PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361518 6751 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X35, mRNA.
ACCESSION XM_022361518
VERSION XM_022361518.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361518.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6751
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6751
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 53 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6602
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X35"
/protein_id="XP_022217210.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNILT
FVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM
PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG
IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM
GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNISG
AGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW
HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA
KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS
IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTI
RNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLG
SRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTC
LDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAA
GRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEW
ISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMK
LCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTL
NLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFT
DFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSN
FGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEH
GDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNA
TDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEE
GPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQL
IENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRM
QGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEI
IPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPI
RETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYN
AMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASD
TYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDII
EKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFI
FAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDP
PDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDD
DYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDL
MYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARL
IQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGS
HDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAG
SPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 654..1508
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1863..2420
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2649..3284
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3360..4019
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4029..4844
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4812..4970
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4857..4868
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4992..5744
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5775..5918
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagatccgat atgatgacga ggacgaggat gaaggtccac
421 aaccggatcc tacacttgaa cagggtgtgc caatacctgt tcgactgcag ggcagcttcc
481 ctccggaatt ggcctccact cccctcgagg atatcgatcc cttctacagc aatatactga
541 cattcgtagt tgtaagcaaa ggaaaagata tttttcgctt ttctgcatca aaagcaatgt
601 ggctgctcga tccattcaat ccgatacgtc gtgtggccat ttacatttta gtgcatccac
661 tattttcgtt attcatcatt accacaattc tcgtcaactg catcctgatg ataatgccga
721 caacgcccac agttgagtcc actgaggtga tattcaccgg aatctacaca tttgaatcag
781 ctgttaaagt gatggcacga ggtttcattt tatgcccgtt tacgtatctt agagatgcat
841 ggaattggct ggacttcgta gtaatagctt tagcttatgt gaccatgggt atagatttag
901 gtaatcttgc agccttgcga acgtttaggg tgctgcgagc gcttaaaacc gtagccattg
961 tgccaggctt gaagaccatt gtcggtgcgg tcatcgaatc tgtaaagaat ctgcgcgatg
1021 tgataatttt gacaatgttc tccctgtcgg tgttcgcgct gatggggctg caaatctaca
1081 tgggcgtgct aacgcagaag tgcatcaaga agttcccgct ggacggctcc tggggcaacc
1141 tgaccgacga gaactgggcc tatcacaata gcaacaactc taattggtat tcggaagacg
1201 acggtatatc ctttccgttg tgcggtaata tctctggagc ggggcaatgt gaagacgatt
1261 acgtgtgtct gcaggggttc gggccgaacc cgaactatgg ctacaccagt ttcgattcgt
1321 tcggttgggc gtttctgtcc gccttccggc tgatgacgca ggacttctgg gaggatctgt
1381 atcagctggt gttgcgtgcc gcaggaccct ggcacatgct gttctttata gtcatcatct
1441 tcctaggttc attctatctt gtgaatttga ttttggccat tgttgccatg tcgtatgacg
1501 aattgcaaaa gaaggccgaa gaagaagagg ctgccgaaga ggaggcgata cgtgaagccg
1561 aggaagctgc cgccgccaaa gcagccaagc tggaggagcg cgccaatgcg caggcccagg
1621 ccgccgccga tgcagctgcc gccgaagagg cggctcttca tccggagatg gccaagagtc
1681 cgacgtattc gtgcatcagc tatgagctat ttgtgggcgg cgagaaaggc aacgatgaca
1741 acaacaagga gaagatgtcc atacgcagcg ttgaggtgga gtcggagtcg gtgagcgtta
1801 tacaaagaca accagcacct accacagcac accaagctac caaagttcgt aaagtgagca
1861 cgacatcctt atccttacct ggttcaccgt ttaacatacg caggggatca cgtagttctc
1921 acaagtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc
1981 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga
2041 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa
2101 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac
2161 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca
2221 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct
2281 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg
2341 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa
2401 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc
2461 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg
2521 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag
2581 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga
2641 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt
2701 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa
2761 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc
2821 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat
2881 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc
2941 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg
3001 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct
3061 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc
3121 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt
3181 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg
3241 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc
3301 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg
3361 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg
3421 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa
3481 gtgatcaacc atcagagcac ggcgacaacg agctggagct gggccacgac gagatactcg
3541 ccgacgggct catcaagaag ggcatcaagg aggcgacaca gctggaggtg gccatcggtg
3601 atggcatgga gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat
3661 atctaaataa cgcaacggac gacgacactg ccagcattaa ctcatatggt agccataaga
3721 atcgaccatt caaggatgag agccacaagg gcagcgccga gacgatggag ggcgaggaga
3781 agcgggacgc cagcaaggag gatttaggta tcgatgagga gctcgacgag gagggcgaat
3841 tggaggaggg cccgctcgac ggcgatatca tcatacatgc caacgatgag gatatactcg
3901 atgaatatcc agctgattgc tgccccgatt cgtactataa gaaatttccg atcttagccg
3961 gtgatgatga ctcgccgttc tggcaaggat ggggcaattt acgactgaaa acttttcaat
4021 taattgaaaa taaatatttt gaaacagctg ttatcactat gattttaatg agtagcttag
4081 ctttggcatt agaagatgta catctgccac aaagacccat actgcaggat attttatact
4141 atatggacag aatatttacg gttatattct tcttggaaat gttaatcaag tggctggcgc
4201 tcggcttcaa agtgtacttc acgaacgcgt ggtgctggct cgatttcgtc attgtcatgg
4261 tatcgcttat caacttcgtt gcttcacttg ttggagctgg tggtattcaa gccttcaaga
4321 ctatgcgaac gttaagagca ctgagaccac tacgtgccat gtcccgtatg cagggcatga
4381 gggtcgtcgt taatgcgctg gtacaagcta taccgtccat cttcaatgtg ctattggtgt
4441 gtctaatatt ttggctaatt tttgccataa tgggtgtaca gctttttgct ggaaaatatt
4501 ttaagtgcga ggacatgaat ggcacgaagc tcagccacga gatcatacca aatcgcaatg
4561 cctgcgaaag cgagaactac acgtgggtga attcagcaat gaatttcgat catgtaggta
4621 acgcgtatct gtgccttttc caagtggcca ccttcaaagg ctggatacaa atcatgaacg
4681 atgctatcga ttcacgagag gtggacaagc agccaattcg tgaaacgaac atctacatgt
4741 atttatattt cgtattcttc atcatatttg gatcattttt cacactcaat ctgttcattg
4801 gtgttatcat tgataatttt aatgagcaaa agaaaaaagc aggtggatca ttagaaatgt
4861 tcatgacaga agatcagaaa aagtactata atgctatgaa aaagatgggc tctaaaaaac
4921 cattaaaagc cattccaaga ccaaggtggc gtccacaagc aatagtcttt gaaatagtaa
4981 ccgataagaa attcgatata gtcataatgt tattcattgg tctgaacatg ttcaccatga
5041 cactcgatcg ttacgatgcg tcggacacgt acaacgcggt ccttgactat ctcaatgcga
5101 tattcgtagt tattttcagt tccgaatgtc tattaaaaat attcgcttta cgatatcact
5161 attttattga gccatggaat ttatttgatg tagtagttgt cattttatcc atcttaggtc
5221 tcgtacttag cgatattatc gagaaatact tcgtatcgcc gacactgctc cgagtggtgc
5281 gcgtggccaa agtgggtcgc gtactgcgtc tggtgaaggg cgccaagggt atacgaacgc
5341 tgctgttcgc cctggccatg tcgctgccgg cgctgttcaa catctgcctg ctgctgttcc
5401 tggtcatgtt catcttcgcg atattcggca tgtcgttctt catgcatgtg aaggagaaga
5461 gcggcatcaa cgacgtctac aacttcaaga cgttcggaca gagcatgatc ctgctctttc
5521 agatgtctac ctcagccggt tgggatggtg tactcgacgc cattatcaat gaggaagcat
5581 gcgatccacc cgacaacgac aaaggctatc cgggcaattg tggttcagcg accgttggaa
5641 taacgtttct cctctcatac ctagttataa gctttttgat agttattaat atgtacattg
5701 ctgtcattct cgagaactat agtcaggcca ccgaggatgt gcaggagggt ctcaccgacg
5761 acgattacga tatgtactat gagatctggc aacagttcga tccggagggc acccagtaca
5821 tacgatacga ccagctgtcc gagttcctcg acgtgctgga gcccccgctc cagattcaca
5881 agcccaacaa gtacaaaatc atatcgatgg acatacccat ctgtcgcggt gacctcatgt
5941 actgtgtgga catactggac gcactgacca aagacttttt cgcgcgcaaa ggcaatccca
6001 ttgaggagac gggcgagatt ggtgagattg ccgccaggcc ggacaccgag ggctacgagc
6061 ccgtctcctc caccctctgg cgacagcggg aggagtactg tgcccgcctc attcaacatg
6121 cctggcgcaa gcataaaacg cgcgccgagg gcggtggtgc accgtccgac gcggaaggcg
6181 acggccccga agatggtgat gcgggtggcg gtggcggggc ggcgctgatg ctgggtgttc
6241 tggatgttcc agatgctgct ggcgatgcag caaccactgg ctcccatgac ggggcaacgg
6301 cactcgatcc cgagaccgat ccatcgggag taccggcggc agcggcggtg gccccacagc
6361 cagccggtga cggcggcgag ggaccggatg gaggagcaac agccgatccg cacgagagca
6421 atgtaaatag tccgacgatg gacggcgcga cggcgggcag cccgggcgca gggagcgctg
6481 gcagcactgg ccgacagacg gccgttctcg tggagagcga tgggtttgtg accaagaacg
6541 ggcacaaggt tgtaatacac tcgcgttcgc cgagcataac gtcgcgcacg gcggatgtct
6601 gagccaggcc tcgccccccc ctccaagatg cacgcgagta ttaggtgcag gtgcagatgc
6661 agtgcagtgg tggtgccaca acaacaacaa caacaacagc aggtgccact ggtagctgca
6721 attgcaactg caacagcagc aacaggaaga a