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LOCUS XM_022361507 6793 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X26, mRNA. ACCESSION XM_022361507 VERSION XM_022361507.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361507.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6793 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6793 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6644 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X26" /protein_id="XP_022217199.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLK LQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIE ATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKS WPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPR WNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLAL LLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQ PSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDM KNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDL GIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPF WQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRI FTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR TLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYF KCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIM NDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGS LEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGL NMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVV VILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPA LFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENY SQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKY KIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVS STLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVL DVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHE SNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRT ADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2661..3296 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3372..4061 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4071..4886 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4854..5012 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4899..4910 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5034..5786 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5817..5960 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgaggacga tgatgaggat gggccgacat taaaagacaa ggccctcgaa gcgctaatga 2581 aaggcatcga agtgttttgt gtgtgggact gttgctgggt ttggttgaaa ttgcaggagt 2641 ggatatcgct gatcgtcttc gatccctttg tcgagctctt catcacgctg tgcattgtgg 2701 tcaacacgat gttcatggcc atggaccatc acgacatgaa caaggagatg gaacgcatcc 2761 ttaagtgcgg aaattatttc ttcacggcaa cattcgccat tgaggcaacc atgaaactgt 2821 gcgccatgag ccccaaatac tatttccagg agggctggaa catctttgac ttcatcattg 2881 tggcactctc attgctggag ctgggcctcg agggcgttca gggcctctcc gtcttgcgtt 2941 cgtttcgttt gctgcgtgta ttcaaattgg ccaagtcctg gccaacactt aatttactca 3001 tttcgattat gggacgcacc atgggcgctt tgggtaatct gacatttgta ctttgcatta 3061 tcatcttcat ctttgcggtg atgggaatgc aactgttcgg aaagaattat catgataaca 3121 aggatcgctt cccggacggt gacctgcccc gctggaactt caccgacttc atgcacagct 3181 tcatgatcgt gtttcgggtg ctatgcggcg agtggatcga gtccatgtgg gactgtatgc 3241 acgtgggcga tgtatcgtgc attccattct tcttggccac cgttgtcatc ggcaatttag 3301 tggttcttaa ccttttctta gccctgcttt tgtcaaattt tggttcatct agcttatcag 3361 cgccgacagc cgataacgat accaataaaa tagccgaggc cttcaatcga attgggcgat 3421 ttaaaagttg ggttaagcgt aatattgctg attgtttcaa gttaatacgt aacaaattga 3481 caaatcaaat aagtgatcaa ccatcaggca aaggcgtttg tcgttgtata tctgcagagc 3541 acggcgacaa cgagctggag ctgggccacg acgagatact cgccgacggg ctcatcaaga 3601 agggcatcaa ggaggcgaca cagctggagg tggccatcgg tgatggcatg gagttcacga 3661 tacacggcga catgaagaac aacaagccga agaaatccaa atatctaaat aacgcaacgg 3721 acgacgacac tgccagcatt aactcatatg gtagccataa gaatcgacca ttcaaggatg 3781 agagccacaa gggcagcgcc gagacgatgg agggcgagga gaagcgggac gccagcaagg 3841 aggatttagg tatcgatgag gagctcgacg aggagggcga attggaggag ggcccgctcg 3901 acggcgatat catcatacat gccaacgatg aggatatact cgatgaatat ccagctgatt 3961 gctgccccga ttcgtactat aagaaatttc cgatcttagc cggtgatgat gactcgccgt 4021 tctggcaagg atggggcaat ttacgactga aaacttttca attaattgaa aataaatatt 4081 ttgaaacagc tgttatcact atgattttaa tgagtagctt agctttggca ttagaagatg 4141 tacatctgcc acaaagaccc atactgcagg atattttata ctatatggac agaatattta 4201 cggttatatt cttcttggaa atgttaatca agtggctggc gctcggcttc aaagtgtact 4261 tcacgaacgc gtggtgctgg ctcgatttcg tcattgtcat ggtatcgctt atcaacttcg 4321 ttgcttcact tgttggagct ggtggtattc aagccttcaa gactatgcga acgttaagag 4381 cactgagacc actacgtgcc atgtcccgta tgcagggcat gagggtcgtc gttaatgcgc 4441 tggtacaagc tataccgtcc atcttcaatg tgctattggt gtgtctaata ttttggctaa 4501 tttttgccat aatgggtgta cagctttttg ctggaaaata ttttaagtgc gaggacatga 4561 atggcacgaa gctcagccac gagatcatac caaatcgcaa tgcctgcgaa agcgagaact 4621 acacgtgggt gaattcagca atgaatttcg atcatgtagg taacgcgtat ctgtgccttt 4681 tccaagtggc caccttcaaa ggctggatac aaatcatgaa cgatgctatc gattcacgag 4741 aggtggacaa gcagccaatt cgtgaaacga acatctacat gtatttatat ttcgtattct 4801 tcatcatatt tggatcattt ttcacactca atctgttcat tggtgttatc attgataatt 4861 ttaatgagca aaagaaaaaa gcaggtggat cattagaaat gttcatgaca gaagatcaga 4921 aaaagtacta taatgctatg aaaaagatgg gctctaaaaa accattaaaa gccattccaa 4981 gaccaaggtg gcgtccacaa gcaatagtct ttgaaatagt aaccgataag aaattcgata 5041 tagtcataat gttattcatt ggtctgaaca tgttcaccat gacactcgat cgttacgatg 5101 cgtcggacac gtacaacgcg gtccttgact atctcaatgc gatattcgta gttattttca 5161 gttccgaatg tctattaaaa atattcgctt tacgatatca ctattttatt gagccatgga 5221 atttatttga tgtagtagtt gtcattttat ccatcttagg tctcgtactt agcgatatta 5281 tcgagaaata cttcgtatcg ccgacactgc tccgagtggt gcgcgtggcc aaagtgggtc 5341 gcgtactgcg tctggtgaag ggcgccaagg gtatacgaac gctgctgttc gccctggcca 5401 tgtcgctgcc ggcgctgttc aacatctgcc tgctgctgtt cctggtcatg ttcatcttcg 5461 cgatattcgg catgtcgttc ttcatgcatg tgaaggagaa gagcggcatc aacgacgtct 5521 acaacttcaa gacgttcgga cagagcatga tcctgctctt tcagatgtct acctcagccg 5581 gttgggatgg tgtactcgac gccattatca atgaggaagc atgcgatcca cccgacaacg 5641 acaaaggcta tccgggcaat tgtggttcag cgaccgttgg aataacgttt ctcctctcat 5701 acctagttat aagctttttg atagttatta atatgtacat tgctgtcatt ctcgagaact 5761 atagtcaggc caccgaggat gtgcaggagg gtctcaccga cgacgattac gatatgtact 5821 atgagatctg gcaacagttc gatccggagg gcacccagta catacgatac gaccagctgt 5881 ccgagttcct cgacgtgctg gagcccccgc tccagattca caagcccaac aagtacaaaa 5941 tcatatcgat ggacataccc atctgtcgcg gtgacctcat gtactgtgtg gacatactgg 6001 acgcactgac caaagacttt ttcgcgcgca aaggcaatcc cattgaggag acgggcgaga 6061 ttggtgagat tgccgccagg ccggacaccg agggctacga gcccgtctcc tccaccctct 6121 ggcgacagcg ggaggagtac tgtgcccgcc tcattcaaca tgcctggcgc aagcataaaa 6181 cgcgcgccga gggcggtggt gcaccgtccg acgcggaagg cgacggcccc gaagatggtg 6241 atgcgggtgg cggtggcggg gcggcgctga tgctgggtgt tctggatgtt ccagatgctg 6301 ctggcgatgc agcaaccact ggctcccatg acggggcaac ggcactcgat cccgagaccg 6361 atccatcggg agtaccggcg gcagcggcgg tggccccaca gccagccggt gacggcggcg 6421 agggaccgga tggaggagca acagccgatc cgcacgagag caatgtaaat agtccgacga 6481 tggacggcgc gacggcgggc agcccgggcg cagggagcgc tggcagcact ggccgacaga 6541 cggccgttct cgtggagagc gatgggtttg tgaccaagaa cgggcacaag gttgtaatac 6601 actcgcgttc gccgagcata acgtcgcgca cggcggatgt ctgagccagg cctcgccccc 6661 ccctccaaga tgcacgcgag tattaggtgc aggtgcagat gcagtgcagt ggtggtgcca 6721 caacaacaac aacaacaaca gcaggtgcca ctggtagctg caattgcaac tgcaacagca 6781 gcaacaggaa gaa