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LOCUS XM_022361508 6787 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X27, mRNA. ACCESSION XM_022361508 VERSION XM_022361508.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361508.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6787 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6787 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6638 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X27" /protein_id="XP_022217200.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVW DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYF FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDR FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLV VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK LTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKN NKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGI DEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQ GWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFT VIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTL RALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKC EDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMND AIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLE MFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNM FTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVI LSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALF NICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGV LDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQ ATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKI ISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSST LWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDV PDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESN VNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTAD V" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2685..3320 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3396..4055 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4065..4880 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4848..5006 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4893..4904 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5028..5780 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5811..5954 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgtctccgt ttactatttc ccaacagagg acgatgatga ggatgggccg acattaaaag 2581 acaaggccct cgaagcgcta atgaaaggca tcgaagtgtt ttgtgtgtgg gactgttgct 2641 gggtttggtt gaaattgcag gagtggatat cgctgatcgt cttcgatccc tttgtcgagc 2701 tcttcatcac gctgtgcatt gtggtcaaca cgatgttcat ggccatggac catcacgaca 2761 tgaacaagga gatggaacgc atccttaagt gcggaaatta tttcttcacg gcaacattcg 2821 ccattgaggc aaccatgaaa ctgtgcgcca tgagccccaa atactatttc caggagggct 2881 ggaacatctt tgacttcatc attgtggcac tctcattgct ggagctgggc ctcgagggcg 2941 ttcagggcct ctccgtcttg cgttcgtttc gtttgctgcg tgtattcaaa ttggccaagt 3001 cctggccaac acttaattta ctcatttcga ttatgggacg caccatgggc gctttgggta 3061 atctgacatt tgtactttgc attatcatct tcatctttgc ggtgatggga atgcaactgt 3121 tcggaaagaa ttatcatgat aacaaggatc gcttcccgga cggtgacctg ccccgctgga 3181 acttcaccga cttcatgcac agcttcatga tcgtgtttcg ggtgctatgc ggcgagtgga 3241 tcgagtccat gtgggactgt atgcacgtgg gcgatgtatc gtgcattcca ttcttcttgg 3301 ccaccgttgt catcggcaat ttagtggttc ttaacctttt cttagccctg cttttgtcaa 3361 attttggttc atctagctta tcagcgccga cagccgataa cgataccaat aaaatagccg 3421 aggccttcaa tcgaattggg cgatttaaaa gttgggttaa gcgtaatatt gctgattgtt 3481 tcaagttaat acgtaacaaa ttgacaaatc aaataagtga tcaaccatca gagcacggcg 3541 acaacgagct ggagctgggc cacgacgaga tactcgccga cgggctcatc aagaagggca 3601 tcaaggaggc gacacagctg gaggtggcca tcggtgatgg catggagttc acgatacacg 3661 gcgacatgaa gaacaacaag ccgaagaaat ccaaatatct aaataacgca acggacgacg 3721 acactgccag cattaactca tatggtagcc ataagaatcg accattcaag gatgagagcc 3781 acaagggcag cgccgagacg atggagggcg aggagaagcg ggacgccagc aaggaggatt 3841 taggtatcga tgaggagctc gacgaggagg gcgaattgga ggagggcccg ctcgacggcg 3901 atatcatcat acatgccaac gatgaggata tactcgatga atatccagct gattgctgcc 3961 ccgattcgta ctataagaaa tttccgatct tagccggtga tgatgactcg ccgttctggc 4021 aaggatgggg caatttacga ctgaaaactt ttcaattaat tgaaaataaa tattttgaaa 4081 cagctgttat cactatgatt ttaatgagta gcttagcttt ggcattagaa gatgtacatc 4141 tgccacaaag acccatactg caggatattt tatactatat ggacagaata tttacggtta 4201 tattcttctt ggaaatgtta atcaagtggc tggcgctcgg cttcaaagtg tacttcacga 4261 acgcgtggtg ctggctcgat ttcgtcattg tcatggtatc gcttatcaac ttcgttgctt 4321 cacttgttgg agctggtggt attcaagcct tcaagactat gcgaacgtta agagcactga 4381 gaccactacg tgccatgtcc cgtatgcagg gcatgagggt cgtcgttaat gcgctggtac 4441 aagctatacc gtccatcttc aatgtgctat tggtgtgtct aatattttgg ctaatttttg 4501 ccataatggg tgtacagctt tttgctggaa aatattttaa gtgcgaggac atgaatggca 4561 cgaagctcag ccacgagatc ataccaaatc gcaatgcctg cgaaagcgag aactacacgt 4621 gggtgaattc agcaatgaat ttcgatcatg taggtaacgc gtatctgtgc cttttccaag 4681 tggccacctt caaaggctgg atacaaatca tgaacgatgc tatcgattca cgagaggtgg 4741 acaagcagcc aattcgtgaa acgaacatct acatgtattt atatttcgta ttcttcatca 4801 tatttggatc atttttcaca ctcaatctgt tcattggtgt tatcattgat aattttaatg 4861 agcaaaagaa aaaagcaggt ggatcattag aaatgttcat gacagaagat cagaaaaagt 4921 actataatgc tatgaaaaag atgggctcta aaaaaccatt aaaagccatt ccaagaccaa 4981 ggtggcgtcc acaagcaata gtctttgaaa tagtaaccga taagaaattc gatatagtca 5041 taatgttatt cattggtctg aacatgttca ccatgacact cgatcgttac gatgcgtcgg 5101 acacgtacaa cgcggtcctt gactatctca atgcgatatt cgtagttatt ttcagttccg 5161 aatgtctatt aaaaatattc gctttacgat atcactattt tattgagcca tggaatttat 5221 ttgatgtagt agttgtcatt ttatccatct taggtctcgt acttagcgat attatcgaga 5281 aatacttcgt atcgccgaca ctgctccgag tggtgcgcgt ggccaaagtg ggtcgcgtac 5341 tgcgtctggt gaagggcgcc aagggtatac gaacgctgct gttcgccctg gccatgtcgc 5401 tgccggcgct gttcaacatc tgcctgctgc tgttcctggt catgttcatc ttcgcgatat 5461 tcggcatgtc gttcttcatg catgtgaagg agaagagcgg catcaacgac gtctacaact 5521 tcaagacgtt cggacagagc atgatcctgc tctttcagat gtctacctca gccggttggg 5581 atggtgtact cgacgccatt atcaatgagg aagcatgcga tccacccgac aacgacaaag 5641 gctatccggg caattgtggt tcagcgaccg ttggaataac gtttctcctc tcatacctag 5701 ttataagctt tttgatagtt attaatatgt acattgctgt cattctcgag aactatagtc 5761 aggccaccga ggatgtgcag gagggtctca ccgacgacga ttacgatatg tactatgaga 5821 tctggcaaca gttcgatccg gagggcaccc agtacatacg atacgaccag ctgtccgagt 5881 tcctcgacgt gctggagccc ccgctccaga ttcacaagcc caacaagtac aaaatcatat 5941 cgatggacat acccatctgt cgcggtgacc tcatgtactg tgtggacata ctggacgcac 6001 tgaccaaaga ctttttcgcg cgcaaaggca atcccattga ggagacgggc gagattggtg 6061 agattgccgc caggccggac accgagggct acgagcccgt ctcctccacc ctctggcgac 6121 agcgggagga gtactgtgcc cgcctcattc aacatgcctg gcgcaagcat aaaacgcgcg 6181 ccgagggcgg tggtgcaccg tccgacgcgg aaggcgacgg ccccgaagat ggtgatgcgg 6241 gtggcggtgg cggggcggcg ctgatgctgg gtgttctgga tgttccagat gctgctggcg 6301 atgcagcaac cactggctcc catgacgggg caacggcact cgatcccgag accgatccat 6361 cgggagtacc ggcggcagcg gcggtggccc cacagccagc cggtgacggc ggcgagggac 6421 cggatggagg agcaacagcc gatccgcacg agagcaatgt aaatagtccg acgatggacg 6481 gcgcgacggc gggcagcccg ggcgcaggga gcgctggcag cactggccga cagacggccg 6541 ttctcgtgga gagcgatggg tttgtgacca agaacgggca caaggttgta atacactcgc 6601 gttcgccgag cataacgtcg cgcacggcgg atgtctgagc caggcctcgc ccccccctcc 6661 aagatgcacg cgagtattag gtgcaggtgc agatgcagtg cagtggtggt gccacaacaa 6721 caacaacaac aacagcaggt gccactggta gctgcaattg caactgcaac agcagcaaca 6781 ggaagaa