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LOCUS XM_022361506 6793 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X25, mRNA. ACCESSION XM_022361506 VERSION XM_022361506.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361506.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6793 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6793 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6644 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X25" /protein_id="XP_022217198.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYT IRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNL GSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTT CLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQA AGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQE WISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATM KLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPT LNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNF TDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLS NFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSG ERTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDM KNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDL GIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPF WQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRI FTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR TLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYF KCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIM NDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGS LEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGL NMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVV VILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPA LFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENY SQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKY KIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVS STLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVL DVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHE SNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRT ADV" misc_feature 657..1511 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1866..2423 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2652..3287 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3363..4061 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4071..4886 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4854..5012 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4899..4910 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5034..5786 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5817..5960 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc 421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct 481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac 541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa 601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc 661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc 721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat 781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg 841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt 901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca 961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg 1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct 1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca 1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag 1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg 1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt 1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc 1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca 1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg 1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag 1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc 1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga 1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg 1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg 1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga 1861 gcacgacatc cttatcctta cctggttcac cgtttaacat acgcagggga tcacgtagtt 1921 ctcacaagta cacgatccgg aatggacgtg gacgctttgg tatacccggc agcgatcgca 1981 agccgttggt attgtcaaca tatcaggatg ctcagcagca cttgccctat gccgatgatt 2041 cgaacgctgt tacgcccatg tccgaggaga acggtgccat tatagtgccc gtttattatg 2101 gaaatctagg ctccaggcat tcatcgtata cttcgcatca gtccagaata tcgtatacct 2161 cacatggcga tctattgggc ggcatggccg tcatgggcgt cagcacaatg accaaggaga 2221 gcaaattgcg aaatcgcaac tcacgcaatc aatcagtggg cgccaccaat ggcggcacca 2281 cctgcctgga ccccaatcac aaggtcgagc atcgcgactt cgaaatcggt ctggagtgca 2341 cggacgaagc tggcaagatt aaacatcatg acaatccttt tatcgagccc gtccagacac 2401 aaacggtagt cgacatgaaa gatgtgatgg tactgaatga cattatcgaa caggccgctg 2461 gtcggcacag tcgggctagt gatcgcggtg tctccgttta ctatttccca acagaggacg 2521 atgatgagga tgggccgaca ttaaaagaca aggccctcga agcgctaatg aaaggcatcg 2581 aagtgttttg tgtgtgggac tgttgctggg tttggttgaa attgcaggag tggatatcgc 2641 tgatcgtctt cgatcccttt gtcgagctct tcatcacgct gtgcattgtg gtcaacacga 2701 tgttcatggc catggaccat cacgacatga acaaggagat ggaacgcatc cttaagtgcg 2761 gaaattattt cttcacggca acattcgcca ttgaggcaac catgaaactg tgcgccatga 2821 gccccaaata ctatttccag gagggctgga acatctttga cttcatcatt gtggcactct 2881 cattgctgga gctgggcctc gagggcgttc agggcctctc cgtcttgcgt tcgtttcgtt 2941 tgctgcgtgt attcaaattg gccaagtcct ggccaacact taatttactc atttcgatta 3001 tgggacgcac catgggcgct ttgggtaatc tgacatttgt actttgcatt atcatcttca 3061 tctttgcggt gatgggaatg caactgttcg gaaagaatta tcatgataac aaggatcgct 3121 tcccggacgg tgacctgccc cgctggaact tcaccgactt catgcacagc ttcatgatcg 3181 tgtttcgggt gctatgcggc gagtggatcg agtccatgtg ggactgtatg cacgtgggcg 3241 atgtatcgtg cattccattc ttcttggcca ccgttgtcat cggcaattta gtggttctta 3301 accttttctt agccctgctt ttgtcaaatt ttggttcatc tagcttatca gcgccgacag 3361 ccgataacga taccaataaa atagccgagg ccttcaatcg aattgggcga tttaaaagtt 3421 gggttaagcg taatattgct gattgtttca agttaatacg taacaaattg acaaatcaaa 3481 taagtgatca accatcaggt gagaggacca accagatcag ttggatttgg agcgaagagc 3541 acggcgacaa cgagctggag ctgggccacg acgagatact cgccgacggg ctcatcaaga 3601 agggcatcaa ggaggcgaca cagctggagg tggccatcgg tgatggcatg gagttcacga 3661 tacacggcga catgaagaac aacaagccga agaaatccaa atatctaaat aacgcaacgg 3721 acgacgacac tgccagcatt aactcatatg gtagccataa gaatcgacca ttcaaggatg 3781 agagccacaa gggcagcgcc gagacgatgg agggcgagga gaagcgggac gccagcaagg 3841 aggatttagg tatcgatgag gagctcgacg aggagggcga attggaggag ggcccgctcg 3901 acggcgatat catcatacat gccaacgatg aggatatact cgatgaatat ccagctgatt 3961 gctgccccga ttcgtactat aagaaatttc cgatcttagc cggtgatgat gactcgccgt 4021 tctggcaagg atggggcaat ttacgactga aaacttttca attaattgaa aataaatatt 4081 ttgaaacagc tgttatcact atgattttaa tgagtagctt agctttggca ttagaagatg 4141 tacatctgcc acaaagaccc atactgcagg atattttata ctatatggac agaatattta 4201 cggttatatt cttcttggaa atgttaatca agtggctggc gctcggcttc aaagtgtact 4261 tcacgaacgc gtggtgctgg ctcgatttcg tcattgtcat ggtatcgctt atcaacttcg 4321 ttgcttcact tgttggagct ggtggtattc aagccttcaa gactatgcga acgttaagag 4381 cactgagacc actacgtgcc atgtcccgta tgcagggcat gagggtcgtc gttaatgcgc 4441 tggtacaagc tataccgtcc atcttcaatg tgctattggt gtgtctaata ttttggctaa 4501 tttttgccat aatgggtgta cagctttttg ctggaaaata ttttaagtgc gaggacatga 4561 atggcacgaa gctcagccac gagatcatac caaatcgcaa tgcctgcgaa agcgagaact 4621 acacgtgggt gaattcagca atgaatttcg atcatgtagg taacgcgtat ctgtgccttt 4681 tccaagtggc caccttcaaa ggctggatac aaatcatgaa cgatgctatc gattcacgag 4741 aggtggacaa gcagccaatt cgtgaaacga acatctacat gtatttatat ttcgtattct 4801 tcatcatatt tggatcattt ttcacactca atctgttcat tggtgttatc attgataatt 4861 ttaatgagca aaagaaaaaa gcaggtggat cattagaaat gttcatgaca gaagatcaga 4921 aaaagtacta taatgctatg aaaaagatgg gctctaaaaa accattaaaa gccattccaa 4981 gaccaaggtg gcgtccacaa gcaatagtct ttgaaatagt aaccgataag aaattcgata 5041 tagtcataat gttattcatt ggtctgaaca tgttcaccat gacactcgat cgttacgatg 5101 cgtcggacac gtacaacgcg gtccttgact atctcaatgc gatattcgta gttattttca 5161 gttccgaatg tctattaaaa atattcgctt tacgatatca ctattttatt gagccatgga 5221 atttatttga tgtagtagtt gtcattttat ccatcttagg tctcgtactt agcgatatta 5281 tcgagaaata cttcgtatcg ccgacactgc tccgagtggt gcgcgtggcc aaagtgggtc 5341 gcgtactgcg tctggtgaag ggcgccaagg gtatacgaac gctgctgttc gccctggcca 5401 tgtcgctgcc ggcgctgttc aacatctgcc tgctgctgtt cctggtcatg ttcatcttcg 5461 cgatattcgg catgtcgttc ttcatgcatg tgaaggagaa gagcggcatc aacgacgtct 5521 acaacttcaa gacgttcgga cagagcatga tcctgctctt tcagatgtct acctcagccg 5581 gttgggatgg tgtactcgac gccattatca atgaggaagc atgcgatcca cccgacaacg 5641 acaaaggcta tccgggcaat tgtggttcag cgaccgttgg aataacgttt ctcctctcat 5701 acctagttat aagctttttg atagttatta atatgtacat tgctgtcatt ctcgagaact 5761 atagtcaggc caccgaggat gtgcaggagg gtctcaccga cgacgattac gatatgtact 5821 atgagatctg gcaacagttc gatccggagg gcacccagta catacgatac gaccagctgt 5881 ccgagttcct cgacgtgctg gagcccccgc tccagattca caagcccaac aagtacaaaa 5941 tcatatcgat ggacataccc atctgtcgcg gtgacctcat gtactgtgtg gacatactgg 6001 acgcactgac caaagacttt ttcgcgcgca aaggcaatcc cattgaggag acgggcgaga 6061 ttggtgagat tgccgccagg ccggacaccg agggctacga gcccgtctcc tccaccctct 6121 ggcgacagcg ggaggagtac tgtgcccgcc tcattcaaca tgcctggcgc aagcataaaa 6181 cgcgcgccga gggcggtggt gcaccgtccg acgcggaagg cgacggcccc gaagatggtg 6241 atgcgggtgg cggtggcggg gcggcgctga tgctgggtgt tctggatgtt ccagatgctg 6301 ctggcgatgc agcaaccact ggctcccatg acggggcaac ggcactcgat cccgagaccg 6361 atccatcggg agtaccggcg gcagcggcgg tggccccaca gccagccggt gacggcggcg 6421 agggaccgga tggaggagca acagccgatc cgcacgagag caatgtaaat agtccgacga 6481 tggacggcgc gacggcgggc agcccgggcg cagggagcgc tggcagcact ggccgacaga 6541 cggccgttct cgtggagagc gatgggtttg tgaccaagaa cgggcacaag gttgtaatac 6601 actcgcgttc gccgagcata acgtcgcgca cggcggatgt ctgagccagg cctcgccccc 6661 ccctccaaga tgcacgcgag tattaggtgc aggtgcagat gcagtgcagt ggtggtgcca 6721 caacaacaac aacaacaaca gcaggtgcca ctggtagctg caattgcaac tgcaacagca 6781 gcaacaggaa gaa