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LOCUS XM_022361515 6760 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X31, mRNA. ACCESSION XM_022361515 VERSION XM_022361515.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361515.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6760 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6760 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6611 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X31" /protein_id="XP_022217207.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYT IRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNL GSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTT CLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQA AGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFD PFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPK YYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIM GRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFM IVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLS APTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCIS AEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYL NNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGE LEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKT FQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLI KWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAM SRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLS HEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDK QPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKK YYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYD ASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLS DIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLV MFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEA CDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGL TDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICR GDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYC ARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAAT TGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGA TAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 657..1511 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1866..2423 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2628..3263 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3339..4028 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4038..4853 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4821..4979 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4866..4877 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5001..5753 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5784..5927 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc 421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct 481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac 541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa 601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc 661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc 721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat 781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg 841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt 901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca 961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg 1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct 1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca 1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag 1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg 1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt 1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc 1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca 1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg 1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag 1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc 1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga 1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg 1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg 1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga 1861 gcacgacatc cttatcctta cctggttcac cgtttaacat acgcagggga tcacgtagtt 1921 ctcacaagta cacgatccgg aatggacgtg gacgctttgg tatacccggc agcgatcgca 1981 agccgttggt attgtcaaca tatcaggatg ctcagcagca cttgccctat gccgatgatt 2041 cgaacgctgt tacgcccatg tccgaggaga acggtgccat tatagtgccc gtttattatg 2101 gaaatctagg ctccaggcat tcatcgtata cttcgcatca gtccagaata tcgtatacct 2161 cacatggcga tctattgggc ggcatggccg tcatgggcgt cagcacaatg accaaggaga 2221 gcaaattgcg aaatcgcaac tcacgcaatc aatcagtggg cgccaccaat ggcggcacca 2281 cctgcctgga ccccaatcac aaggtcgagc atcgcgactt cgaaatcggt ctggagtgca 2341 cggacgaagc tggcaagatt aaacatcatg acaatccttt tatcgagccc gtccagacac 2401 aaacggtagt cgacatgaaa gatgtgatgg tactgaatga cattatcgaa caggccgctg 2461 gtcggcacag tcgggctagt gatcgcggtg aggacgatga tgaggatggg ccgacattaa 2521 aagacaaggc cctcgaagcg ctaatgaaag gcatcgaagt gttttgtgtg tgggactgtt 2581 gctgggtttg gttgaaattg caggagtgga tatcgctgat cgtcttcgat ccctttgtcg 2641 agctcttcat cacgctgtgc attgtggtca acacgatgtt catggccatg gaccatcacg 2701 acatgaacaa ggagatggaa cgcatcctta agtgcggaaa ttatttcttc acggcaacat 2761 tcgccattga ggcaaccatg aaactgtgcg ccatgagccc caaatactat ttccaggagg 2821 gctggaacat ctttgacttc atcattgtgg cactctcatt gctggagctg ggcctcgagg 2881 gcgttcaggg cctctccgtc ttgcgttcgt ttcgtttgct gcgtgtattc aaattggcca 2941 agtcctggcc aacacttaat ttactcattt cgattatggg acgcaccatg ggcgctttgg 3001 gtaatctgac atttgtactt tgcattatca tcttcatctt tgcggtgatg ggaatgcaac 3061 tgttcggaaa gaattatcat gataacaagg atcgcttccc ggacggtgac ctgccccgct 3121 ggaacttcac cgacttcatg cacagcttca tgatcgtgtt tcgggtgcta tgcggcgagt 3181 ggatcgagtc catgtgggac tgtatgcacg tgggcgatgt atcgtgcatt ccattcttct 3241 tggccaccgt tgtcatcggc aatttagtgg ttcttaacct tttcttagcc ctgcttttgt 3301 caaattttgg ttcatctagc ttatcagcgc cgacagccga taacgatacc aataaaatag 3361 ccgaggcctt caatcgaatt gggcgattta aaagttgggt taagcgtaat attgctgatt 3421 gtttcaagtt aatacgtaac aaattgacaa atcaaataag tgatcaacca tcaggcaaag 3481 gcgtttgtcg ttgtatatct gcagagcacg gcgacaacga gctggagctg ggccacgacg 3541 agatactcgc cgacgggctc atcaagaagg gcatcaagga ggcgacacag ctggaggtgg 3601 ccatcggtga tggcatggag ttcacgatac acggcgacat gaagaacaac aagccgaaga 3661 aatccaaata tctaaataac gcaacggacg acgacactgc cagcattaac tcatatggta 3721 gccataagaa tcgaccattc aaggatgaga gccacaaggg cagcgccgag acgatggagg 3781 gcgaggagaa gcgggacgcc agcaaggagg atttaggtat cgatgaggag ctcgacgagg 3841 agggcgaatt ggaggagggc ccgctcgacg gcgatatcat catacatgcc aacgatgagg 3901 atatactcga tgaatatcca gctgattgct gccccgattc gtactataag aaatttccga 3961 tcttagccgg tgatgatgac tcgccgttct ggcaaggatg gggcaattta cgactgaaaa 4021 cttttcaatt aattgaaaat aaatattttg aaacagctgt tatcactatg attttaatga 4081 gtagcttagc tttggcatta gaagatgtac atctgccaca aagacccata ctgcaggata 4141 ttttatacta tatggacaga atatttacgg ttatattctt cttggaaatg ttaatcaagt 4201 ggctggcgct cggcttcaaa gtgtacttca cgaacgcgtg gtgctggctc gatttcgtca 4261 ttgtcatggt atcgcttatc aacttcgttg cttcacttgt tggagctggt ggtattcaag 4321 ccttcaagac tatgcgaacg ttaagagcac tgagaccact acgtgccatg tcccgtatgc 4381 agggcatgag ggtcgtcgtt aatgcgctgg tacaagctat accgtccatc ttcaatgtgc 4441 tattggtgtg tctaatattt tggctaattt ttgccataat gggtgtacag ctttttgctg 4501 gaaaatattt taagtgcgag gacatgaatg gcacgaagct cagccacgag atcataccaa 4561 atcgcaatgc ctgcgaaagc gagaactaca cgtgggtgaa ttcagcaatg aatttcgatc 4621 atgtaggtaa cgcgtatctg tgccttttcc aagtggccac cttcaaaggc tggatacaaa 4681 tcatgaacga tgctatcgat tcacgagagg tggacaagca gccaattcgt gaaacgaaca 4741 tctacatgta tttatatttc gtattcttca tcatatttgg atcatttttc acactcaatc 4801 tgttcattgg tgttatcatt gataatttta atgagcaaaa gaaaaaagca ggtggatcat 4861 tagaaatgtt catgacagaa gatcagaaaa agtactataa tgctatgaaa aagatgggct 4921 ctaaaaaacc attaaaagcc attccaagac caaggtggcg tccacaagca atagtctttg 4981 aaatagtaac cgataagaaa ttcgatatag tcataatgtt attcattggt ctgaacatgt 5041 tcaccatgac actcgatcgt tacgatgcgt cggacacgta caacgcggtc cttgactatc 5101 tcaatgcgat attcgtagtt attttcagtt ccgaatgtct attaaaaata ttcgctttac 5161 gatatcacta ttttattgag ccatggaatt tatttgatgt agtagttgtc attttatcca 5221 tcttaggtct cgtacttagc gatattatcg agaaatactt cgtatcgccg acactgctcc 5281 gagtggtgcg cgtggccaaa gtgggtcgcg tactgcgtct ggtgaagggc gccaagggta 5341 tacgaacgct gctgttcgcc ctggccatgt cgctgccggc gctgttcaac atctgcctgc 5401 tgctgttcct ggtcatgttc atcttcgcga tattcggcat gtcgttcttc atgcatgtga 5461 aggagaagag cggcatcaac gacgtctaca acttcaagac gttcggacag agcatgatcc 5521 tgctctttca gatgtctacc tcagccggtt gggatggtgt actcgacgcc attatcaatg 5581 aggaagcatg cgatccaccc gacaacgaca aaggctatcc gggcaattgt ggttcagcga 5641 ccgttggaat aacgtttctc ctctcatacc tagttataag ctttttgata gttattaata 5701 tgtacattgc tgtcattctc gagaactata gtcaggccac cgaggatgtg caggagggtc 5761 tcaccgacga cgattacgat atgtactatg agatctggca acagttcgat ccggagggca 5821 cccagtacat acgatacgac cagctgtccg agttcctcga cgtgctggag cccccgctcc 5881 agattcacaa gcccaacaag tacaaaatca tatcgatgga catacccatc tgtcgcggtg 5941 acctcatgta ctgtgtggac atactggacg cactgaccaa agactttttc gcgcgcaaag 6001 gcaatcccat tgaggagacg ggcgagattg gtgagattgc cgccaggccg gacaccgagg 6061 gctacgagcc cgtctcctcc accctctggc gacagcggga ggagtactgt gcccgcctca 6121 ttcaacatgc ctggcgcaag cataaaacgc gcgccgaggg cggtggtgca ccgtccgacg 6181 cggaaggcga cggccccgaa gatggtgatg cgggtggcgg tggcggggcg gcgctgatgc 6241 tgggtgttct ggatgttcca gatgctgctg gcgatgcagc aaccactggc tcccatgacg 6301 gggcaacggc actcgatccc gagaccgatc catcgggagt accggcggca gcggcggtgg 6361 ccccacagcc agccggtgac ggcggcgagg gaccggatgg aggagcaaca gccgatccgc 6421 acgagagcaa tgtaaatagt ccgacgatgg acggcgcgac ggcgggcagc ccgggcgcag 6481 ggagcgctgg cagcactggc cgacagacgg ccgttctcgt ggagagcgat gggtttgtga 6541 ccaagaacgg gcacaaggtt gtaatacact cgcgttcgcc gagcataacg tcgcgcacgg 6601 cggatgtctg agccaggcct cgcccccccc tccaagatgc acgcgagtat taggtgcagg 6661 tgcagatgca gtgcagtggt ggtgccacaa caacaacaac aacaacagca ggtgccactg 6721 gtagctgcaa ttgcaactgc aacagcagca acaggaagaa