatgtaca tctgccacaa agacccatac tgcaggatat tttatactat atggacagaa 4141 tatttacggt tatattcttc ttggaaatgt taatcaagtg gctggcgctc ggcttcaaag 4201 tgtacttcac gaacgcgtgg tgctggctcg atttcgtcat tgtcatggta tcgcttatca 4261 acttcgttgc ttcacttgtt ggagctggtg gtattcaagc cttcaagact atgcgaacgt 4321 taagagcact gagaccacta cgtgccatgt cccgtatgca gggcatgagg gtcgtcgtta 4381 atgcgctggt acaagctata ccgtccatct tcaatgtgct attggtgtgt ctaatatttt 4441 ggctaatttt tgccataatg ggtgtacagc tttttgctgg aaaatatttt aagtgcgagg 4501 acatgaatgg cacgaagctc agccacgaga tcataccaaa tcgcaatgcc tgcgaaagcg 4561 agaactacac gtgggtgaat tcagcaatga atttcgatca tgtaggtaac gcgtatctgt 4621 gccttttcca agtggccacc ttcaaaggct ggatacaaat catgaacgat gctatcgatt 4681 cacgagaggt ggacaagcag ccaattcgtg aaacgaacat ctacatgtat ttatatttcg 4741 tattcttcat catatttgga tcatttttca cactcaatct gttcattggt gttatcattg 4801 ataattttaa tgagcaaaag aaaaaagcag gtggatcatt agaaatgttc atgacagaag 4861 atcagaaaaa gtactataat gctatgaaaa agatgggctc taaaaaacca ttaaaagcca 4921 ttccaagacc aaggtggcgt ccacaagcaa tagtctttga aatagtaacc gataagaaat 4981 tcgatatagt cataatgtta ttcattggtc tgaacatgtt caccatgaca ctcgatcgtt 5041 acgatgcgtc ggacacgtac aacgcggtcc ttgactatct caatgcgata ttcgtagtta 5101 ttttcagttc cgaatgtcta ttaaaaatat tcgctttacg atatcactat tttattgagc 5161 catggaattt atttgatgta gtagttgtca ttttatccat cttaggtctc gtacttagcg 5221 atattatcga gaaatacttc gtatcgccga cactgctccg agtggtgcgc gtggccaaag 5281 tgggtcgcgt actgcgtctg gtgaagggcg ccaagggtat acgaacgctg ctgttcgccc 5341 tggccatgtc gctgccggcg ctgttcaaca tctgcctgct gctgttcctg gtcatgttca 5401 tcttcgcgat attcggcatg tcgttcttca tgcatgtgaa ggagaagagc ggcatcaacg 5461 acgtctacaa cttcaagacg ttcggacaga gcatgatcct gctctttcag atgtctacct 5521 cagccggttg ggatggtgta ctcgacgcca ttatcaatga ggaagcatgc gatccacccg 5581 acaacgacaa aggctatccg ggcaattgtg gttcagcgac cgttggaata acgtttctcc 5641 tctcatacct agttataagc tttttgatag ttattaatat gtacattgct gtcattctcg 5701 agaactatag tcaggccacc gaggatgtgc aggagggtct caccgacgac gattacgata 5761 tgtactatga gatctggcaa cagttcgatc cggagggcac ccagtacata cgatacgacc 5821 agctgtccga gttcctcgac gtgctggagc ccccgctcca gattcacaag cccaacaagt 5881 acaaaatcat atcgatggac atacccatct gtcgcggtga cctcatgtac tgtgtggaca 5941 tactggacgc actgaccaaa gactttttcg cgcgcaaagg caatcccatt gaggagacgg 6001 gcgagattgg tgagattgcc gccaggccgg acaccgaggg ctacgagccc gtctcctcca 6061 ccctctggcg acagcgggag gagtactgtg cccgcctcat tcaacatgcc tggcgcaagc 6121 ataaaacgcg cgccgagggc ggtggtgcac cgtccgacgc ggaaggcgac ggccccgaag 6181 atggtgatgc gggtggcggt ggcggggcgg cgctgatgct gggtgttctg gatgttccag 6241 atgctgctgg cgatgcagca accactggct cccatgacgg ggcaacggca ctcgatcccg 6301 agaccgatcc atcgggagta ccggcggcag cggcggtggc cccacagcca gccggtgacg 6361 gcggcgaggg accggatgga ggagcaacag ccgatccgca cgagagcaat gtaaatagtc 6421 cgacgatgga cggcgcgacg gcgggcagcc cgggcgcagg gagcgctggc agcactggcc 6481 gacagacggc cgttctcgtg gagagcgatg ggtttgtgac caagaacggg cacaaggttg 6541 taatacactc gcgttcgccg agcataacgt cgcgcacggc ggatgtctga gccaggcctc 6601 gcccccccct ccaagatgca cgcgagtatt aggtgcaggt gcagatgcag tgcagtggtg 6661 gtgccacaac aacaacaaca acaacagcag gtgccactgg tagctgcaat tgcaactgca 6721 acagcagcaa caggaagaa