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LOCUS XM_022361504 6796 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X24, mRNA. ACCESSION XM_022361504 VERSION XM_022361504.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361504.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6796 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6796 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6647 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X24" /protein_id="XP_022217196.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLS TYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGD LLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDFEIGLECTD EAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED DDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV NTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV LCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES MWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCISAEHGDNELELGHD EILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATMIGNSINHQ DNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKED LGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDDSP FWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDR IFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTM RTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKY FKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQI MNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGG SLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIG LNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVV VVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLP ALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGW DGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILEN YSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNK YKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPV SSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGV LDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPH ESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSR TADV" misc_feature 657..1511 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1860..2360 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2589..3224 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3300..4064 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4074..4889 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4857..5015 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4902..4913 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5037..5789 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5820..5963 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc 421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct 481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac 541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa 601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc 661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc 721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat 781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg 841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt 901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca 961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg 1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct 1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca 1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag 1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg 1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt 1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc 1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca 1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg 1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag 1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc 1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga 1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg 1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg 1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga 1861 gcacgtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc 1921 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga 1981 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa 2041 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac 2101 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca 2161 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct 2221 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg 2281 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa 2341 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc 2401 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg 2461 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag 2521 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga 2581 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt 2641 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa 2701 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc 2761 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat 2821 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc 2881 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg 2941 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct 3001 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc 3061 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt 3121 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg 3181 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc 3241 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg 3301 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg 3361 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa 3421 gtgatcaacc atcaggcaaa ggcgtttgtc gttgtatatc tgcagagcac ggcgacaacg 3481 agctggagct gggccacgac gagatactcg ccgacgggct catcaagaag ggcatcaagg 3541 aggcgacaca gctggaggtg gccatcggtg atggcatgga gttcacgata cacggcgaca 3601 tgaagaacaa caagccgaag aaatccaaat atctaaataa cgcaacgatg attggcaact 3661 caattaacca ccaagacaat agactggaac acgagctaaa ccatagaggt ttgtccttac 3721 aggacgacga cactgccagc attaactcat atggtagcca taagaatcga ccattcaagg 3781 atgagagcca caagggcagc gccgagacga tggagggcga ggagaagcgg gacgccagca 3841 aggaggattt aggtatcgat gaggagctcg acgaggaggg cgaattggag gagggcccgc 3901 tcgacggcga tatcatcata catgccaacg atgaggatat actcgatgaa tatccagctg 3961 attgctgccc cgattcgtac tataagaaat ttccgatctt agccggtgat gatgactcgc 4021 cgttctggca aggatggggc aatttacgac tgaaaacttt tcaattaatt gaaaataaat 4081 attttgaaac agctgttatc actatgattt taatgagtag cttagctttg gcattagaag 4141 atgtacatct gccacaaaga cccatactgc aggatatttt atactatatg gacagaatat 4201 ttacggttat attcttcttg gaaatgttaa tcaagtggct ggcgctcggc ttcaaagtgt 4261 acttcacgaa cgcgtggtgc tggctcgatt tcgtcattgt catggtatcg cttatcaact 4321 tcgttgcttc acttgttgga gctggtggta ttcaagcctt caagactatg cgaacgttaa 4381 gagcactgag accactacgt gccatgtccc gtatgcaggg catgagggtc gtcgttaatg 4441 cgctggtaca agctataccg tccatcttca atgtgctatt ggtgtgtcta atattttggc 4501 taatttttgc cataatgggt gtacagcttt ttgctggaaa atattttaag tgcgaggaca 4561 tgaatggcac gaagctcagc cacgagatca taccaaatcg caatgcctgc gaaagcgaga 4621 actacacgtg ggtgaattca gcaatgaatt tcgatcatgt aggtaacgcg tatctgtgcc 4681 ttttccaagt ggccaccttc aaaggctgga tacaaatcat gaacgatgct atcgattcac 4741 gagaggtgga caagcagcca attcgtgaaa cgaacatcta catgtattta tatttcgtat 4801 tcttcatcat atttggatca tttttcacac tcaatctgtt cattggtgtt atcattgata 4861 attttaatga gcaaaagaaa aaagcaggtg gatcattaga aatgttcatg acagaagatc 4921 agaaaaagta ctataatgct atgaaaaaga tgggctctaa aaaaccatta aaagccattc 4981 caagaccaag gtggcgtcca caagcaatag tctttgaaat agtaaccgat aagaaattcg 5041 atatagtcat aatgttattc attggtctga acatgttcac catgacactc gatcgttacg 5101 atgcgtcgga cacgtacaac gcggtccttg actatctcaa tgcgatattc gtagttattt 5161 tcagttccga atgtctatta aaaatattcg ctttacgata tcactatttt attgagccat 5221 ggaatttatt tgatgtagta gttgtcattt tatccatctt aggtctcgta cttagcgata 5281 ttatcgagaa atacttcgta tcgccgacac tgctccgagt ggtgcgcgtg gccaaagtgg 5341 gtcgcgtact gcgtctggtg aagggcgcca agggtatacg aacgctgctg ttcgccctgg 5401 ccatgtcgct gccggcgctg ttcaacatct gcctgctgct gttcctggtc atgttcatct 5461 tcgcgatatt cggcatgtcg ttcttcatgc atgtgaagga gaagagcggc atcaacgacg 5521 tctacaactt caagacgttc ggacagagca tgatcctgct ctttcagatg tctacctcag 5581 ccggttggga tggtgtactc gacgccatta tcaatgagga agcatgcgat ccacccgaca 5641 acgacaaagg ctatccgggc aattgtggtt cagcgaccgt tggaataacg tttctcctct 5701 catacctagt tataagcttt ttgatagtta ttaatatgta cattgctgtc attctcgaga 5761 actatagtca ggccaccgag gatgtgcagg agggtctcac cgacgacgat tacgatatgt 5821 actatgagat ctggcaacag ttcgatccgg agggcaccca gtacatacga tacgaccagc 5881 tgtccgagtt cctcgacgtg ctggagcccc cgctccagat tcacaagccc aacaagtaca 5941 aaatcatatc gatggacata cccatctgtc gcggtgacct catgtactgt gtggacatac 6001 tggacgcact gaccaaagac tttttcgcgc gcaaaggcaa tcccattgag gagacgggcg 6061 agattggtga gattgccgcc aggccggaca ccgagggcta cgagcccgtc tcctccaccc 6121 tctggcgaca gcgggaggag tactgtgccc gcctcattca acatgcctgg cgcaagcata 6181 aaacgcgcgc cgagggcggt ggtgcaccgt ccgacgcgga aggcgacggc cccgaagatg 6241 gtgatgcggg tggcggtggc ggggcggcgc tgatgctggg tgttctggat gttccagatg 6301 ctgctggcga tgcagcaacc actggctccc atgacggggc aacggcactc gatcccgaga 6361 ccgatccatc gggagtaccg gcggcagcgg cggtggcccc acagccagcc ggtgacggcg 6421 gcgagggacc ggatggagga gcaacagccg atccgcacga gagcaatgta aatagtccga 6481 cgatggacgg cgcgacggcg ggcagcccgg gcgcagggag cgctggcagc actggccgac 6541 agacggccgt tctcgtggag agcgatgggt ttgtgaccaa gaacgggcac aaggttgtaa 6601 tacactcgcg ttcgccgagc ataacgtcgc gcacggcgga tgtctgagcc aggcctcgcc 6661 cccccctcca agatgcacgc gagtattagg tgcaggtgca gatgcagtgc agtggtggtg 6721 ccacaacaac aacaacaaca acagcaggtg ccactggtag ctgcaattgc aactgcaaca 6781 gcagcaacag gaagaa