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LOCUS XM_022361517 6754 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X34, mRNA. ACCESSION XM_022361517 VERSION XM_022361517.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361517.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6754 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6754 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6605 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X34" /protein_id="XP_022217209.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYT IRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNL GSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTT CLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQA AGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQE WISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATM KLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPT LNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNF TDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLS NFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSE HGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNN ATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELE EGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQ LIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKW LALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSR MQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHE IIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQP IRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYY NAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDAS DTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDI IEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMF IFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACD PPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTD DDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGD LMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCAR LIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTG SHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATA GSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 657..1511 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1866..2423 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2652..3287 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3363..4022 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4032..4847 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4815..4973 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4860..4871 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4995..5747 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5778..5921 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc 421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct 481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac 541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa 601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc 661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc 721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat 781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg 841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt 901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca 961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg 1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct 1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca 1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag 1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg 1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt 1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc 1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca 1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg 1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag 1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc 1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga 1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg 1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg 1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga 1861 gcacgacatc cttatcctta cctggttcac cgtttaacat acgcagggga tcacgtagtt 1921 ctcacaagta cacgatccgg aatggacgtg gacgctttgg tatacccggc agcgatcgca 1981 agccgttggt attgtcaaca tatcaggatg ctcagcagca cttgccctat gccgatgatt 2041 cgaacgctgt tacgcccatg tccgaggaga acggtgccat tatagtgccc gtttattatg 2101 gaaatctagg ctccaggcat tcatcgtata cttcgcatca gtccagaata tcgtatacct 2161 cacatggcga tctattgggc ggcatggccg tcatgggcgt cagcacaatg accaaggaga 2221 gcaaattgcg aaatcgcaac tcacgcaatc aatcagtggg cgccaccaat ggcggcacca 2281 cctgcctgga ccccaatcac aaggtcgagc atcgcgactt cgaaatcggt ctggagtgca 2341 cggacgaagc tggcaagatt aaacatcatg acaatccttt tatcgagccc gtccagacac 2401 aaacggtagt cgacatgaaa gatgtgatgg tactgaatga cattatcgaa caggccgctg 2461 gtcggcacag tcgggctagt gatcgcggtg tctccgttta ctatttccca acagaggacg 2521 atgatgagga tgggccgaca ttaaaagaca aggccctcga agcgctaatg aaaggcatcg 2581 aagtgttttg tgtgtgggac tgttgctggg tttggttgaa attgcaggag tggatatcgc 2641 tgatcgtctt cgatcccttt gtcgagctct tcatcacgct gtgcattgtg gtcaacacga 2701 tgttcatggc catggaccat cacgacatga acaaggagat ggaacgcatc cttaagtgcg 2761 gaaattattt cttcacggca acattcgcca ttgaggcaac catgaaactg tgcgccatga 2821 gccccaaata ctatttccag gagggctgga acatctttga cttcatcatt gtggcactct 2881 cattgctgga gctgggcctc gagggcgttc agggcctctc cgtcttgcgt tcgtttcgtt 2941 tgctgcgtgt attcaaattg gccaagtcct ggccaacact taatttactc atttcgatta 3001 tgggacgcac catgggcgct ttgggtaatc tgacatttgt actttgcatt atcatcttca 3061 tctttgcggt gatgggaatg caactgttcg gaaagaatta tcatgataac aaggatcgct 3121 tcccggacgg tgacctgccc cgctggaact tcaccgactt catgcacagc ttcatgatcg 3181 tgtttcgggt gctatgcggc gagtggatcg agtccatgtg ggactgtatg cacgtgggcg 3241 atgtatcgtg cattccattc ttcttggcca ccgttgtcat cggcaattta gtggttctta 3301 accttttctt agccctgctt ttgtcaaatt ttggttcatc tagcttatca gcgccgacag 3361 ccgataacga taccaataaa atagccgagg ccttcaatcg aattgggcga tttaaaagtt 3421 gggttaagcg taatattgct gattgtttca agttaatacg taacaaattg acaaatcaaa 3481 taagtgatca accatcagag cacggcgaca acgagctgga gctgggccac gacgagatac 3541 tcgccgacgg gctcatcaag aagggcatca aggaggcgac acagctggag gtggccatcg 3601 gtgatggcat ggagttcacg atacacggcg acatgaagaa caacaagccg aagaaatcca 3661 aatatctaaa taacgcaacg gacgacgaca ctgccagcat taactcatat ggtagccata 3721 agaatcgacc attcaaggat gagagccaca agggcagcgc cgagacgatg gagggcgagg 3781 agaagcggga cgccagcaag gaggatttag gtatcgatga ggagctcgac gaggagggcg 3841 aattggagga gggcccgctc gacggcgata tcatcataca tgccaacgat gaggatatac 3901 tcgatgaata tccagctgat tgctgccccg attcgtacta taagaaattt ccgatcttag 3961 ccggtgatga tgactcgccg ttctggcaag gatggggcaa tttacgactg aaaacttttc 4021 aattaattga aaataaatat tttgaaacag ctgttatcac tatgatttta atgagtagct 4081 tagctttggc attagaagat gtacatctgc cacaaagacc catactgcag gatattttat 4141 actatatgga cagaatattt acggttatat tcttcttgga aatgttaatc aagtggctgg 4201 cgctcggctt caaagtgtac ttcacgaacg cgtggtgctg gctcgatttc gtcattgtca 4261 tggtatcgct tatcaacttc gttgcttcac ttgttggagc tggtggtatt caagccttca 4321 agactatgcg aacgttaaga gcactgagac cactacgtgc catgtcccgt atgcagggca 4381 tgagggtcgt cgttaatgcg ctggtacaag ctataccgtc catcttcaat gtgctattgg 4441 tgtgtctaat attttggcta atttttgcca taatgggtgt acagcttttt gctggaaaat 4501 attttaagtg cgaggacatg aatggcacga agctcagcca cgagatcata ccaaatcgca 4561 atgcctgcga aagcgagaac tacacgtggg tgaattcagc aatgaatttc gatcatgtag 4621 gtaacgcgta tctgtgcctt ttccaagtgg ccaccttcaa aggctggata caaatcatga 4681 acgatgctat cgattcacga gaggtggaca agcagccaat tcgtgaaacg aacatctaca 4741 tgtatttata tttcgtattc ttcatcatat ttggatcatt tttcacactc aatctgttca 4801 ttggtgttat cattgataat tttaatgagc aaaagaaaaa agcaggtgga tcattagaaa 4861 tgttcatgac agaagatcag aaaaagtact ataatgctat gaaaaagatg ggctctaaaa 4921 aaccattaaa agccattcca agaccaaggt ggcgtccaca agcaatagtc tttgaaatag 4981 taaccgataa gaaattcgat atagtcataa tgttattcat tggtctgaac atgttcacca 5041 tgacactcga tcgttacgat gcgtcggaca cgtacaacgc ggtccttgac tatctcaatg 5101 cgatattcgt agttattttc agttccgaat gtctattaaa aatattcgct ttacgatatc 5161 actattttat tgagccatgg aatttatttg atgtagtagt tgtcatttta tccatcttag 5221 gtctcgtact tagcgatatt atcgagaaat acttcgtatc gccgacactg ctccgagtgg 5281 tgcgcgtggc caaagtgggt cgcgtactgc gtctggtgaa gggcgccaag ggtatacgaa 5341 cgctgctgtt cgccctggcc atgtcgctgc cggcgctgtt caacatctgc ctgctgctgt 5401 tcctggtcat gttcatcttc gcgatattcg gcatgtcgtt cttcatgcat gtgaaggaga 5461 agagcggcat caacgacgtc tacaacttca agacgttcgg acagagcatg atcctgctct 5521 ttcagatgtc tacctcagcc ggttgggatg gtgtactcga cgccattatc aatgaggaag 5581 catgcgatcc acccgacaac gacaaaggct atccgggcaa ttgtggttca gcgaccgttg 5641 gaataacgtt tctcctctca tacctagtta taagcttttt gatagttatt aatatgtaca 5701 ttgctgtcat tctcgagaac tatagtcagg ccaccgagga tgtgcaggag ggtctcaccg 5761 acgacgatta cgatatgtac tatgagatct ggcaacagtt cgatccggag ggcacccagt 5821 acatacgata cgaccagctg tccgagttcc tcgacgtgct ggagcccccg ctccagattc 5881 acaagcccaa caagtacaaa atcatatcga tggacatacc catctgtcgc ggtgacctca 5941 tgtactgtgt ggacatactg gacgcactga ccaaagactt tttcgcgcgc aaaggcaatc 6001 ccattgagga gacgggcgag attggtgaga ttgccgccag gccggacacc gagggctacg 6061 agcccgtctc ctccaccctc tggcgacagc gggaggagta ctgtgcccgc ctcattcaac 6121 atgcctggcg caagcataaa acgcgcgccg agggcggtgg tgcaccgtcc gacgcggaag 6181 gcgacggccc cgaagatggt gatgcgggtg gcggtggcgg ggcggcgctg atgctgggtg 6241 ttctggatgt tccagatgct gctggcgatg cagcaaccac tggctcccat gacggggcaa 6301 cggcactcga tcccgagacc gatccatcgg gagtaccggc ggcagcggcg gtggccccac 6361 agccagccgg tgacggcggc gagggaccgg atggaggagc aacagccgat ccgcacgaga 6421 gcaatgtaaa tagtccgacg atggacggcg cgacggcggg cagcccgggc gcagggagcg 6481 ctggcagcac tggccgacag acggccgttc tcgtggagag cgatgggttt gtgaccaaga 6541 acgggcacaa ggttgtaata cactcgcgtt cgccgagcat aacgtcgcgc acggcggatg 6601 tctgagccag gcctcgcccc cccctccaag atgcacgcga gtattaggtg caggtgcaga 6661 tgcagtgcag tggtggtgcc acaacaacaa caacaacaac agcaggtgcc actggtagct 6721 gcaattgcaa ctgcaacagc agcaacagga agaa