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LOCUS XM_022361518 6751 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X35, mRNA. ACCESSION XM_022361518 VERSION XM_022361518.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361518.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6751 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6751 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6602 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X35" /protein_id="XP_022217210.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNILT FVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNISG AGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTI RNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLG SRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTC LDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAA GRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEW ISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMK LCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTL NLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFT DFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSN FGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEH GDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNA TDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEE GPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQL IENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRM QGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEI IPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPI RETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYN AMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASD TYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDII EKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFI FAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDP PDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDD DYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDL MYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARL IQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGS HDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAG SPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 654..1508 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1863..2420 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2649..3284 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3360..4019 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4029..4844 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4812..4970 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4857..4868 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4992..5744 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5775..5918 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagatccgat atgatgacga ggacgaggat gaaggtccac 421 aaccggatcc tacacttgaa cagggtgtgc caatacctgt tcgactgcag ggcagcttcc 481 ctccggaatt ggcctccact cccctcgagg atatcgatcc cttctacagc aatatactga 541 cattcgtagt tgtaagcaaa ggaaaagata tttttcgctt ttctgcatca aaagcaatgt 601 ggctgctcga tccattcaat ccgatacgtc gtgtggccat ttacatttta gtgcatccac 661 tattttcgtt attcatcatt accacaattc tcgtcaactg catcctgatg ataatgccga 721 caacgcccac agttgagtcc actgaggtga tattcaccgg aatctacaca tttgaatcag 781 ctgttaaagt gatggcacga ggtttcattt tatgcccgtt tacgtatctt agagatgcat 841 ggaattggct ggacttcgta gtaatagctt tagcttatgt gaccatgggt atagatttag 901 gtaatcttgc agccttgcga acgtttaggg tgctgcgagc gcttaaaacc gtagccattg 961 tgccaggctt gaagaccatt gtcggtgcgg tcatcgaatc tgtaaagaat ctgcgcgatg 1021 tgataatttt gacaatgttc tccctgtcgg tgttcgcgct gatggggctg caaatctaca 1081 tgggcgtgct aacgcagaag tgcatcaaga agttcccgct ggacggctcc tggggcaacc 1141 tgaccgacga gaactgggcc tatcacaata gcaacaactc taattggtat tcggaagacg 1201 acggtatatc ctttccgttg tgcggtaata tctctggagc ggggcaatgt gaagacgatt 1261 acgtgtgtct gcaggggttc gggccgaacc cgaactatgg ctacaccagt ttcgattcgt 1321 tcggttgggc gtttctgtcc gccttccggc tgatgacgca ggacttctgg gaggatctgt 1381 atcagctggt gttgcgtgcc gcaggaccct ggcacatgct gttctttata gtcatcatct 1441 tcctaggttc attctatctt gtgaatttga ttttggccat tgttgccatg tcgtatgacg 1501 aattgcaaaa gaaggccgaa gaagaagagg ctgccgaaga ggaggcgata cgtgaagccg 1561 aggaagctgc cgccgccaaa gcagccaagc tggaggagcg cgccaatgcg caggcccagg 1621 ccgccgccga tgcagctgcc gccgaagagg cggctcttca tccggagatg gccaagagtc 1681 cgacgtattc gtgcatcagc tatgagctat ttgtgggcgg cgagaaaggc aacgatgaca 1741 acaacaagga gaagatgtcc atacgcagcg ttgaggtgga gtcggagtcg gtgagcgtta 1801 tacaaagaca accagcacct accacagcac accaagctac caaagttcgt aaagtgagca 1861 cgacatcctt atccttacct ggttcaccgt ttaacatacg caggggatca cgtagttctc 1921 acaagtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc 1981 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga 2041 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa 2101 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac 2161 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca 2221 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct 2281 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg 2341 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa 2401 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc 2461 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg 2521 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag 2581 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga 2641 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt 2701 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa 2761 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc 2821 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat 2881 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc 2941 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg 3001 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct 3061 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc 3121 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt 3181 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg 3241 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc 3301 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg 3361 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg 3421 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa 3481 gtgatcaacc atcagagcac ggcgacaacg agctggagct gggccacgac gagatactcg 3541 ccgacgggct catcaagaag ggcatcaagg aggcgacaca gctggaggtg gccatcggtg 3601 atggcatgga gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat 3661 atctaaataa cgcaacggac gacgacactg ccagcattaa ctcatatggt agccataaga 3721 atcgaccatt caaggatgag agccacaagg gcagcgccga gacgatggag ggcgaggaga 3781 agcgggacgc cagcaaggag gatttaggta tcgatgagga gctcgacgag gagggcgaat 3841 tggaggaggg cccgctcgac ggcgatatca tcatacatgc caacgatgag gatatactcg 3901 atgaatatcc agctgattgc tgccccgatt cgtactataa gaaatttccg atcttagccg 3961 gtgatgatga ctcgccgttc tggcaaggat ggggcaattt acgactgaaa acttttcaat 4021 taattgaaaa taaatatttt gaaacagctg ttatcactat gattttaatg agtagcttag 4081 ctttggcatt agaagatgta catctgccac aaagacccat actgcaggat attttatact 4141 atatggacag aatatttacg gttatattct tcttggaaat gttaatcaag tggctggcgc 4201 tcggcttcaa agtgtacttc acgaacgcgt ggtgctggct cgatttcgtc attgtcatgg 4261 tatcgcttat caacttcgtt gcttcacttg ttggagctgg tggtattcaa gccttcaaga 4321 ctatgcgaac gttaagagca ctgagaccac tacgtgccat gtcccgtatg cagggcatga 4381 gggtcgtcgt taatgcgctg gtacaagcta taccgtccat cttcaatgtg ctattggtgt 4441 gtctaatatt ttggctaatt tttgccataa tgggtgtaca gctttttgct ggaaaatatt 4501 ttaagtgcga ggacatgaat ggcacgaagc tcagccacga gatcatacca aatcgcaatg 4561 cctgcgaaag cgagaactac acgtgggtga attcagcaat gaatttcgat catgtaggta 4621 acgcgtatct gtgccttttc caagtggcca ccttcaaagg ctggatacaa atcatgaacg 4681 atgctatcga ttcacgagag gtggacaagc agccaattcg tgaaacgaac atctacatgt 4741 atttatattt cgtattcttc atcatatttg gatcattttt cacactcaat ctgttcattg 4801 gtgttatcat tgataatttt aatgagcaaa agaaaaaagc aggtggatca ttagaaatgt 4861 tcatgacaga agatcagaaa aagtactata atgctatgaa aaagatgggc tctaaaaaac 4921 cattaaaagc cattccaaga ccaaggtggc gtccacaagc aatagtcttt gaaatagtaa 4981 ccgataagaa attcgatata gtcataatgt tattcattgg tctgaacatg ttcaccatga 5041 cactcgatcg ttacgatgcg tcggacacgt acaacgcggt ccttgactat ctcaatgcga 5101 tattcgtagt tattttcagt tccgaatgtc tattaaaaat attcgcttta cgatatcact 5161 attttattga gccatggaat ttatttgatg tagtagttgt cattttatcc atcttaggtc 5221 tcgtacttag cgatattatc gagaaatact tcgtatcgcc gacactgctc cgagtggtgc 5281 gcgtggccaa agtgggtcgc gtactgcgtc tggtgaaggg cgccaagggt atacgaacgc 5341 tgctgttcgc cctggccatg tcgctgccgg cgctgttcaa catctgcctg ctgctgttcc 5401 tggtcatgtt catcttcgcg atattcggca tgtcgttctt catgcatgtg aaggagaaga 5461 gcggcatcaa cgacgtctac aacttcaaga cgttcggaca gagcatgatc ctgctctttc 5521 agatgtctac ctcagccggt tgggatggtg tactcgacgc cattatcaat gaggaagcat 5581 gcgatccacc cgacaacgac aaaggctatc cgggcaattg tggttcagcg accgttggaa 5641 taacgtttct cctctcatac ctagttataa gctttttgat agttattaat atgtacattg 5701 ctgtcattct cgagaactat agtcaggcca ccgaggatgt gcaggagggt ctcaccgacg 5761 acgattacga tatgtactat gagatctggc aacagttcga tccggagggc acccagtaca 5821 tacgatacga ccagctgtcc gagttcctcg acgtgctgga gcccccgctc cagattcaca 5881 agcccaacaa gtacaaaatc atatcgatgg acatacccat ctgtcgcggt gacctcatgt 5941 actgtgtgga catactggac gcactgacca aagacttttt cgcgcgcaaa ggcaatccca 6001 ttgaggagac gggcgagatt ggtgagattg ccgccaggcc ggacaccgag ggctacgagc 6061 ccgtctcctc caccctctgg cgacagcggg aggagtactg tgcccgcctc attcaacatg 6121 cctggcgcaa gcataaaacg cgcgccgagg gcggtggtgc accgtccgac gcggaaggcg 6181 acggccccga agatggtgat gcgggtggcg gtggcggggc ggcgctgatg ctgggtgttc 6241 tggatgttcc agatgctgct ggcgatgcag caaccactgg ctcccatgac ggggcaacgg 6301 cactcgatcc cgagaccgat ccatcgggag taccggcggc agcggcggtg gccccacagc 6361 cagccggtga cggcggcgag ggaccggatg gaggagcaac agccgatccg cacgagagca 6421 atgtaaatag tccgacgatg gacggcgcga cggcgggcag cccgggcgca gggagcgctg 6481 gcagcactgg ccgacagacg gccgttctcg tggagagcga tgggtttgtg accaagaacg 6541 ggcacaaggt tgtaatacac tcgcgttcgc cgagcataac gtcgcgcacg gcggatgtct 6601 gagccaggcc tcgccccccc ctccaagatg cacgcgagta ttaggtgcag gtgcagatgc 6661 agtgcagtgg tggtgccaca acaacaacaa caacaacagc aggtgccact ggtagctgca 6721 attgcaactg caacagcagc aacaggaaga a