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LOCUS XM_022361511 6784 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X28, mRNA. ACCESSION XM_022361511 VERSION XM_022361511.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361511.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6784 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6784 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6635 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X28" /protein_id="XP_022217203.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYT IRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNL GSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTT CLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQA AGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQE WISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATM KLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPT LNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNF TDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLS NFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSG KGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNN KPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGID EELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQG WGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTV IFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLR ALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCE DMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDA IDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEM FMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMF TMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVIL SILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFN ICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVL DAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQA TEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKII SMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTL WRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVP DAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNV NSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV " misc_feature 657..1511 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1866..2423 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2652..3287 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3363..4052 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4062..4877 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4845..5003 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4890..4901 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5025..5777 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5808..5951 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc 421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct 481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac 541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa 601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc 661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc 721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat 781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg 841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt 901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca 961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg 1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct 1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca 1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag 1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg 1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt 1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc 1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca 1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg 1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag 1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc 1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga 1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg 1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg 1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga 1861 gcacgacatc cttatcctta cctggttcac cgtttaacat acgcagggga tcacgtagtt 1921 ctcacaagta cacgatccgg aatggacgtg gacgctttgg tatacccggc agcgatcgca 1981 agccgttggt attgtcaaca tatcaggatg ctcagcagca cttgccctat gccgatgatt 2041 cgaacgctgt tacgcccatg tccgaggaga acggtgccat tatagtgccc gtttattatg 2101 gaaatctagg ctccaggcat tcatcgtata cttcgcatca gtccagaata tcgtatacct 2161 cacatggcga tctattgggc ggcatggccg tcatgggcgt cagcacaatg accaaggaga 2221 gcaaattgcg aaatcgcaac tcacgcaatc aatcagtggg cgccaccaat ggcggcacca 2281 cctgcctgga ccccaatcac aaggtcgagc atcgcgactt cgaaatcggt ctggagtgca 2341 cggacgaagc tggcaagatt aaacatcatg acaatccttt tatcgagccc gtccagacac 2401 aaacggtagt cgacatgaaa gatgtgatgg tactgaatga cattatcgaa caggccgctg 2461 gtcggcacag tcgggctagt gatcgcggtg tctccgttta ctatttccca acagaggacg 2521 atgatgagga tgggccgaca ttaaaagaca aggccctcga agcgctaatg aaaggcatcg 2581 aagtgttttg tgtgtgggac tgttgctggg tttggttgaa attgcaggag tggatatcgc 2641 tgatcgtctt cgatcccttt gtcgagctct tcatcacgct gtgcattgtg gtcaacacga 2701 tgttcatggc catggaccat cacgacatga acaaggagat ggaacgcatc cttaagtgcg 2761 gaaattattt cttcacggca acattcgcca ttgaggcaac catgaaactg tgcgccatga 2821 gccccaaata ctatttccag gagggctgga acatctttga cttcatcatt gtggcactct 2881 cattgctgga gctgggcctc gagggcgttc agggcctctc cgtcttgcgt tcgtttcgtt 2941 tgctgcgtgt attcaaattg gccaagtcct ggccaacact taatttactc atttcgatta 3001 tgggacgcac catgggcgct ttgggtaatc tgacatttgt actttgcatt atcatcttca 3061 tctttgcggt gatgggaatg caactgttcg gaaagaatta tcatgataac aaggatcgct 3121 tcccggacgg tgacctgccc cgctggaact tcaccgactt catgcacagc ttcatgatcg 3181 tgtttcgggt gctatgcggc gagtggatcg agtccatgtg ggactgtatg cacgtgggcg 3241 atgtatcgtg cattccattc ttcttggcca ccgttgtcat cggcaattta gtggttctta 3301 accttttctt agccctgctt ttgtcaaatt ttggttcatc tagcttatca gcgccgacag 3361 ccgataacga taccaataaa atagccgagg ccttcaatcg aattgggcga tttaaaagtt 3421 gggttaagcg taatattgct gattgtttca agttaatacg taacaaattg acaaatcaaa 3481 taagtgatca accatcaggc aaaggcgttt gtcgttgtat atctgcagag cacggcgaca 3541 acgagctgga gctgggccac gacgagatac tcgccgacgg gctcatcaag aagggcatca 3601 aggaggcgac acagctggag gtggccatcg gtgatggcat ggagttcacg atacacggcg 3661 acatgaagaa caacaagccg aagaaatcca aatatctaaa taacgcaacg gacgacgaca 3721 ctgccagcat taactcatat ggtagccata agaatcgacc attcaaggat gagagccaca 3781 agggcagcgc cgagacgatg gagggcgagg agaagcggga cgccagcaag gaggatttag 3841 gtatcgatga ggagctcgac gaggagggcg aattggagga gggcccgctc gacggcgata 3901 tcatcataca tgccaacgat gaggatatac tcgatgaata tccagctgat tgctgccccg 3961 attcgtacta taagaaattt ccgatcttag ccggtgatga tgactcgccg ttctggcaag 4021 gatggggcaa tttacgactg aaaacttttc aattaattga aaataaatat tttgaaacag 4081 ctgttatcac tatgatttta atgagtagct tagctttggc attagaagat gtacatctgc 4141 cacaaagacc catactgcag gatattttat actatatgga cagaatattt acggttatat 4201 tcttcttgga aatgttaatc aagtggctgg cgctcggctt caaagtgtac ttcacgaacg 4261 cgtggtgctg gctcgatttc gtcattgtca tggtatcgct tatcaacttc gttgcttcac 4321 ttgttggagc tggtggtatt caagccttca agactatgcg aacgttaaga gcactgagac 4381 cactacgtgc catgtcccgt atgcagggca tgagggtcgt cgttaatgcg ctggtacaag 4441 ctataccgtc catcttcaat gtgctattgg tgtgtctaat attttggcta atttttgcca 4501 taatgggtgt acagcttttt gctggaaaat attttaagtg cgaggacatg aatggcacga 4561 agctcagcca cgagatcata ccaaatcgca atgcctgcga aagcgagaac tacacgtggg 4621 tgaattcagc aatgaatttc gatcatgtag gtaacgcgta tctgtgcctt ttccaagtgg 4681 ccaccttcaa aggctggata caaatcatga acgatgctat cgattcacga gaggtggaca 4741 agcagccaat tcgtgaaacg aacatctaca tgtatttata tttcgtattc ttcatcatat 4801 ttggatcatt tttcacactc aatctgttca ttggtgttat cattgataat tttaatgagc 4861 aaaagaaaaa agcaggtgga tcattagaaa tgttcatgac agaagatcag aaaaagtact 4921 ataatgctat gaaaaagatg ggctctaaaa aaccattaaa agccattcca agaccaaggt 4981 ggcgtccaca agcaatagtc tttgaaatag taaccgataa gaaattcgat atagtcataa 5041 tgttattcat tggtctgaac atgttcacca tgacactcga tcgttacgat gcgtcggaca 5101 cgtacaacgc ggtccttgac tatctcaatg cgatattcgt agttattttc agttccgaat 5161 gtctattaaa aatattcgct ttacgatatc actattttat tgagccatgg aatttatttg 5221 atgtagtagt tgtcatttta tccatcttag gtctcgtact tagcgatatt atcgagaaat 5281 acttcgtatc gccgacactg ctccgagtgg tgcgcgtggc caaagtgggt cgcgtactgc 5341 gtctggtgaa gggcgccaag ggtatacgaa cgctgctgtt cgccctggcc atgtcgctgc 5401 cggcgctgtt caacatctgc ctgctgctgt tcctggtcat gttcatcttc gcgatattcg 5461 gcatgtcgtt cttcatgcat gtgaaggaga agagcggcat caacgacgtc tacaacttca 5521 agacgttcgg acagagcatg atcctgctct ttcagatgtc tacctcagcc ggttgggatg 5581 gtgtactcga cgccattatc aatgaggaag catgcgatcc acccgacaac gacaaaggct 5641 atccgggcaa ttgtggttca gcgaccgttg gaataacgtt tctcctctca tacctagtta 5701 taagcttttt gatagttatt aatatgtaca ttgctgtcat tctcgagaac tatagtcagg 5761 ccaccgagga tgtgcaggag ggtctcaccg acgacgatta cgatatgtac tatgagatct 5821 ggcaacagtt cgatccggag ggcacccagt acatacgata cgaccagctg tccgagttcc 5881 tcgacgtgct ggagcccccg ctccagattc acaagcccaa caagtacaaa atcatatcga 5941 tggacatacc catctgtcgc ggtgacctca tgtactgtgt ggacatactg gacgcactga 6001 ccaaagactt tttcgcgcgc aaaggcaatc ccattgagga gacgggcgag attggtgaga 6061 ttgccgccag gccggacacc gagggctacg agcccgtctc ctccaccctc tggcgacagc 6121 gggaggagta ctgtgcccgc ctcattcaac atgcctggcg caagcataaa acgcgcgccg 6181 agggcggtgg tgcaccgtcc gacgcggaag gcgacggccc cgaagatggt gatgcgggtg 6241 gcggtggcgg ggcggcgctg atgctgggtg ttctggatgt tccagatgct gctggcgatg 6301 cagcaaccac tggctcccat gacggggcaa cggcactcga tcccgagacc gatccatcgg 6361 gagtaccggc ggcagcggcg gtggccccac agccagccgg tgacggcggc gagggaccgg 6421 atggaggagc aacagccgat ccgcacgaga gcaatgtaaa tagtccgacg atggacggcg 6481 cgacggcggg cagcccgggc gcagggagcg ctggcagcac tggccgacag acggccgttc 6541 tcgtggagag cgatgggttt gtgaccaaga acgggcacaa ggttgtaata cactcgcgtt 6601 cgccgagcat aacgtcgcgc acggcggatg tctgagccag gcctcgcccc cccctccaag 6661 atgcacgcga gtattaggtg caggtgcaga tgcagtgcag tggtggtgcc acaacaacaa 6721 caacaacaac agcaggtgcc actggtagct gcaattgcaa ctgcaacagc agcaacagga 6781 agaa