PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361516 6754 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X33, mRNA.
ACCESSION XM_022361516
VERSION XM_022361516.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361516.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6754
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6754
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 46 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 5 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6605
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X33"
/protein_id="XP_022217208.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI
PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH
QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEH
RDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR
GVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPF
VELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYY
FQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGR
TMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIV
FRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAP
TADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCISAE
HGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNN
ATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELE
EGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQ
LIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKW
LALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSR
MQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHE
IIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQP
IRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYY
NAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDAS
DTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDI
IEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMF
IFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACD
PPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTD
DDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGD
LMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCAR
LIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTG
SHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATA
GSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1893..2393
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2622..3257
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3333..4022
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4032..4847
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4815..4973
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4860..4871
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 4995..5747
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5778..5921
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca
1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgta cacgatccgg aatggacgtg
1921 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg
1981 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga
2041 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata
2101 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg
2161 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc
2221 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc
2281 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg
2341 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg
2401 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg
2461 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca
2521 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg
2581 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct
2641 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga
2701 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca
2761 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga
2821 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc
2881 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct
2941 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc
3001 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg
3061 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact
3121 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg
3181 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca
3241 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt
3301 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg
3361 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca
3421 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcaggc aaaggcgttt
3481 gtcgttgtat atctgcagag cacggcgaca acgagctgga gctgggccac gacgagatac
3541 tcgccgacgg gctcatcaag aagggcatca aggaggcgac acagctggag gtggccatcg
3601 gtgatggcat ggagttcacg atacacggcg acatgaagaa caacaagccg aagaaatcca
3661 aatatctaaa taacgcaacg gacgacgaca ctgccagcat taactcatat ggtagccata
3721 agaatcgacc attcaaggat gagagccaca agggcagcgc cgagacgatg gagggcgagg
3781 agaagcggga cgccagcaag gaggatttag gtatcgatga ggagctcgac gaggagggcg
3841 aattggagga gggcccgctc gacggcgata tcatcataca tgccaacgat gaggatatac
3901 tcgatgaata tccagctgat tgctgccccg attcgtacta taagaaattt ccgatcttag
3961 ccggtgatga tgactcgccg ttctggcaag gatggggcaa tttacgactg aaaacttttc
4021 aattaattga aaataaatat tttgaaacag ctgttatcac tatgatttta atgagtagct
4081 tagctttggc attagaagat gtacatctgc cacaaagacc catactgcag gatattttat
4141 actatatgga cagaatattt acggttatat tcttcttgga aatgttaatc aagtggctgg
4201 cgctcggctt caaagtgtac ttcacgaacg cgtggtgctg gctcgatttc gtcattgtca
4261 tggtatcgct tatcaacttc gttgcttcac ttgttggagc tggtggtatt caagccttca
4321 agactatgcg aacgttaaga gcactgagac cactacgtgc catgtcccgt atgcagggca
4381 tgagggtcgt cgttaatgcg ctggtacaag ctataccgtc catcttcaat gtgctattgg
4441 tgtgtctaat attttggcta atttttgcca taatgggtgt acagcttttt gctggaaaat
4501 attttaagtg cgaggacatg aatggcacga agctcagcca cgagatcata ccaaatcgca
4561 atgcctgcga aagcgagaac tacacgtggg tgaattcagc aatgaatttc gatcatgtag
4621 gtaacgcgta tctgtgcctt ttccaagtgg ccaccttcaa aggctggata caaatcatga
4681 acgatgctat cgattcacga gaggtggaca agcagccaat tcgtgaaacg aacatctaca
4741 tgtatttata tttcgtattc ttcatcatat ttggatcatt tttcacactc aatctgttca
4801 ttggtgttat cattgataat tttaatgagc aaaagaaaaa agcaggtgga tcattagaaa
4861 tgttcatgac agaagatcag aaaaagtact ataatgctat gaaaaagatg ggctctaaaa
4921 aaccattaaa agccattcca agaccaaggt ggcgtccaca agcaatagtc tttgaaatag
4981 taaccgataa gaaattcgat atagtcataa tgttattcat tggtctgaac atgttcacca
5041 tgacactcga tcgttacgat gcgtcggaca cgtacaacgc ggtccttgac tatctcaatg
5101 cgatattcgt agttattttc agttccgaat gtctattaaa aatattcgct ttacgatatc
5161 actattttat tgagccatgg aatttatttg atgtagtagt tgtcatttta tccatcttag
5221 gtctcgtact tagcgatatt atcgagaaat acttcgtatc gccgacactg ctccgagtgg
5281 tgcgcgtggc caaagtgggt cgcgtactgc gtctggtgaa gggcgccaag ggtatacgaa
5341 cgctgctgtt cgccctggcc atgtcgctgc cggcgctgtt caacatctgc ctgctgctgt
5401 tcctggtcat gttcatcttc gcgatattcg gcatgtcgtt cttcatgcat gtgaaggaga
5461 agagcggcat caacgacgtc tacaacttca agacgttcgg acagagcatg atcctgctct
5521 ttcagatgtc tacctcagcc ggttgggatg gtgtactcga cgccattatc aatgaggaag
5581 catgcgatcc acccgacaac gacaaaggct atccgggcaa ttgtggttca gcgaccgttg
5641 gaataacgtt tctcctctca tacctagtta taagcttttt gatagttatt aatatgtaca
5701 ttgctgtcat tctcgagaac tatagtcagg ccaccgagga tgtgcaggag ggtctcaccg
5761 acgacgatta cgatatgtac tatgagatct ggcaacagtt cgatccggag ggcacccagt
5821 acatacgata cgaccagctg tccgagttcc tcgacgtgct ggagcccccg ctccagattc
5881 acaagcccaa caagtacaaa atcatatcga tggacatacc catctgtcgc ggtgacctca
5941 tgtactgtgt ggacatactg gacgcactga ccaaagactt tttcgcgcgc aaaggcaatc
6001 ccattgagga gacgggcgag attggtgaga ttgccgccag gccggacacc gagggctacg
6061 agcccgtctc ctccaccctc tggcgacagc gggaggagta ctgtgcccgc ctcattcaac
6121 atgcctggcg caagcataaa acgcgcgccg agggcggtgg tgcaccgtcc gacgcggaag
6181 gcgacggccc cgaagatggt gatgcgggtg gcggtggcgg ggcggcgctg atgctgggtg
6241 ttctggatgt tccagatgct gctggcgatg cagcaaccac tggctcccat gacggggcaa
6301 cggcactcga tcccgagacc gatccatcgg gagtaccggc ggcagcggcg gtggccccac
6361 agccagccgg tgacggcggc gagggaccgg atggaggagc aacagccgat ccgcacgaga
6421 gcaatgtaaa tagtccgacg atggacggcg cgacggcggg cagcccgggc gcagggagcg
6481 ctggcagcac tggccgacag acggccgttc tcgtggagag cgatgggttt gtgaccaaga
6541 acgggcacaa ggttgtaata cactcgcgtt cgccgagcat aacgtcgcgc acggcggatg
6601 tctgagccag gcctcgcccc cccctccaag atgcacgcga gtattaggtg caggtgcaga
6661 tgcagtgcag tggtggtgcc acaacaacaa caacaacaac agcaggtgcc actggtagct
6721 gcaattgcaa ctgcaacagc agcaacagga agaa