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LOCUS XM_022361516 6754 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X33, mRNA. ACCESSION XM_022361516 VERSION XM_022361516.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361516.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6754 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6754 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6605 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X33" /protein_id="XP_022217208.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEH RDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR GVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPF VELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYY FQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGR TMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIV FRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAP TADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCISAE HGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNN ATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELE EGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQ LIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKW LALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSR MQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHE IIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQP IRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYY NAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDAS DTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDI IEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMF IFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACD PPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTD DDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGD LMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCAR LIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTG SHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATA GSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1893..2393 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2622..3257 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3333..4022 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4032..4847 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4815..4973 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4860..4871 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 4995..5747 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5778..5921 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgta cacgatccgg aatggacgtg 1921 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 1981 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2041 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2101 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2161 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2221 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2281 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2341 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2401 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2461 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca 2521 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg 2581 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct 2641 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga 2701 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca 2761 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga 2821 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc 2881 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct 2941 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc 3001 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg 3061 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact 3121 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg 3181 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca 3241 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt 3301 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg 3361 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca 3421 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcaggc aaaggcgttt 3481 gtcgttgtat atctgcagag cacggcgaca acgagctgga gctgggccac gacgagatac 3541 tcgccgacgg gctcatcaag aagggcatca aggaggcgac acagctggag gtggccatcg 3601 gtgatggcat ggagttcacg atacacggcg acatgaagaa caacaagccg aagaaatcca 3661 aatatctaaa taacgcaacg gacgacgaca ctgccagcat taactcatat ggtagccata 3721 agaatcgacc attcaaggat gagagccaca agggcagcgc cgagacgatg gagggcgagg 3781 agaagcggga cgccagcaag gaggatttag gtatcgatga ggagctcgac gaggagggcg 3841 aattggagga gggcccgctc gacggcgata tcatcataca tgccaacgat gaggatatac 3901 tcgatgaata tccagctgat tgctgccccg attcgtacta taagaaattt ccgatcttag 3961 ccggtgatga tgactcgccg ttctggcaag gatggggcaa tttacgactg aaaacttttc 4021 aattaattga aaataaatat tttgaaacag ctgttatcac tatgatttta atgagtagct 4081 tagctttggc attagaagat gtacatctgc cacaaagacc catactgcag gatattttat 4141 actatatgga cagaatattt acggttatat tcttcttgga aatgttaatc aagtggctgg 4201 cgctcggctt caaagtgtac ttcacgaacg cgtggtgctg gctcgatttc gtcattgtca 4261 tggtatcgct tatcaacttc gttgcttcac ttgttggagc tggtggtatt caagccttca 4321 agactatgcg aacgttaaga gcactgagac cactacgtgc catgtcccgt atgcagggca 4381 tgagggtcgt cgttaatgcg ctggtacaag ctataccgtc catcttcaat gtgctattgg 4441 tgtgtctaat attttggcta atttttgcca taatgggtgt acagcttttt gctggaaaat 4501 attttaagtg cgaggacatg aatggcacga agctcagcca cgagatcata ccaaatcgca 4561 atgcctgcga aagcgagaac tacacgtggg tgaattcagc aatgaatttc gatcatgtag 4621 gtaacgcgta tctgtgcctt ttccaagtgg ccaccttcaa aggctggata caaatcatga 4681 acgatgctat cgattcacga gaggtggaca agcagccaat tcgtgaaacg aacatctaca 4741 tgtatttata tttcgtattc ttcatcatat ttggatcatt tttcacactc aatctgttca 4801 ttggtgttat cattgataat tttaatgagc aaaagaaaaa agcaggtgga tcattagaaa 4861 tgttcatgac agaagatcag aaaaagtact ataatgctat gaaaaagatg ggctctaaaa 4921 aaccattaaa agccattcca agaccaaggt ggcgtccaca agcaatagtc tttgaaatag 4981 taaccgataa gaaattcgat atagtcataa tgttattcat tggtctgaac atgttcacca 5041 tgacactcga tcgttacgat gcgtcggaca cgtacaacgc ggtccttgac tatctcaatg 5101 cgatattcgt agttattttc agttccgaat gtctattaaa aatattcgct ttacgatatc 5161 actattttat tgagccatgg aatttatttg atgtagtagt tgtcatttta tccatcttag 5221 gtctcgtact tagcgatatt atcgagaaat acttcgtatc gccgacactg ctccgagtgg 5281 tgcgcgtggc caaagtgggt cgcgtactgc gtctggtgaa gggcgccaag ggtatacgaa 5341 cgctgctgtt cgccctggcc atgtcgctgc cggcgctgtt caacatctgc ctgctgctgt 5401 tcctggtcat gttcatcttc gcgatattcg gcatgtcgtt cttcatgcat gtgaaggaga 5461 agagcggcat caacgacgtc tacaacttca agacgttcgg acagagcatg atcctgctct 5521 ttcagatgtc tacctcagcc ggttgggatg gtgtactcga cgccattatc aatgaggaag 5581 catgcgatcc acccgacaac gacaaaggct atccgggcaa ttgtggttca gcgaccgttg 5641 gaataacgtt tctcctctca tacctagtta taagcttttt gatagttatt aatatgtaca 5701 ttgctgtcat tctcgagaac tatagtcagg ccaccgagga tgtgcaggag ggtctcaccg 5761 acgacgatta cgatatgtac tatgagatct ggcaacagtt cgatccggag ggcacccagt 5821 acatacgata cgaccagctg tccgagttcc tcgacgtgct ggagcccccg ctccagattc 5881 acaagcccaa caagtacaaa atcatatcga tggacatacc catctgtcgc ggtgacctca 5941 tgtactgtgt ggacatactg gacgcactga ccaaagactt tttcgcgcgc aaaggcaatc 6001 ccattgagga gacgggcgag attggtgaga ttgccgccag gccggacacc gagggctacg 6061 agcccgtctc ctccaccctc tggcgacagc gggaggagta ctgtgcccgc ctcattcaac 6121 atgcctggcg caagcataaa acgcgcgccg agggcggtgg tgcaccgtcc gacgcggaag 6181 gcgacggccc cgaagatggt gatgcgggtg gcggtggcgg ggcggcgctg atgctgggtg 6241 ttctggatgt tccagatgct gctggcgatg cagcaaccac tggctcccat gacggggcaa 6301 cggcactcga tcccgagacc gatccatcgg gagtaccggc ggcagcggcg gtggccccac 6361 agccagccgg tgacggcggc gagggaccgg atggaggagc aacagccgat ccgcacgaga 6421 gcaatgtaaa tagtccgacg atggacggcg cgacggcggg cagcccgggc gcagggagcg 6481 ctggcagcac tggccgacag acggccgttc tcgtggagag cgatgggttt gtgaccaaga 6541 acgggcacaa ggttgtaata cactcgcgtt cgccgagcat aacgtcgcgc acggcggatg 6601 tctgagccag gcctcgcccc cccctccaag atgcacgcga gtattaggtg caggtgcaga 6661 tgcagtgcag tggtggtgcc acaacaacaa caacaacaac agcaggtgcc actggtagct 6721 gcaattgcaa ctgcaacagc agcaacagga agaa