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LOCUS XM_022361513 6763 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X30, mRNA. ACCESSION XM_022361513 VERSION XM_022361513.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361513.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6763 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6763 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6614 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X30" /protein_id="XP_022217205.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLK LQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIE ATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKS WPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPR WNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLAL LLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQ PSEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKY LNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEG ELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLK TFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEML IKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRA MSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKL SHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVD KQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQK KYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRY DASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVL SDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFL VMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEE ACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEG LTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPIC RGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEY CARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAA TTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDG ATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2661..3296 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3372..4031 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4041..4856 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4824..4982 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4869..4880 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5004..5756 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5787..5930 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgaggacga tgatgaggat gggccgacat taaaagacaa ggccctcgaa gcgctaatga 2581 aaggcatcga agtgttttgt gtgtgggact gttgctgggt ttggttgaaa ttgcaggagt 2641 ggatatcgct gatcgtcttc gatccctttg tcgagctctt catcacgctg tgcattgtgg 2701 tcaacacgat gttcatggcc atggaccatc acgacatgaa caaggagatg gaacgcatcc 2761 ttaagtgcgg aaattatttc ttcacggcaa cattcgccat tgaggcaacc atgaaactgt 2821 gcgccatgag ccccaaatac tatttccagg agggctggaa catctttgac ttcatcattg 2881 tggcactctc attgctggag ctgggcctcg agggcgttca gggcctctcc gtcttgcgtt 2941 cgtttcgttt gctgcgtgta ttcaaattgg ccaagtcctg gccaacactt aatttactca 3001 tttcgattat gggacgcacc atgggcgctt tgggtaatct gacatttgta ctttgcatta 3061 tcatcttcat ctttgcggtg atgggaatgc aactgttcgg aaagaattat catgataaca 3121 aggatcgctt cccggacggt gacctgcccc gctggaactt caccgacttc atgcacagct 3181 tcatgatcgt gtttcgggtg ctatgcggcg agtggatcga gtccatgtgg gactgtatgc 3241 acgtgggcga tgtatcgtgc attccattct tcttggccac cgttgtcatc ggcaatttag 3301 tggttcttaa ccttttctta gccctgcttt tgtcaaattt tggttcatct agcttatcag 3361 cgccgacagc cgataacgat accaataaaa tagccgaggc cttcaatcga attgggcgat 3421 ttaaaagttg ggttaagcgt aatattgctg attgtttcaa gttaatacgt aacaaattga 3481 caaatcaaat aagtgatcaa ccatcagagc acggcgacaa cgagctggag ctgggccacg 3541 acgagatact cgccgacggg ctcatcaaga agggcatcaa ggaggcgaca cagctggagg 3601 tggccatcgg tgatggcatg gagttcacga tacacggcga catgaagaac aacaagccga 3661 agaaatccaa atatctaaat aacgcaacgg acgacgacac tgccagcatt aactcatatg 3721 gtagccataa gaatcgacca ttcaaggatg agagccacaa gggcagcgcc gagacgatgg 3781 agggcgagga gaagcgggac gccagcaagg aggatttagg tatcgatgag gagctcgacg 3841 aggagggcga attggaggag ggcccgctcg acggcgatat catcatacat gccaacgatg 3901 aggatatact cgatgaatat ccagctgatt gctgccccga ttcgtactat aagaaatttc 3961 cgatcttagc cggtgatgat gactcgccgt tctggcaagg atggggcaat ttacgactga 4021 aaacttttca attaattgaa aataaatatt ttgaaacagc tgttatcact atgattttaa 4081 tgagtagctt agctttggca ttagaagatg tacatctgcc acaaagaccc atactgcagg 4141 atattttata ctatatggac agaatattta cggttatatt cttcttggaa atgttaatca 4201 agtggctggc gctcggcttc aaagtgtact tcacgaacgc gtggtgctgg ctcgatttcg 4261 tcattgtcat ggtatcgctt atcaacttcg ttgcttcact tgttggagct ggtggtattc 4321 aagccttcaa gactatgcga acgttaagag cactgagacc actacgtgcc atgtcccgta 4381 tgcagggcat gagggtcgtc gttaatgcgc tggtacaagc tataccgtcc atcttcaatg 4441 tgctattggt gtgtctaata ttttggctaa tttttgccat aatgggtgta cagctttttg 4501 ctggaaaata ttttaagtgc gaggacatga atggcacgaa gctcagccac gagatcatac 4561 caaatcgcaa tgcctgcgaa agcgagaact acacgtgggt gaattcagca atgaatttcg 4621 atcatgtagg taacgcgtat ctgtgccttt tccaagtggc caccttcaaa ggctggatac 4681 aaatcatgaa cgatgctatc gattcacgag aggtggacaa gcagccaatt cgtgaaacga 4741 acatctacat gtatttatat ttcgtattct tcatcatatt tggatcattt ttcacactca 4801 atctgttcat tggtgttatc attgataatt ttaatgagca aaagaaaaaa gcaggtggat 4861 cattagaaat gttcatgaca gaagatcaga aaaagtacta taatgctatg aaaaagatgg 4921 gctctaaaaa accattaaaa gccattccaa gaccaaggtg gcgtccacaa gcaatagtct 4981 ttgaaatagt aaccgataag aaattcgata tagtcataat gttattcatt ggtctgaaca 5041 tgttcaccat gacactcgat cgttacgatg cgtcggacac gtacaacgcg gtccttgact 5101 atctcaatgc gatattcgta gttattttca gttccgaatg tctattaaaa atattcgctt 5161 tacgatatca ctattttatt gagccatgga atttatttga tgtagtagtt gtcattttat 5221 ccatcttagg tctcgtactt agcgatatta tcgagaaata cttcgtatcg ccgacactgc 5281 tccgagtggt gcgcgtggcc aaagtgggtc gcgtactgcg tctggtgaag ggcgccaagg 5341 gtatacgaac gctgctgttc gccctggcca tgtcgctgcc ggcgctgttc aacatctgcc 5401 tgctgctgtt cctggtcatg ttcatcttcg cgatattcgg catgtcgttc ttcatgcatg 5461 tgaaggagaa gagcggcatc aacgacgtct acaacttcaa gacgttcgga cagagcatga 5521 tcctgctctt tcagatgtct acctcagccg gttgggatgg tgtactcgac gccattatca 5581 atgaggaagc atgcgatcca cccgacaacg acaaaggcta tccgggcaat tgtggttcag 5641 cgaccgttgg aataacgttt ctcctctcat acctagttat aagctttttg atagttatta 5701 atatgtacat tgctgtcatt ctcgagaact atagtcaggc caccgaggat gtgcaggagg 5761 gtctcaccga cgacgattac gatatgtact atgagatctg gcaacagttc gatccggagg 5821 gcacccagta catacgatac gaccagctgt ccgagttcct cgacgtgctg gagcccccgc 5881 tccagattca caagcccaac aagtacaaaa tcatatcgat ggacataccc atctgtcgcg 5941 gtgacctcat gtactgtgtg gacatactgg acgcactgac caaagacttt ttcgcgcgca 6001 aaggcaatcc cattgaggag acgggcgaga ttggtgagat tgccgccagg ccggacaccg 6061 agggctacga gcccgtctcc tccaccctct ggcgacagcg ggaggagtac tgtgcccgcc 6121 tcattcaaca tgcctggcgc aagcataaaa cgcgcgccga gggcggtggt gcaccgtccg 6181 acgcggaagg cgacggcccc gaagatggtg atgcgggtgg cggtggcggg gcggcgctga 6241 tgctgggtgt tctggatgtt ccagatgctg ctggcgatgc agcaaccact ggctcccatg 6301 acggggcaac ggcactcgat cccgagaccg atccatcggg agtaccggcg gcagcggcgg 6361 tggccccaca gccagccggt gacggcggcg agggaccgga tggaggagca acagccgatc 6421 cgcacgagag caatgtaaat agtccgacga tggacggcgc gacggcgggc agcccgggcg 6481 cagggagcgc tggcagcact ggccgacaga cggccgttct cgtggagagc gatgggtttg 6541 tgaccaagaa cgggcacaag gttgtaatac actcgcgttc gccgagcata acgtcgcgca 6601 cggcggatgt ctgagccagg cctcgccccc ccctccaaga tgcacgcgag tattaggtgc 6661 aggtgcagat gcagtgcagt ggtggtgcca caacaacaac aacaacaaca gcaggtgcca 6721 ctggtagctg caattgcaac tgcaacagca gcaacaggaa gaa