PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361504 6796 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X24, mRNA.
ACCESSION XM_022361504
VERSION XM_022361504.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361504.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6796
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6796
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 43 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 6 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6647
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X24"
/protein_id="XP_022217196.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL
TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI
MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM
GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL
MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS
GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP
WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA
AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM
SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLS
TYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGD
LLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFEIGLECTD
EAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED
DDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV
NTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI
IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV
LCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES
MWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE
AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCISAEHGDNELELGHD
EILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATMIGNSINHQ
DNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKED
LGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSP
FWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDR
IFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTM
RTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKY
FKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQI
MNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGG
SLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIG
LNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVV
VVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLP
ALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGW
DGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILEN
YSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNK
YKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPV
SSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGV
LDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPH
ESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSR
TADV"
misc_feature 657..1511
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1860..2360
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2589..3224
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3300..4064
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4074..4889
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4857..5015
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4902..4913
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5037..5789
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5820..5963
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc
421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct
481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac
541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa
601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc
661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc
721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat
781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg
841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt
901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca
961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg
1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct
1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca
1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag
1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg
1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt
1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc
1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca
1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg
1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag
1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc
1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga
1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg
1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg
1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga
1861 gcacgtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc
1921 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga
1981 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa
2041 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac
2101 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca
2161 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct
2221 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg
2281 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa
2341 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc
2401 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg
2461 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag
2521 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga
2581 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt
2641 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa
2701 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc
2761 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat
2821 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc
2881 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg
2941 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct
3001 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc
3061 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt
3121 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg
3181 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc
3241 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg
3301 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg
3361 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa
3421 gtgatcaacc atcaggcaaa ggcgtttgtc gttgtatatc tgcagagcac ggcgacaacg
3481 agctggagct gggccacgac gagatactcg ccgacgggct catcaagaag ggcatcaagg
3541 aggcgacaca gctggaggtg gccatcggtg atggcatgga gttcacgata cacggcgaca
3601 tgaagaacaa caagccgaag aaatccaaat atctaaataa cgcaacgatg attggcaact
3661 caattaacca ccaagacaat agactggaac acgagctaaa ccatagaggt ttgtccttac
3721 aggacgacga cactgccagc attaactcat atggtagcca taagaatcga ccattcaagg
3781 atgagagcca caagggcagc gccgagacga tggagggcga ggagaagcgg gacgccagca
3841 aggaggattt aggtatcgat gaggagctcg acgaggaggg cgaattggag gagggcccgc
3901 tcgacggcga tatcatcata catgccaacg atgaggatat actcgatgaa tatccagctg
3961 attgctgccc cgattcgtac tataagaaat ttccgatctt agccggtgat gatgactcgc
4021 cgttctggca aggatggggc aatttacgac tgaaaacttt tcaattaatt gaaaataaat
4081 attttgaaac agctgttatc actatgattt taatgagtag cttagctttg gcattagaag
4141 atgtacatct gccacaaaga cccatactgc aggatatttt atactatatg gacagaatat
4201 ttacggttat attcttcttg gaaatgttaa tcaagtggct ggcgctcggc ttcaaagtgt
4261 acttcacgaa cgcgtggtgc tggctcgatt tcgtcattgt catggtatcg cttatcaact
4321 tcgttgcttc acttgttgga gctggtggta ttcaagcctt caagactatg cgaacgttaa
4381 gagcactgag accactacgt gccatgtccc gtatgcaggg catgagggtc gtcgttaatg
4441 cgctggtaca agctataccg tccatcttca atgtgctatt ggtgtgtcta atattttggc
4501 taatttttgc cataatgggt gtacagcttt ttgctggaaa atattttaag tgcgaggaca
4561 tgaatggcac gaagctcagc cacgagatca taccaaatcg caatgcctgc gaaagcgaga
4621 actacacgtg ggtgaattca gcaatgaatt tcgatcatgt aggtaacgcg tatctgtgcc
4681 ttttccaagt ggccaccttc aaaggctgga tacaaatcat gaacgatgct atcgattcac
4741 gagaggtgga caagcagcca attcgtgaaa cgaacatcta catgtattta tatttcgtat
4801 tcttcatcat atttggatca tttttcacac tcaatctgtt cattggtgtt atcattgata
4861 attttaatga gcaaaagaaa aaagcaggtg gatcattaga aatgttcatg acagaagatc
4921 agaaaaagta ctataatgct atgaaaaaga tgggctctaa aaaaccatta aaagccattc
4981 caagaccaag gtggcgtcca caagcaatag tctttgaaat agtaaccgat aagaaattcg
5041 atatagtcat aatgttattc attggtctga acatgttcac catgacactc gatcgttacg
5101 atgcgtcgga cacgtacaac gcggtccttg actatctcaa tgcgatattc gtagttattt
5161 tcagttccga atgtctatta aaaatattcg ctttacgata tcactatttt attgagccat
5221 ggaatttatt tgatgtagta gttgtcattt tatccatctt aggtctcgta cttagcgata
5281 ttatcgagaa atacttcgta tcgccgacac tgctccgagt ggtgcgcgtg gccaaagtgg
5341 gtcgcgtact gcgtctggtg aagggcgcca agggtatacg aacgctgctg ttcgccctgg
5401 ccatgtcgct gccggcgctg ttcaacatct gcctgctgct gttcctggtc atgttcatct
5461 tcgcgatatt cggcatgtcg ttcttcatgc atgtgaagga gaagagcggc atcaacgacg
5521 tctacaactt caagacgttc ggacagagca tgatcctgct ctttcagatg tctacctcag
5581 ccggttggga tggtgtactc gacgccatta tcaatgagga agcatgcgat ccacccgaca
5641 acgacaaagg ctatccgggc aattgtggtt cagcgaccgt tggaataacg tttctcctct
5701 catacctagt tataagcttt ttgatagtta ttaatatgta cattgctgtc attctcgaga
5761 actatagtca ggccaccgag gatgtgcagg agggtctcac cgacgacgat tacgatatgt
5821 actatgagat ctggcaacag ttcgatccgg agggcaccca gtacatacga tacgaccagc
5881 tgtccgagtt cctcgacgtg ctggagcccc cgctccagat tcacaagccc aacaagtaca
5941 aaatcatatc gatggacata cccatctgtc gcggtgacct catgtactgt gtggacatac
6001 tggacgcact gaccaaagac tttttcgcgc gcaaaggcaa tcccattgag gagacgggcg
6061 agattggtga gattgccgcc aggccggaca ccgagggcta cgagcccgtc tcctccaccc
6121 tctggcgaca gcgggaggag tactgtgccc gcctcattca acatgcctgg cgcaagcata
6181 aaacgcgcgc cgagggcggt ggtgcaccgt ccgacgcgga aggcgacggc cccgaagatg
6241 gtgatgcggg tggcggtggc ggggcggcgc tgatgctggg tgttctggat gttccagatg
6301 ctgctggcga tgcagcaacc actggctccc atgacggggc aacggcactc gatcccgaga
6361 ccgatccatc gggagtaccg gcggcagcgg cggtggcccc acagccagcc ggtgacggcg
6421 gcgagggacc ggatggagga gcaacagccg atccgcacga gagcaatgta aatagtccga
6481 cgatggacgg cgcgacggcg ggcagcccgg gcgcagggag cgctggcagc actggccgac
6541 agacggccgt tctcgtggag agcgatgggt ttgtgaccaa gaacgggcac aaggttgtaa
6601 tacactcgcg ttcgccgagc ataacgtcgc gcacggcgga tgtctgagcc aggcctcgcc
6661 cccccctcca agatgcacgc gagtattagg tgcaggtgca gatgcagtgc agtggtggtg
6721 ccacaacaac aacaacaaca acagcaggtg ccactggtag ctgcaattgc aactgcaaca
6781 gcagcaacag gaagaa