PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361508 6787 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X27, mRNA.
ACCESSION XM_022361508
VERSION XM_022361508.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361508.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6787
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6787
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 48 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 8 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6638
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X27"
/protein_id="XP_022217200.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI
RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN
QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD
VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVW
DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYF
FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL
RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDR
FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLV
VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK
LTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKN
NKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGI
DEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQ
GWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFT
VIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTL
RALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKC
EDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMND
AIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLE
MFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNM
FTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVI
LSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALF
NICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGV
LDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQ
ATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKI
ISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSST
LWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDV
PDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESN
VNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTAD
V"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1899..2456
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2685..3320
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3396..4055
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4065..4880
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4848..5006
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4893..4904
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5028..5780
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5811..5954
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca
1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt
1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac
1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg
2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg
2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt
2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg
2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca
2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg
2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc
2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga
2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg
2521 gtgtctccgt ttactatttc ccaacagagg acgatgatga ggatgggccg acattaaaag
2581 acaaggccct cgaagcgcta atgaaaggca tcgaagtgtt ttgtgtgtgg gactgttgct
2641 gggtttggtt gaaattgcag gagtggatat cgctgatcgt cttcgatccc tttgtcgagc
2701 tcttcatcac gctgtgcatt gtggtcaaca cgatgttcat ggccatggac catcacgaca
2761 tgaacaagga gatggaacgc atccttaagt gcggaaatta tttcttcacg gcaacattcg
2821 ccattgaggc aaccatgaaa ctgtgcgcca tgagccccaa atactatttc caggagggct
2881 ggaacatctt tgacttcatc attgtggcac tctcattgct ggagctgggc ctcgagggcg
2941 ttcagggcct ctccgtcttg cgttcgtttc gtttgctgcg tgtattcaaa ttggccaagt
3001 cctggccaac acttaattta ctcatttcga ttatgggacg caccatgggc gctttgggta
3061 atctgacatt tgtactttgc attatcatct tcatctttgc ggtgatggga atgcaactgt
3121 tcggaaagaa ttatcatgat aacaaggatc gcttcccgga cggtgacctg ccccgctgga
3181 acttcaccga cttcatgcac agcttcatga tcgtgtttcg ggtgctatgc ggcgagtgga
3241 tcgagtccat gtgggactgt atgcacgtgg gcgatgtatc gtgcattcca ttcttcttgg
3301 ccaccgttgt catcggcaat ttagtggttc ttaacctttt cttagccctg cttttgtcaa
3361 attttggttc atctagctta tcagcgccga cagccgataa cgataccaat aaaatagccg
3421 aggccttcaa tcgaattggg cgatttaaaa gttgggttaa gcgtaatatt gctgattgtt
3481 tcaagttaat acgtaacaaa ttgacaaatc aaataagtga tcaaccatca gagcacggcg
3541 acaacgagct ggagctgggc cacgacgaga tactcgccga cgggctcatc aagaagggca
3601 tcaaggaggc gacacagctg gaggtggcca tcggtgatgg catggagttc acgatacacg
3661 gcgacatgaa gaacaacaag ccgaagaaat ccaaatatct aaataacgca acggacgacg
3721 acactgccag cattaactca tatggtagcc ataagaatcg accattcaag gatgagagcc
3781 acaagggcag cgccgagacg atggagggcg aggagaagcg ggacgccagc aaggaggatt
3841 taggtatcga tgaggagctc gacgaggagg gcgaattgga ggagggcccg ctcgacggcg
3901 atatcatcat acatgccaac gatgaggata tactcgatga atatccagct gattgctgcc
3961 ccgattcgta ctataagaaa tttccgatct tagccggtga tgatgactcg ccgttctggc
4021 aaggatgggg caatttacga ctgaaaactt ttcaattaat tgaaaataaa tattttgaaa
4081 cagctgttat cactatgatt ttaatgagta gcttagcttt ggcattagaa gatgtacatc
4141 tgccacaaag acccatactg caggatattt tatactatat ggacagaata tttacggtta
4201 tattcttctt ggaaatgtta atcaagtggc tggcgctcgg cttcaaagtg tacttcacga
4261 acgcgtggtg ctggctcgat ttcgtcattg tcatggtatc gcttatcaac ttcgttgctt
4321 cacttgttgg agctggtggt attcaagcct tcaagactat gcgaacgtta agagcactga
4381 gaccactacg tgccatgtcc cgtatgcagg gcatgagggt cgtcgttaat gcgctggtac
4441 aagctatacc gtccatcttc aatgtgctat tggtgtgtct aatattttgg ctaatttttg
4501 ccataatggg tgtacagctt tttgctggaa aatattttaa gtgcgaggac atgaatggca
4561 cgaagctcag ccacgagatc ataccaaatc gcaatgcctg cgaaagcgag aactacacgt
4621 gggtgaattc agcaatgaat ttcgatcatg taggtaacgc gtatctgtgc cttttccaag
4681 tggccacctt caaaggctgg atacaaatca tgaacgatgc tatcgattca cgagaggtgg
4741 acaagcagcc aattcgtgaa acgaacatct acatgtattt atatttcgta ttcttcatca
4801 tatttggatc atttttcaca ctcaatctgt tcattggtgt tatcattgat aattttaatg
4861 agcaaaagaa aaaagcaggt ggatcattag aaatgttcat gacagaagat cagaaaaagt
4921 actataatgc tatgaaaaag atgggctcta aaaaaccatt aaaagccatt ccaagaccaa
4981 ggtggcgtcc acaagcaata gtctttgaaa tagtaaccga taagaaattc gatatagtca
5041 taatgttatt cattggtctg aacatgttca ccatgacact cgatcgttac gatgcgtcgg
5101 acacgtacaa cgcggtcctt gactatctca atgcgatatt cgtagttatt ttcagttccg
5161 aatgtctatt aaaaatattc gctttacgat atcactattt tattgagcca tggaatttat
5221 ttgatgtagt agttgtcatt ttatccatct taggtctcgt acttagcgat attatcgaga
5281 aatacttcgt atcgccgaca ctgctccgag tggtgcgcgt ggccaaagtg ggtcgcgtac
5341 tgcgtctggt gaagggcgcc aagggtatac gaacgctgct gttcgccctg gccatgtcgc
5401 tgccggcgct gttcaacatc tgcctgctgc tgttcctggt catgttcatc ttcgcgatat
5461 tcggcatgtc gttcttcatg catgtgaagg agaagagcgg catcaacgac gtctacaact
5521 tcaagacgtt cggacagagc atgatcctgc tctttcagat gtctacctca gccggttggg
5581 atggtgtact cgacgccatt atcaatgagg aagcatgcga tccacccgac aacgacaaag
5641 gctatccggg caattgtggt tcagcgaccg ttggaataac gtttctcctc tcatacctag
5701 ttataagctt tttgatagtt attaatatgt acattgctgt cattctcgag aactatagtc
5761 aggccaccga ggatgtgcag gagggtctca ccgacgacga ttacgatatg tactatgaga
5821 tctggcaaca gttcgatccg gagggcaccc agtacatacg atacgaccag ctgtccgagt
5881 tcctcgacgt gctggagccc ccgctccaga ttcacaagcc caacaagtac aaaatcatat
5941 cgatggacat acccatctgt cgcggtgacc tcatgtactg tgtggacata ctggacgcac
6001 tgaccaaaga ctttttcgcg cgcaaaggca atcccattga ggagacgggc gagattggtg
6061 agattgccgc caggccggac accgagggct acgagcccgt ctcctccacc ctctggcgac
6121 agcgggagga gtactgtgcc cgcctcattc aacatgcctg gcgcaagcat aaaacgcgcg
6181 ccgagggcgg tggtgcaccg tccgacgcgg aaggcgacgg ccccgaagat ggtgatgcgg
6241 gtggcggtgg cggggcggcg ctgatgctgg gtgttctgga tgttccagat gctgctggcg
6301 atgcagcaac cactggctcc catgacgggg caacggcact cgatcccgag accgatccat
6361 cgggagtacc ggcggcagcg gcggtggccc cacagccagc cggtgacggc ggcgagggac
6421 cggatggagg agcaacagcc gatccgcacg agagcaatgt aaatagtccg acgatggacg
6481 gcgcgacggc gggcagcccg ggcgcaggga gcgctggcag cactggccga cagacggccg
6541 ttctcgtgga gagcgatggg tttgtgacca agaacgggca caaggttgta atacactcgc
6601 gttcgccgag cataacgtcg cgcacggcgg atgtctgagc caggcctcgc ccccccctcc
6661 aagatgcacg cgagtattag gtgcaggtgc agatgcagtg cagtggtggt gccacaacaa
6721 caacaacaac aacagcaggt gccactggta gctgcaattg caactgcaac agcagcaaca
6781 ggaagaa