PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361517 6754 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X34, mRNA.
ACCESSION XM_022361517
VERSION XM_022361517.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361517.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6754
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6754
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 48 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6605
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X34"
/protein_id="XP_022217209.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL
TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI
MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM
GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL
MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS
GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP
WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA
AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM
SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYT
IRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNL
GSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTT
CLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQA
AGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQE
WISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATM
KLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPT
LNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNF
TDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLS
NFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSE
HGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNN
ATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELE
EGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQ
LIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKW
LALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSR
MQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHE
IIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQP
IRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYY
NAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDAS
DTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDI
IEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMF
IFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACD
PPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTD
DDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGD
LMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCAR
LIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTG
SHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATA
GSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 657..1511
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1866..2423
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2652..3287
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3363..4022
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4032..4847
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4815..4973
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4860..4871
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4995..5747
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5778..5921
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc
421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct
481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac
541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa
601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc
661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc
721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat
781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg
841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt
901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca
961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg
1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct
1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca
1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag
1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg
1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt
1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc
1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca
1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg
1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag
1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc
1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga
1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg
1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg
1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga
1861 gcacgacatc cttatcctta cctggttcac cgtttaacat acgcagggga tcacgtagtt
1921 ctcacaagta cacgatccgg aatggacgtg gacgctttgg tatacccggc agcgatcgca
1981 agccgttggt attgtcaaca tatcaggatg ctcagcagca cttgccctat gccgatgatt
2041 cgaacgctgt tacgcccatg tccgaggaga acggtgccat tatagtgccc gtttattatg
2101 gaaatctagg ctccaggcat tcatcgtata cttcgcatca gtccagaata tcgtatacct
2161 cacatggcga tctattgggc ggcatggccg tcatgggcgt cagcacaatg accaaggaga
2221 gcaaattgcg aaatcgcaac tcacgcaatc aatcagtggg cgccaccaat ggcggcacca
2281 cctgcctgga ccccaatcac aaggtcgagc atcgcgactt cgaaatcggt ctggagtgca
2341 cggacgaagc tggcaagatt aaacatcatg acaatccttt tatcgagccc gtccagacac
2401 aaacggtagt cgacatgaaa gatgtgatgg tactgaatga cattatcgaa caggccgctg
2461 gtcggcacag tcgggctagt gatcgcggtg tctccgttta ctatttccca acagaggacg
2521 atgatgagga tgggccgaca ttaaaagaca aggccctcga agcgctaatg aaaggcatcg
2581 aagtgttttg tgtgtgggac tgttgctggg tttggttgaa attgcaggag tggatatcgc
2641 tgatcgtctt cgatcccttt gtcgagctct tcatcacgct gtgcattgtg gtcaacacga
2701 tgttcatggc catggaccat cacgacatga acaaggagat ggaacgcatc cttaagtgcg
2761 gaaattattt cttcacggca acattcgcca ttgaggcaac catgaaactg tgcgccatga
2821 gccccaaata ctatttccag gagggctgga acatctttga cttcatcatt gtggcactct
2881 cattgctgga gctgggcctc gagggcgttc agggcctctc cgtcttgcgt tcgtttcgtt
2941 tgctgcgtgt attcaaattg gccaagtcct ggccaacact taatttactc atttcgatta
3001 tgggacgcac catgggcgct ttgggtaatc tgacatttgt actttgcatt atcatcttca
3061 tctttgcggt gatgggaatg caactgttcg gaaagaatta tcatgataac aaggatcgct
3121 tcccggacgg tgacctgccc cgctggaact tcaccgactt catgcacagc ttcatgatcg
3181 tgtttcgggt gctatgcggc gagtggatcg agtccatgtg ggactgtatg cacgtgggcg
3241 atgtatcgtg cattccattc ttcttggcca ccgttgtcat cggcaattta gtggttctta
3301 accttttctt agccctgctt ttgtcaaatt ttggttcatc tagcttatca gcgccgacag
3361 ccgataacga taccaataaa atagccgagg ccttcaatcg aattgggcga tttaaaagtt
3421 gggttaagcg taatattgct gattgtttca agttaatacg taacaaattg acaaatcaaa
3481 taagtgatca accatcagag cacggcgaca acgagctgga gctgggccac gacgagatac
3541 tcgccgacgg gctcatcaag aagggcatca aggaggcgac acagctggag gtggccatcg
3601 gtgatggcat ggagttcacg atacacggcg acatgaagaa caacaagccg aagaaatcca
3661 aatatctaaa taacgcaacg gacgacgaca ctgccagcat taactcatat ggtagccata
3721 agaatcgacc attcaaggat gagagccaca agggcagcgc cgagacgatg gagggcgagg
3781 agaagcggga cgccagcaag gaggatttag gtatcgatga ggagctcgac gaggagggcg
3841 aattggagga gggcccgctc gacggcgata tcatcataca tgccaacgat gaggatatac
3901 tcgatgaata tccagctgat tgctgccccg attcgtacta taagaaattt ccgatcttag
3961 ccggtgatga tgactcgccg ttctggcaag gatggggcaa tttacgactg aaaacttttc
4021 aattaattga aaataaatat tttgaaacag ctgttatcac tatgatttta atgagtagct
4081 tagctttggc attagaagat gtacatctgc cacaaagacc catactgcag gatattttat
4141 actatatgga cagaatattt acggttatat tcttcttgga aatgttaatc aagtggctgg
4201 cgctcggctt caaagtgtac ttcacgaacg cgtggtgctg gctcgatttc gtcattgtca
4261 tggtatcgct tatcaacttc gttgcttcac ttgttggagc tggtggtatt caagccttca
4321 agactatgcg aacgttaaga gcactgagac cactacgtgc catgtcccgt atgcagggca
4381 tgagggtcgt cgttaatgcg ctggtacaag ctataccgtc catcttcaat gtgctattgg
4441 tgtgtctaat attttggcta atttttgcca taatgggtgt acagcttttt gctggaaaat
4501 attttaagtg cgaggacatg aatggcacga agctcagcca cgagatcata ccaaatcgca
4561 atgcctgcga aagcgagaac tacacgtggg tgaattcagc aatgaatttc gatcatgtag
4621 gtaacgcgta tctgtgcctt ttccaagtgg ccaccttcaa aggctggata caaatcatga
4681 acgatgctat cgattcacga gaggtggaca agcagccaat tcgtgaaacg aacatctaca
4741 tgtatttata tttcgtattc ttcatcatat ttggatcatt tttcacactc aatctgttca
4801 ttggtgttat cattgataat tttaatgagc aaaagaaaaa agcaggtgga tcattagaaa
4861 tgttcatgac agaagatcag aaaaagtact ataatgctat gaaaaagatg ggctctaaaa
4921 aaccattaaa agccattcca agaccaaggt ggcgtccaca agcaatagtc tttgaaatag
4981 taaccgataa gaaattcgat atagtcataa tgttattcat tggtctgaac atgttcacca
5041 tgacactcga tcgttacgat gcgtcggaca cgtacaacgc ggtccttgac tatctcaatg
5101 cgatattcgt agttattttc agttccgaat gtctattaaa aatattcgct ttacgatatc
5161 actattttat tgagccatgg aatttatttg atgtagtagt tgtcatttta tccatcttag
5221 gtctcgtact tagcgatatt atcgagaaat acttcgtatc gccgacactg ctccgagtgg
5281 tgcgcgtggc caaagtgggt cgcgtactgc gtctggtgaa gggcgccaag ggtatacgaa
5341 cgctgctgtt cgccctggcc atgtcgctgc cggcgctgtt caacatctgc ctgctgctgt
5401 tcctggtcat gttcatcttc gcgatattcg gcatgtcgtt cttcatgcat gtgaaggaga
5461 agagcggcat caacgacgtc tacaacttca agacgttcgg acagagcatg atcctgctct
5521 ttcagatgtc tacctcagcc ggttgggatg gtgtactcga cgccattatc aatgaggaag
5581 catgcgatcc acccgacaac gacaaaggct atccgggcaa ttgtggttca gcgaccgttg
5641 gaataacgtt tctcctctca tacctagtta taagcttttt gatagttatt aatatgtaca
5701 ttgctgtcat tctcgagaac tatagtcagg ccaccgagga tgtgcaggag ggtctcaccg
5761 acgacgatta cgatatgtac tatgagatct ggcaacagtt cgatccggag ggcacccagt
5821 acatacgata cgaccagctg tccgagttcc tcgacgtgct ggagcccccg ctccagattc
5881 acaagcccaa caagtacaaa atcatatcga tggacatacc catctgtcgc ggtgacctca
5941 tgtactgtgt ggacatactg gacgcactga ccaaagactt tttcgcgcgc aaaggcaatc
6001 ccattgagga gacgggcgag attggtgaga ttgccgccag gccggacacc gagggctacg
6061 agcccgtctc ctccaccctc tggcgacagc gggaggagta ctgtgcccgc ctcattcaac
6121 atgcctggcg caagcataaa acgcgcgccg agggcggtgg tgcaccgtcc gacgcggaag
6181 gcgacggccc cgaagatggt gatgcgggtg gcggtggcgg ggcggcgctg atgctgggtg
6241 ttctggatgt tccagatgct gctggcgatg cagcaaccac tggctcccat gacggggcaa
6301 cggcactcga tcccgagacc gatccatcgg gagtaccggc ggcagcggcg gtggccccac
6361 agccagccgg tgacggcggc gagggaccgg atggaggagc aacagccgat ccgcacgaga
6421 gcaatgtaaa tagtccgacg atggacggcg cgacggcggg cagcccgggc gcagggagcg
6481 ctggcagcac tggccgacag acggccgttc tcgtggagag cgatgggttt gtgaccaaga
6541 acgggcacaa ggttgtaata cactcgcgtt cgccgagcat aacgtcgcgc acggcggatg
6601 tctgagccag gcctcgcccc cccctccaag atgcacgcga gtattaggtg caggtgcaga
6661 tgcagtgcag tggtggtgcc acaacaacaa caacaacaac agcaggtgcc actggtagct
6721 gcaattgcaa ctgcaacagc agcaacagga agaa