PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361512 6763 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X29, mRNA.
ACCESSION XM_022361512
VERSION XM_022361512.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361512.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6763
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6763
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 43 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 8 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6614
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X29"
/protein_id="XP_022217204.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI
PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH
QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEH
RDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR
GVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPF
VELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYY
FQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGR
TMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIV
FRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAP
TADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIW
SEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKY
LNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEG
ELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLK
TFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEML
IKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRA
MSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKL
SHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVD
KQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQK
KYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRY
DASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVL
SDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFL
VMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEE
ACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEG
LTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPIC
RGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEY
CARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAA
TTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDG
ATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1893..2393
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2622..3257
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3333..4031
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4041..4856
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4824..4982
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4869..4880
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5004..5756
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5787..5930
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca
1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgta cacgatccgg aatggacgtg
1921 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg
1981 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga
2041 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata
2101 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg
2161 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc
2221 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc
2281 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg
2341 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg
2401 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg
2461 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca
2521 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg
2581 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct
2641 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga
2701 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca
2761 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga
2821 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc
2881 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct
2941 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc
3001 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg
3061 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact
3121 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg
3181 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca
3241 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt
3301 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg
3361 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca
3421 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcaggt gagaggacca
3481 accagatcag ttggatttgg agcgaagagc acggcgacaa cgagctggag ctgggccacg
3541 acgagatact cgccgacggg ctcatcaaga agggcatcaa ggaggcgaca cagctggagg
3601 tggccatcgg tgatggcatg gagttcacga tacacggcga catgaagaac aacaagccga
3661 agaaatccaa atatctaaat aacgcaacgg acgacgacac tgccagcatt aactcatatg
3721 gtagccataa gaatcgacca ttcaaggatg agagccacaa gggcagcgcc gagacgatgg
3781 agggcgagga gaagcgggac gccagcaagg aggatttagg tatcgatgag gagctcgacg
3841 aggagggcga attggaggag ggcccgctcg acggcgatat catcatacat gccaacgatg
3901 aggatatact cgatgaatat ccagctgatt gctgccccga ttcgtactat aagaaatttc
3961 cgatcttagc cggtgatgat gactcgccgt tctggcaagg atggggcaat ttacgactga
4021 aaacttttca attaattgaa aataaatatt ttgaaacagc tgttatcact atgattttaa
4081 tgagtagctt agctttggca ttagaagatg tacatctgcc acaaagaccc atactgcagg
4141 atattttata ctatatggac agaatattta cggttatatt cttcttggaa atgttaatca
4201 agtggctggc gctcggcttc aaagtgtact tcacgaacgc gtggtgctgg ctcgatttcg
4261 tcattgtcat ggtatcgctt atcaacttcg ttgcttcact tgttggagct ggtggtattc
4321 aagccttcaa gactatgcga acgttaagag cactgagacc actacgtgcc atgtcccgta
4381 tgcagggcat gagggtcgtc gttaatgcgc tggtacaagc tataccgtcc atcttcaatg
4441 tgctattggt gtgtctaata ttttggctaa tttttgccat aatgggtgta cagctttttg
4501 ctggaaaata ttttaagtgc gaggacatga atggcacgaa gctcagccac gagatcatac
4561 caaatcgcaa tgcctgcgaa agcgagaact acacgtgggt gaattcagca atgaatttcg
4621 atcatgtagg taacgcgtat ctgtgccttt tccaagtggc caccttcaaa ggctggatac
4681 aaatcatgaa cgatgctatc gattcacgag aggtggacaa gcagccaatt cgtgaaacga
4741 acatctacat gtatttatat ttcgtattct tcatcatatt tggatcattt ttcacactca
4801 atctgttcat tggtgttatc attgataatt ttaatgagca aaagaaaaaa gcaggtggat
4861 cattagaaat gttcatgaca gaagatcaga aaaagtacta taatgctatg aaaaagatgg
4921 gctctaaaaa accattaaaa gccattccaa gaccaaggtg gcgtccacaa gcaatagtct
4981 ttgaaatagt aaccgataag aaattcgata tagtcataat gttattcatt ggtctgaaca
5041 tgttcaccat gacactcgat cgttacgatg cgtcggacac gtacaacgcg gtccttgact
5101 atctcaatgc gatattcgta gttattttca gttccgaatg tctattaaaa atattcgctt
5161 tacgatatca ctattttatt gagccatgga atttatttga tgtagtagtt gtcattttat
5221 ccatcttagg tctcgtactt agcgatatta tcgagaaata cttcgtatcg ccgacactgc
5281 tccgagtggt gcgcgtggcc aaagtgggtc gcgtactgcg tctggtgaag ggcgccaagg
5341 gtatacgaac gctgctgttc gccctggcca tgtcgctgcc ggcgctgttc aacatctgcc
5401 tgctgctgtt cctggtcatg ttcatcttcg cgatattcgg catgtcgttc ttcatgcatg
5461 tgaaggagaa gagcggcatc aacgacgtct acaacttcaa gacgttcgga cagagcatga
5521 tcctgctctt tcagatgtct acctcagccg gttgggatgg tgtactcgac gccattatca
5581 atgaggaagc atgcgatcca cccgacaacg acaaaggcta tccgggcaat tgtggttcag
5641 cgaccgttgg aataacgttt ctcctctcat acctagttat aagctttttg atagttatta
5701 atatgtacat tgctgtcatt ctcgagaact atagtcaggc caccgaggat gtgcaggagg
5761 gtctcaccga cgacgattac gatatgtact atgagatctg gcaacagttc gatccggagg
5821 gcacccagta catacgatac gaccagctgt ccgagttcct cgacgtgctg gagcccccgc
5881 tccagattca caagcccaac aagtacaaaa tcatatcgat ggacataccc atctgtcgcg
5941 gtgacctcat gtactgtgtg gacatactgg acgcactgac caaagacttt ttcgcgcgca
6001 aaggcaatcc cattgaggag acgggcgaga ttggtgagat tgccgccagg ccggacaccg
6061 agggctacga gcccgtctcc tccaccctct ggcgacagcg ggaggagtac tgtgcccgcc
6121 tcattcaaca tgcctggcgc aagcataaaa cgcgcgccga gggcggtggt gcaccgtccg
6181 acgcggaagg cgacggcccc gaagatggtg atgcgggtgg cggtggcggg gcggcgctga
6241 tgctgggtgt tctggatgtt ccagatgctg ctggcgatgc agcaaccact ggctcccatg
6301 acggggcaac ggcactcgat cccgagaccg atccatcggg agtaccggcg gcagcggcgg
6361 tggccccaca gccagccggt gacggcggcg agggaccgga tggaggagca acagccgatc
6421 cgcacgagag caatgtaaat agtccgacga tggacggcgc gacggcgggc agcccgggcg
6481 cagggagcgc tggcagcact ggccgacaga cggccgttct cgtggagagc gatgggtttg
6541 tgaccaagaa cgggcacaag gttgtaatac actcgcgttc gccgagcata acgtcgcgca
6601 cggcggatgt ctgagccagg cctcgccccc ccctccaaga tgcacgcgag tattaggtgc
6661 aggtgcagat gcagtgcagt ggtggtgcca caacaacaac aacaacaaca gcaggtgcca
6721 ctggtagctg caattgcaac tgcaacagca gcaacaggaa gaa