PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361511 6784 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X28, mRNA.
ACCESSION XM_022361511
VERSION XM_022361511.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361511.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6784
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6784
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 46 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 5 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6635
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X28"
/protein_id="XP_022217203.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL
TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI
MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM
GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL
MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS
GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP
WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA
AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM
SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYT
IRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNL
GSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTT
CLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQA
AGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQE
WISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATM
KLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPT
LNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNF
TDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLS
NFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSG
KGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNN
KPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGID
EELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQG
WGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTV
IFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLR
ALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCE
DMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDA
IDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEM
FMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMF
TMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVIL
SILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFN
ICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVL
DAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQA
TEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKII
SMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTL
WRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVP
DAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNV
NSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV
"
misc_feature 657..1511
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1866..2423
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2652..3287
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3363..4052
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4062..4877
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4845..5003
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4890..4901
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5025..5777
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5808..5951
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc
421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct
481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac
541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa
601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc
661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc
721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat
781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg
841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt
901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca
961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg
1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct
1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca
1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag
1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg
1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt
1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc
1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca
1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg
1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag
1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc
1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga
1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg
1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg
1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga
1861 gcacgacatc cttatcctta cctggttcac cgtttaacat acgcagggga tcacgtagtt
1921 ctcacaagta cacgatccgg aatggacgtg gacgctttgg tatacccggc agcgatcgca
1981 agccgttggt attgtcaaca tatcaggatg ctcagcagca cttgccctat gccgatgatt
2041 cgaacgctgt tacgcccatg tccgaggaga acggtgccat tatagtgccc gtttattatg
2101 gaaatctagg ctccaggcat tcatcgtata cttcgcatca gtccagaata tcgtatacct
2161 cacatggcga tctattgggc ggcatggccg tcatgggcgt cagcacaatg accaaggaga
2221 gcaaattgcg aaatcgcaac tcacgcaatc aatcagtggg cgccaccaat ggcggcacca
2281 cctgcctgga ccccaatcac aaggtcgagc atcgcgactt cgaaatcggt ctggagtgca
2341 cggacgaagc tggcaagatt aaacatcatg acaatccttt tatcgagccc gtccagacac
2401 aaacggtagt cgacatgaaa gatgtgatgg tactgaatga cattatcgaa caggccgctg
2461 gtcggcacag tcgggctagt gatcgcggtg tctccgttta ctatttccca acagaggacg
2521 atgatgagga tgggccgaca ttaaaagaca aggccctcga agcgctaatg aaaggcatcg
2581 aagtgttttg tgtgtgggac tgttgctggg tttggttgaa attgcaggag tggatatcgc
2641 tgatcgtctt cgatcccttt gtcgagctct tcatcacgct gtgcattgtg gtcaacacga
2701 tgttcatggc catggaccat cacgacatga acaaggagat ggaacgcatc cttaagtgcg
2761 gaaattattt cttcacggca acattcgcca ttgaggcaac catgaaactg tgcgccatga
2821 gccccaaata ctatttccag gagggctgga acatctttga cttcatcatt gtggcactct
2881 cattgctgga gctgggcctc gagggcgttc agggcctctc cgtcttgcgt tcgtttcgtt
2941 tgctgcgtgt attcaaattg gccaagtcct ggccaacact taatttactc atttcgatta
3001 tgggacgcac catgggcgct ttgggtaatc tgacatttgt actttgcatt atcatcttca
3061 tctttgcggt gatgggaatg caactgttcg gaaagaatta tcatgataac aaggatcgct
3121 tcccggacgg tgacctgccc cgctggaact tcaccgactt catgcacagc ttcatgatcg
3181 tgtttcgggt gctatgcggc gagtggatcg agtccatgtg ggactgtatg cacgtgggcg
3241 atgtatcgtg cattccattc ttcttggcca ccgttgtcat cggcaattta gtggttctta
3301 accttttctt agccctgctt ttgtcaaatt ttggttcatc tagcttatca gcgccgacag
3361 ccgataacga taccaataaa atagccgagg ccttcaatcg aattgggcga tttaaaagtt
3421 gggttaagcg taatattgct gattgtttca agttaatacg taacaaattg acaaatcaaa
3481 taagtgatca accatcaggc aaaggcgttt gtcgttgtat atctgcagag cacggcgaca
3541 acgagctgga gctgggccac gacgagatac tcgccgacgg gctcatcaag aagggcatca
3601 aggaggcgac acagctggag gtggccatcg gtgatggcat ggagttcacg atacacggcg
3661 acatgaagaa caacaagccg aagaaatcca aatatctaaa taacgcaacg gacgacgaca
3721 ctgccagcat taactcatat ggtagccata agaatcgacc attcaaggat gagagccaca
3781 agggcagcgc cgagacgatg gagggcgagg agaagcggga cgccagcaag gaggatttag
3841 gtatcgatga ggagctcgac gaggagggcg aattggagga gggcccgctc gacggcgata
3901 tcatcataca tgccaacgat gaggatatac tcgatgaata tccagctgat tgctgccccg
3961 attcgtacta taagaaattt ccgatcttag ccggtgatga tgactcgccg ttctggcaag
4021 gatggggcaa tttacgactg aaaacttttc aattaattga aaataaatat tttgaaacag
4081 ctgttatcac tatgatttta atgagtagct tagctttggc attagaagat gtacatctgc
4141 cacaaagacc catactgcag gatattttat actatatgga cagaatattt acggttatat
4201 tcttcttgga aatgttaatc aagtggctgg cgctcggctt caaagtgtac ttcacgaacg
4261 cgtggtgctg gctcgatttc gtcattgtca tggtatcgct tatcaacttc gttgcttcac
4321 ttgttggagc tggtggtatt caagccttca agactatgcg aacgttaaga gcactgagac
4381 cactacgtgc catgtcccgt atgcagggca tgagggtcgt cgttaatgcg ctggtacaag
4441 ctataccgtc catcttcaat gtgctattgg tgtgtctaat attttggcta atttttgcca
4501 taatgggtgt acagcttttt gctggaaaat attttaagtg cgaggacatg aatggcacga
4561 agctcagcca cgagatcata ccaaatcgca atgcctgcga aagcgagaac tacacgtggg
4621 tgaattcagc aatgaatttc gatcatgtag gtaacgcgta tctgtgcctt ttccaagtgg
4681 ccaccttcaa aggctggata caaatcatga acgatgctat cgattcacga gaggtggaca
4741 agcagccaat tcgtgaaacg aacatctaca tgtatttata tttcgtattc ttcatcatat
4801 ttggatcatt tttcacactc aatctgttca ttggtgttat cattgataat tttaatgagc
4861 aaaagaaaaa agcaggtgga tcattagaaa tgttcatgac agaagatcag aaaaagtact
4921 ataatgctat gaaaaagatg ggctctaaaa aaccattaaa agccattcca agaccaaggt
4981 ggcgtccaca agcaatagtc tttgaaatag taaccgataa gaaattcgat atagtcataa
5041 tgttattcat tggtctgaac atgttcacca tgacactcga tcgttacgat gcgtcggaca
5101 cgtacaacgc ggtccttgac tatctcaatg cgatattcgt agttattttc agttccgaat
5161 gtctattaaa aatattcgct ttacgatatc actattttat tgagccatgg aatttatttg
5221 atgtagtagt tgtcatttta tccatcttag gtctcgtact tagcgatatt atcgagaaat
5281 acttcgtatc gccgacactg ctccgagtgg tgcgcgtggc caaagtgggt cgcgtactgc
5341 gtctggtgaa gggcgccaag ggtatacgaa cgctgctgtt cgccctggcc atgtcgctgc
5401 cggcgctgtt caacatctgc ctgctgctgt tcctggtcat gttcatcttc gcgatattcg
5461 gcatgtcgtt cttcatgcat gtgaaggaga agagcggcat caacgacgtc tacaacttca
5521 agacgttcgg acagagcatg atcctgctct ttcagatgtc tacctcagcc ggttgggatg
5581 gtgtactcga cgccattatc aatgaggaag catgcgatcc acccgacaac gacaaaggct
5641 atccgggcaa ttgtggttca gcgaccgttg gaataacgtt tctcctctca tacctagtta
5701 taagcttttt gatagttatt aatatgtaca ttgctgtcat tctcgagaac tatagtcagg
5761 ccaccgagga tgtgcaggag ggtctcaccg acgacgatta cgatatgtac tatgagatct
5821 ggcaacagtt cgatccggag ggcacccagt acatacgata cgaccagctg tccgagttcc
5881 tcgacgtgct ggagcccccg ctccagattc acaagcccaa caagtacaaa atcatatcga
5941 tggacatacc catctgtcgc ggtgacctca tgtactgtgt ggacatactg gacgcactga
6001 ccaaagactt tttcgcgcgc aaaggcaatc ccattgagga gacgggcgag attggtgaga
6061 ttgccgccag gccggacacc gagggctacg agcccgtctc ctccaccctc tggcgacagc
6121 gggaggagta ctgtgcccgc ctcattcaac atgcctggcg caagcataaa acgcgcgccg
6181 agggcggtgg tgcaccgtcc gacgcggaag gcgacggccc cgaagatggt gatgcgggtg
6241 gcggtggcgg ggcggcgctg atgctgggtg ttctggatgt tccagatgct gctggcgatg
6301 cagcaaccac tggctcccat gacggggcaa cggcactcga tcccgagacc gatccatcgg
6361 gagtaccggc ggcagcggcg gtggccccac agccagccgg tgacggcggc gagggaccgg
6421 atggaggagc aacagccgat ccgcacgaga gcaatgtaaa tagtccgacg atggacggcg
6481 cgacggcggg cagcccgggc gcagggagcg ctggcagcac tggccgacag acggccgttc
6541 tcgtggagag cgatgggttt gtgaccaaga acgggcacaa ggttgtaata cactcgcgtt
6601 cgccgagcat aacgtcgcgc acggcggatg tctgagccag gcctcgcccc cccctccaag
6661 atgcacgcga gtattaggtg caggtgcaga tgcagtgcag tggtggtgcc acaacaacaa
6721 caacaacaac agcaggtgcc actggtagct gcaattgcaa ctgcaacagc agcaacagga
6781 agaa